AT2G30540

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012965
Physical Location & Seq
Reverse (-)
13011105 .. 13012043
939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30540.1

Sequence Viewer

Length: 309 bp
ATGGACAAAGTTGTGAGAATGTCGTCAGAGAAAGGAGTGGTTATTTTCAGCAAGAGCTCGTGTTGCATGTCCTATGCGGTCCAAGTACTTTTCCAAGACCTTGGGGTTCACCCAACAGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGAAAGCCCTAATGAGGTTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGCTCATTGGTTCGACCAATGAAGTCATGTCGCTTCACTTAAGCGGCTCGCTGGTTCCGCTAGTTAAGCCGTTTCAAGCCAATCTATGTTAA

Protein Analysis

102

Amino Acids

11.08

Weight (kDa)

6.8

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 2.9e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06830 AT2G30540 AT2G47880 AT3G62960
fragaria_vesca FvH4_2g24940
malus_domestica MD03G1277900.v1.1 MD11G1299800.v1.1
prunus_persica Prupe.8G254200_v2.0.a1
pyrus_communis pycom03g22130 pycom11g26350
rosa_chinensis RchiOBHm_Chr6g0292861
rosa_laevigata RLG00000011986
rosa_rugosa Rorug06G0230300
rosa_samantha Rh6AG343600 Rh6BG350800 Rh6CG357800 Rh6DG343700
rosa_wichuraiana Rw6G029970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 261, 275
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 171
AflII CTTAAG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 57, 220
AluI AGCT 2 cut(s) 57, 220
Alw21I GWGCWC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 79, 193
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 2 cut(s) 79, 193
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 271
BfaI CTAG 1 cut(s) 278
BfrI CTTAAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
BmcAI AGTACT 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 79, 193
BmgT120I GGNCC 2 cut(s) 79, 193
BmiI GGNNCC 2 cut(s) 195, 273
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 190
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 126, 153
BspACI CCGC 3 cut(s) 77, 261, 275
BspDI ATCGAT 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 195, 273
BspTI CTTAAG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 126, 153
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 129, 156
BstMBI GATC 2 cut(s) 126, 153
BstMWI GCNNNNNNNGC 3 cut(s) 63, 274, 283
BstNSI RCATGY 1 cut(s) 70
BstXI CCANNNNNNTGG 2 cut(s) 101, 208
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 79, 193
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 86
CviAII CATG 3 cut(s) 67, 122, 244
CviJI RGCY 7 cut(s) 57, 164, 200, 220, 264, 286, 296
CviKI_1 RGCY 7 cut(s) 57, 164, 200, 220, 264, 286, 296
CviQI GTAC 1 cut(s) 86
DpnI GATC 2 cut(s) 128, 155
DpnII GATC 2 cut(s) 126, 153
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 79, 193
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 70, 125, 247
FaiI YATR 5 cut(s) 68, 75, 123, 245, 304
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 66, 121, 243
Fnu4HI GCNGC 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 200
HapII CCGG 1 cut(s) 191
Hin1II CATG 3 cut(s) 70, 125, 247
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 149, 157
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 274, 283
Hsp92II CATG 3 cut(s) 70, 125, 247
Kzo9I GATC 2 cut(s) 126, 153
LpnPI CCDG 4 cut(s) 153, 204, 210, 254
MaeI CTAG 1 cut(s) 278
MalI GATC 2 cut(s) 128, 155
MboI GATC 2 cut(s) 126, 153
MhlI GDGCHC 1 cut(s) 59
MnlI CCTC 1 cut(s) 165
MseI TTAA 3 cut(s) 257, 282, 307
MslI CAYNNNNRTG 1 cut(s) 206
MspCI CTTAAG 1 cut(s) 256
MspI CCGG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 63, 274, 283
NdeII GATC 2 cut(s) 126, 153
NlaIII CATG 3 cut(s) 70, 125, 247
NlaIV GGNNCC 2 cut(s) 195, 273
NspI RCATGY 1 cut(s) 70
PkrI GCNGC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 195, 273
PspPI GGNCC 2 cut(s) 79, 193
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 3 cut(s) 257, 282, 307
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 126, 153
Sau96I GGNCC 2 cut(s) 79, 193
ScaI AGTACT 1 cut(s) 87
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 59, 102, 176, 222
SinI GGWCC 2 cut(s) 79, 193
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
SsiI CCGC 3 cut(s) 77, 261, 275
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 59
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 129, 156, 230
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 257, 282, 307
Tru9I TTAA 3 cut(s) 257, 282, 307
TspDTI ATGAA 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 79, 193
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 278
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.