AT1G07080

lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007317
Physical Location & Seq
Forward (+)
2169977 .. 2172194
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07080.1

Sequence Viewer

Length: 798 bp
ATGGCGTCGATGCCGAGCAAACTTCTTCCAGTCCTAGTCTGCTACGTTTTTCTTTTCCCCTTTGCATCATCATCTGATTATTCTGGGGTATCTCTTCCATCTTCGTCGCCTAAAGTCTCGGTGGGCCTGTACTACGAGTCTCTCTGTCCCTACTGCTCTTCCTTCATTGTTAACCACCTCGCGAAGCTCTTCGAAGACGATCTCATATCAATCGTCGATCTCCATCTCTCTCCGTGGGGCAATACCAAGCTCCGTTCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCTTGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTAAGCGATCATTTCCCGTTCATATACTGTGTCGAGAAGTTGGTGACTGAACATAAGTATGACAAGTGGGAGACGTGTTATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCAGATTGTCTCAGCAGTGGACATGGGAATGAGCTTGCTTTGCACTATGCTGCAGAAACGAATGCGCTTCAGCCTCCTCACAAGTATGTGCCCTGGGTAGTCGTGGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGCTACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTACCAAATATGCAACCGGCAACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGTGTCCTGGAAAGGCGTGAATAAGATGTGGGATGTGTTGGAACGTATCACAACCTCTTTATCGTCATACATCGACATCACCGGCCTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

265

Amino Acids

29.7

Weight (kDa)

