Rh5AG466300
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007317
Physical Location & Seq
Reverse (-)
80114335 .. 80118711
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG466300.1

Sequence Viewer

Length: 750 bp
ATGGCTTCTAAATATTCCTCACTACTAGCACACATCCTCTTGTTCATTTGCTCTGTGTTACTATTACCCAATTCCTCTTCTTCTGAGAGCACCAAAGTCTCTGTGGATTTGTACTACGAAACCCTTTGCCCTGATTGCTCTGATTTCATTGTTAAACATCTGATCAAGCTCTTCGACACCGGACTCATCTCCGCCGTTGACCTGAATCTCGTCCCATACGGCAACGCCAGGCTCGGAACCAACGACACCATCACTTGCCAGCATGGTCCATCTGAATGCTTATTGAACACGGTGGAAGCCTGTGCAATTGAGACCTGGCCTGCACTGAATGATCATTTTCCTTTCATTTATTGTGTTGAGAGTTTGGTTTACGAGCACAAGTATCCCCAGTGGGAGTCATGTTATGAGAAACTGGGCCTGAACTCAACACTTATTGCTGAATGCTACAATAGTGGACATGGCAAAGAGCTTGAACTAAAATATGCAGCTGAAACCAATGCACTCCAGCCTCCACATCAGTATGTGCCATGGGTAGTTGTGGATGGACAGCCACTTTACGAGGACTATGAAAACTTTCTAAGCTATGTCTGCAATGCTTATAATGGCACCACAATGCTCAAGGGCTGCAATGAATACCTCAATACTATCCAAATGGCAGGGGAAAAACCTAACGATCCAGTCGCCTGCAAGGAGGGAAAGATGCCAGCATTATTTGGAAGAATTCGATCAACTCTAACTTCATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

249

Amino Acids

27.88

Weight (kDa)

