AT2G47880

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012965
Physical Location & Seq
Forward (+)
19605030 .. 19605704
675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47880.1

Sequence Viewer

Length: 309 bp
ATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGGTGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACCTTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGAAGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGCTTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGATCAAACCCTATCAGTCCATCCTTTACTAG

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

7.63

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 3.3e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06830 AT2G30540 AT2G47880 AT3G62960
fragaria_vesca FvH4_2g24940
malus_domestica MD03G1277900.v1.1 MD11G1299800.v1.1
prunus_persica Prupe.8G254200_v2.0.a1
pyrus_communis pycom03g22130 pycom11g26350
rosa_chinensis RchiOBHm_Chr6g0292861
rosa_laevigata RLG00000011986
rosa_rugosa Rorug06G0230300
rosa_samantha Rh6AG343600 Rh6BG350800 Rh6CG357800 Rh6DG343700
rosa_wichuraiana Rw6G029970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 9
AgsI TTSAA 2 cut(s) 83, 110
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 3 cut(s) 57, 200, 220
AluI AGCT 3 cut(s) 57, 200, 220
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 52, 245
AxyI CCTNAGG 1 cut(s) 101
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 2 cut(s) 125, 305
BceAI ACGGC 3 cut(s) 62, 132, 204
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 195, 229
BmrFI CCNGG 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 117, 297
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 140, 172
BslFI GGGAC 2 cut(s) 232, 257
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 232, 257
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 42, 126, 153, 279
BspACI CCGC 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 195, 229
BspQI GCTCTTC 2 cut(s) 47, 171
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 42, 126, 153, 279
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 2 cut(s) 47, 171
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 101, 257
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 117, 297
BstKTI GATC 4 cut(s) 45, 129, 156, 282
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 42, 126, 153, 279
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 117, 297
Cac8I GCNNGC 1 cut(s) 218
CviAII CATG 2 cut(s) 60, 244
CviJI RGCY 8 cut(s) 57, 164, 175, 180, 200, 220, 228, 264
CviKI_1 RGCY 8 cut(s) 57, 164, 175, 180, 200, 220, 228, 264
DdeI CTNAG 2 cut(s) 101, 257
DpnI GATC 4 cut(s) 44, 128, 155, 281
DpnII GATC 4 cut(s) 42, 126, 153, 279
Eam1104I CTCTTC 2 cut(s) 47, 171
EarI CTCTTC 2 cut(s) 47, 171
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 63, 247
FaiI YATR 2 cut(s) 61, 245
FaqI GGGAC 2 cut(s) 232, 257
FatI CATG 2 cut(s) 59, 243
FbaI TGATCA 1 cut(s) 279
FokI GGATG 2 cut(s) 104, 284
FriOI GRGCYC 1 cut(s) 59
FspBI CTAG 1 cut(s) 307
HapII CCGG 2 cut(s) 140, 172
Hin1II CATG 2 cut(s) 63, 247
HindIII AAGCTT 1 cut(s) 218
HpaII CCGG 2 cut(s) 140, 172
HphI GGTGA 2 cut(s) 52, 245
Hpy188I TCNGA 2 cut(s) 28, 212
Hpy188III TCNNGA 2 cut(s) 49, 157
HpyAV CCTTC 2 cut(s) 154, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 101, 257
Hsp92II CATG 2 cut(s) 63, 247
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 42, 126, 153, 279
LguI GCTCTTC 2 cut(s) 47, 171
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 101, 153, 185, 210
MaeI CTAG 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 44, 128, 155, 281
MboI GATC 4 cut(s) 42, 126, 153, 279
MboII GAAGA 4 cut(s) 15, 37, 64, 158
MhlI GDGCHC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 22
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 140, 172
MspR9I CCNGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 140
NdeII GATC 4 cut(s) 42, 126, 153, 279
NlaIII CATG 2 cut(s) 63, 247
NlaIV GGNNCC 2 cut(s) 195, 229
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 95
OliI CACNNNNGTG 1 cut(s) 258
PciSI GCTCTTC 2 cut(s) 47, 171
PdmI GAANNNNTTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 195, 229
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 2 cut(s) 47, 171
Sau3AI GATC 4 cut(s) 42, 126, 153, 279
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 59, 102, 202, 222, 258
SmiMI CAYNNNNRTG 1 cut(s) 258
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 138
TaqI TCGA 2 cut(s) 129, 156
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.