6.05

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 41 - 144 5.4e-31 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 131, 636, 649
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 2 cut(s) 296, 691
AjiI CACGTC 1 cut(s) 420
AjnI CCWGG 3 cut(s) 548, 637, 710
AluBI AGCT 6 cut(s) 187, 250, 320, 433, 490, 603
AluI AGCT 6 cut(s) 187, 250, 320, 433, 490, 603
Alw26I GTCTC 4 cut(s) 121, 144, 410, 470
AoxI GGCC 3 cut(s) 124, 338, 787
ApeKI GCWGC 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 2 cut(s) 523, 644
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 400, 775
AsuII TTCGAA 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 493
BccI CCATC 3 cut(s) 106, 231, 557
BceAI ACGGC 1 cut(s) 257
BciT130I CCWGG 3 cut(s) 550, 639, 712
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 4 cut(s) 121, 144, 410, 470
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 550, 639, 712
BmgBI CACGTC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 550, 639, 712
BmsI GCATC 2 cut(s) 74, 322
BpiI GAAGAC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 233, 548, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 2 cut(s) 662, 785
Bse1I ACTGG 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 3 cut(s) 550, 639, 712
BseDI CCNNGG 3 cut(s) 233, 548, 549
BseGI GGATG 2 cut(s) 568, 742
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 3 cut(s) 126, 340, 789
BsiSI CCGG 2 cut(s) 663, 786
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 4 cut(s) 121, 144, 410, 470
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 2 cut(s) 302, 523
BsnI GGCC 3 cut(s) 126, 340, 789
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 3 cut(s) 199, 217, 352
Bsp68I TCGCGA 1 cut(s) 182
BspANI GGCC 3 cut(s) 126, 340, 789
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 511
BspQI GCTCTTC 2 cut(s) 163, 194
BspT104I TTCGAA 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 662, 785
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 2 cut(s) 662, 785
BssECI CCNNGG 3 cut(s) 233, 548, 549
BssMI GATC 3 cut(s) 199, 217, 352
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 550, 639, 712
Bst4CI ACNGT 2 cut(s) 313, 374
Bst6I CTCTTC 3 cut(s) 99, 163, 194
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 281, 492, 791
BstDEI CTNAG 1 cut(s) 467
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 568, 742
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 2 cut(s) 523, 644
BstKTI GATC 3 cut(s) 202, 220, 355
BstMAI GTCTC 4 cut(s) 121, 144, 410, 470
BstMBI GATC 3 cut(s) 199, 217, 352
BstMWI GCNNNNNNNGC 3 cut(s) 332, 496, 609
BstNI CCWGG 3 cut(s) 550, 639, 712
BstNSI RCATGY 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 548, 637, 710
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 3 cut(s) 126, 340, 789
BtgI CCRYGG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 568, 742
BtsI GCAGTG 2 cut(s) 267, 478
BtsIMutI CAGTG 2 cut(s) 267, 478
BtuMI TCGCGA 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 281, 492, 791
CfoI GCGC 2 cut(s) 523, 644
Cfr10I RCCGGY 2 cut(s) 662, 785
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 130, 635, 648
CviAII CATG 3 cut(s) 284, 479, 645
CviQI GTAC 3 cut(s) 130, 635, 648
DdeI CTNAG 1 cut(s) 467
DpnI GATC 3 cut(s) 201, 219, 354
DpnII GATC 3 cut(s) 199, 217, 352
Eam1104I CTCTTC 3 cut(s) 99, 163, 194
EarI CTCTTC 3 cut(s) 99, 163, 194
Eco57I CTGAAG 1 cut(s) 509
EcoRII CCWGG 3 cut(s) 548, 637, 710
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 3 cut(s) 287, 482, 648
FaqI GGGAC 1 cut(s) 132
FatI CATG 3 cut(s) 283, 478, 644
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 575, 749
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 522, 643
GluI GCNGC 1 cut(s) 507
HaeIII GGCC 3 cut(s) 126, 340, 789
HapII CCGG 2 cut(s) 663, 786
HhaI GCGC 2 cut(s) 523, 644
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 287, 482, 648
Hin6I GCGC 2 cut(s) 521, 642
HinP1I GCGC 2 cut(s) 521, 642
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 137
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 663, 786
HphI GGTGA 2 cut(s) 400, 775
Hpy166II GTNNAC 2 cut(s) 172, 476
Hpy188I TCNGA 2 cut(s) 76, 259
Hpy188III TCNNGA 2 cut(s) 181, 379
Hpy8I GTNNAC 2 cut(s) 172, 476
Hpy99I CGWCG 3 cut(s) 10, 109, 218
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 313, 374
HpyCH4IV ACGT 4 cut(s) 45, 264, 419, 748
HpyCH4V TGCA 7 cut(s) 65, 326, 458, 499, 509, 612, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 496, 609
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 4 cut(s) 45, 264, 419, 748
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 287, 482, 648
HspAI GCGC 2 cut(s) 521, 642
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 199, 217, 352
LguI GCTCTTC 2 cut(s) 163, 194
LmnI GCTCC 2 cut(s) 255, 701
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 2 cut(s) 74, 322
MaeI CTAG 1 cut(s) 35
MaeII ACGT 4 cut(s) 45, 264, 419, 748
MaeIII GTNAC 2 cut(s) 265, 388
MalI GATC 3 cut(s) 201, 219, 354
MboI GATC 3 cut(s) 199, 217, 352
MboII GAAGA 6 cut(s) 17, 86, 93, 150, 181, 206
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 2 cut(s) 327, 686
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 6 cut(s) 188, 540, 543, 574, 711, 769
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 4 cut(s) 295, 402, 483, 540
MspI CCGG 2 cut(s) 663, 786
MspR9I CCNGG 3 cut(s) 550, 639, 712
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 302, 523
MvaI CCWGG 3 cut(s) 550, 639, 712
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 332, 496, 609
NdeII GATC 3 cut(s) 199, 217, 352
NlaIII CATG 3 cut(s) 287, 482, 648
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 265, 388
NruI TCGCGA 1 cut(s) 182
NspI RCATGY 1 cut(s) 648
NspV TTCGAA 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 549
PciSI GCTCTTC 2 cut(s) 163, 194
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 2 cut(s) 302, 523
PdmI GAANNNNTTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 710
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 548, 637, 710
PspGI CCWGG 3 cut(s) 548, 637, 710
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 511
RruI TCGCGA 1 cut(s) 182
RsaI GTAC 3 cut(s) 131, 636, 649
RsaNI GTAC 3 cut(s) 130, 635, 648
RseI CAYNNNNRTG 4 cut(s) 295, 402, 483, 540
SapI GCTCTTC 2 cut(s) 163, 194
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 3 cut(s) 199, 217, 352
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 3 cut(s) 550, 639, 712
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 2 cut(s) 74, 322
SfcI CTRYAG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 192
SmiMI CAYNNNNRTG 4 cut(s) 295, 402, 483, 540
Sse9I AATT 2 cut(s) 327, 686
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 548, 637, 710
TaaI ACNGT 2 cut(s) 313, 374
TaiI ACGT 4 cut(s) 48, 267, 422, 751
TaqI TCGA 6 cut(s) 8, 192, 216, 378, 446, 777
TasI AATT 2 cut(s) 327, 686
TatI WGTACW 1 cut(s) 129
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 274, 478
TseFI GTSAC 2 cut(s) 265, 388
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 265, 388
TspDTI ATGAA 5 cut(s) 154, 355, 586, 603, 661
TspGWI ACGGA 2 cut(s) 222, 242
TspRI CASTG 2 cut(s) 274, 478
XceI RCATGY 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.