4.85

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 35 - 137 3.5e-32 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 605
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 668
AcsI RAATTY 1 cut(s) 720
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 2 cut(s) 286, 473
AjnI CCWGG 2 cut(s) 227, 314
AluBI AGCT 4 cut(s) 169, 469, 488, 582
AluI AGCT 4 cut(s) 169, 469, 488, 582
Alw21I GWGCWC 2 cut(s) 92, 378
Alw26I GTCTC 2 cut(s) 103, 305
AlwI GGATC 1 cut(s) 668
AoxI GGCC 2 cut(s) 317, 415
ApeKI GCWGC 2 cut(s) 485, 624
ApoI RAATTY 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 2 cut(s) 266, 415
AvaII GGWCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 92, 378
BbvI GCAGC 2 cut(s) 497, 611
BccI CCATC 3 cut(s) 257, 277, 536
BceAI ACGGC 2 cut(s) 179, 235
BciT130I CCWGG 2 cut(s) 229, 316
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 2 cut(s) 162, 331
BcoDI GTCTC 2 cut(s) 103, 305
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 2 cut(s) 486, 625
BlsI GCNGC 2 cut(s) 487, 626
Bme1390I CCNGG 2 cut(s) 229, 316
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 266, 415
BmiI GGNNCC 2 cut(s) 238, 607
BmrFI CCNGG 2 cut(s) 229, 316
BmrI ACTGGG 2 cut(s) 382, 422
BmsI GCATC 1 cut(s) 690
BmuI ACTGGG 2 cut(s) 382, 422
BpmI CTGGAG 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 388, 417, 677
Bse3DI GCAATG 2 cut(s) 598, 634
BseBI CCWGG 2 cut(s) 229, 316
BseDI CCNNGG 1 cut(s) 527
BseGI GGATG 3 cut(s) 33, 547, 750
BseMI GCAATG 2 cut(s) 598, 634
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 3 cut(s) 388, 417, 677
BseXI GCAGC 2 cut(s) 497, 611
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 2 cut(s) 319, 417
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 92, 378
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 103, 305
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 2 cut(s) 281, 446
BsnI GGCC 2 cut(s) 319, 417
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 92, 378
Bsp143I GATC 4 cut(s) 162, 331, 673, 725
Bsp19I CCATGG 1 cut(s) 527
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 319, 417
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 238, 607
BspPI GGATC 1 cut(s) 668
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 598, 634
BsrI ACTGG 3 cut(s) 388, 417, 677
BssECI CCNNGG 1 cut(s) 527
BssMI GATC 4 cut(s) 162, 331, 673, 725
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 2 cut(s) 229, 316
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 2 cut(s) 82, 176
BstC8I GCNNGC 4 cut(s) 260, 321, 685, 705
BstDEI CTNAG 2 cut(s) 84, 578
BstDSI CCRYGG 1 cut(s) 527
BstF5I GGATG 3 cut(s) 33, 547, 750
BstKTI GATC 4 cut(s) 165, 334, 676, 728
BstMAI GTCTC 2 cut(s) 103, 305
BstMBI GATC 4 cut(s) 162, 331, 673, 725
BstMWI GCNNNNNNNGC 2 cut(s) 135, 588
BstNI CCWGG 2 cut(s) 229, 316
BstSCI CCNGG 2 cut(s) 227, 314
BstV1I GCAGC 2 cut(s) 497, 611
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 2 cut(s) 319, 417
BtgI CCRYGG 1 cut(s) 527
BtsCI GGATG 3 cut(s) 33, 547, 750
BtsIMutI CAGTG 2 cut(s) 323, 395
Cac8I GCNNGC 4 cut(s) 260, 321, 685, 705
Cfr13I GGNCC 2 cut(s) 266, 415
Csp6I GTAC 1 cut(s) 112
CviAII CATG 5 cut(s) 263, 399, 458, 528, 741
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 84, 578
DpnI GATC 4 cut(s) 164, 333, 675, 727
DpnII GATC 4 cut(s) 162, 331, 673, 725
Eam1104I CTCTTC 2 cut(s) 82, 176
EarI CTCTTC 2 cut(s) 82, 176
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 227, 314
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 5 cut(s) 266, 402, 461, 531, 744
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 262, 398, 457, 527, 740
FbaI TGATCA 2 cut(s) 162, 331
Fnu4HI GCNGC 2 cut(s) 486, 625
FokI GGATG 2 cut(s) 20, 554
Fsp4HI GCNGC 2 cut(s) 486, 625
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 486, 625
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 2 cut(s) 319, 417
HapII CCGG 1 cut(s) 180
Hin1II CATG 5 cut(s) 266, 402, 461, 531, 744
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 3 cut(s) 183, 205, 395
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 199, 370, 455
Hpy188I TCNGA 5 cut(s) 85, 142, 162, 236, 274
Hpy8I GTNNAC 3 cut(s) 199, 370, 455
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 7 cut(s) 305, 323, 485, 500, 591, 627, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 588
HpyF3I CTNAG 2 cut(s) 84, 578
Hsp92II CATG 5 cut(s) 266, 402, 461, 531, 744
Ksp22I TGATCA 2 cut(s) 162, 331
Kzo9I GATC 4 cut(s) 162, 331, 673, 725
LguI GCTCTTC 1 cut(s) 176
Lsp1109I GCAGC 2 cut(s) 497, 611
LweI GCATC 1 cut(s) 690
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 57
MalI GATC 4 cut(s) 164, 333, 675, 727
MboI GATC 4 cut(s) 162, 331, 673, 725
MboII GAAGA 4 cut(s) 69, 72, 163, 729
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 2 cut(s) 92, 378
MluCI AATT 3 cut(s) 70, 306, 720
MlyI GAGTC 2 cut(s) 177, 404
MnlI CCTC 7 cut(s) 28, 47, 85, 519, 553, 647, 685
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 4 cut(s) 274, 519, 611, 745
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 229, 316
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 281, 446
MvaI CCWGG 2 cut(s) 229, 316
MwoI GCNNNNNNNGC 2 cut(s) 135, 588
NcoI CCATGG 1 cut(s) 527
NdeII GATC 4 cut(s) 162, 331, 673, 725
NlaIII CATG 5 cut(s) 266, 402, 461, 531, 744
NlaIV GGNNCC 2 cut(s) 238, 607
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 2 cut(s) 281, 446
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 487, 626
PleI GAGTC 2 cut(s) 177, 403
PpsI GAGTC 2 cut(s) 177, 403
PsiI TTATAA 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 227, 314
PspGI CCWGG 2 cut(s) 227, 314
PspN4I GGNNCC 2 cut(s) 238, 607
PspPI GGNCC 2 cut(s) 266, 415
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 4 cut(s) 274, 519, 611, 745
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 486, 625
Sau3AI GATC 4 cut(s) 162, 331, 673, 725
Sau96I GGNCC 2 cut(s) 266, 415
SchI GAGTC 2 cut(s) 177, 404
ScrFI CCNGG 2 cut(s) 229, 316
SduI GDGCHC 2 cut(s) 92, 378
SetI ASST 8 cut(s) 171, 204, 317, 471, 490, 584, 639, 670
SfaNI GCATC 1 cut(s) 690
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 4 cut(s) 274, 519, 611, 745
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 3 cut(s) 70, 306, 720
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 227, 314
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 174, 724
TasI AATT 3 cut(s) 70, 306, 720
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 330, 395
TseI GCWGC 2 cut(s) 485, 624
TspDTI ATGAA 6 cut(s) 34, 136, 334, 582, 645, 729
TspRI CASTG 2 cut(s) 330, 395
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 1 cut(s) 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.