Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007317

Physical Location & Seq

Genomic Coordinates Forward (+)

3596857 .. 3600151

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G051500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTCCTCTCGCACAGAAAGTAGAACCCTTTGTTTTTCTCTTCTCCCCTGCCTCTTGTTGTTTGCTCTGTTCACACCCACTTCTTCTTCTGCGAGAACTCTGCCTTCTGATTCTGGAAAAGTCTCGTTGGCTTTGTACTATGAGTCCCTTTGCCCTTACAGCGCCAACTTTATTGTCAATTACCTGGTCAAGCTCTTTGAAGATGACCTCATCTCCATTGTTGATCTGAAGCTTTCTCCTTGGGGTAATGCCAAGCTCAGAAGCAATGACACCTTCAGTTGCCAGCATGGTCCATCAGAATGCTTATTAAACACCGTGGAAGCCTGTGCCATCAAGATCTGGCCTGCACTGAATGATCATTTTCCTTTCATTTATTGCATTGAGAGTTTGGTTTACGAGCACAAGTATCCCCAGTGGGAGTCATGTTATGAGAAACTGGGTCTGGATTCAAAACCTATTGCTGAATGCTACAGTAGTGGACTTGGCAAAGAGCTTGAACTACAATATGCAGCTGAAACCAGTGCTCTCCAGCCTCCACATCAGTATGTGCCATGGGTAGTTGTGGATGGACTGCCAATTTATGAGGACTACGAAAACTTTCTGACCTATGTCTGCAATGCTTATAATGGCACCGCTGCCCTCAAGGCTTGCAGCAAACTATCCCTTAATACCATCCAAAAGGCAAGCACTAAATCTACCCTTTCCGTTGGTTGTAACGAGGGAAAGATGCCAGCGTTATTTGGAAGGATAAGATCAACCCTAATATCGTGGATGCGACAGATGAACATGGCAATTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

269

Amino Acids

30.02

Weight (kDa)

5.62

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07080
fragaria_vesca	FvH4_3g39450 FvH4_3g39450 FvH4_3g39450 FvH4_3g39450
malus_domestica	MD03G1061400.v1.1 MD11G1065100.v1.1
prunus_persica	Prupe.6G051500_v2.0.a1 Prupe.6G051500_v2.0.a1 Prupe.6G051500_v2.0.a1 Prupe.6G051500_v2.0.a1 Prupe.6G051500_v2.0.a1
pyrus_communis	pycom03g04920 pycom11g05520
rosa_chinensis	RchiOBHm_Chr5g0071101
rosa_laevigata	RLG00000036189
rosa_multiflora	Rmu_sc0003638.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009980
rosa_rugosa	Rorug05G0410300 Rorug05G0410300
rosa_samantha	Rh5AG466300 Rh5BG484700 Rh5CG509100 Rh5DG496000
rosa_wichuraiana	Rw5G043310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	632
AciI	CCGC	1 cut(s)	636
AcuI	CTGAAG	2 cut(s)	251, 262
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	203, 453, 500
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	5 cut(s)	196, 235, 259, 496, 515
AluI	AGCT	5 cut(s)	196, 235, 259, 496, 515
Alw21I	GWGCWC	2 cut(s)	405, 529
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	3 cut(s)	512, 638, 654
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	405, 529
BbvI	GCAGC	3 cut(s)	524, 625, 666
BccI	CCATC	4 cut(s)	304, 341, 563, 683
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	188
BciVI	GTATCC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	472
BfoI	RGCGCY	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	647
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	3 cut(s)	513, 639, 655
BlsI	GCNGC	3 cut(s)	514, 640, 656
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	2 cut(s)	409, 449
BmsI	GCATC	2 cut(s)	720, 765
BmuI	ACTGGG	2 cut(s)	409, 449
BoxI	GACNNNNGTC	1 cut(s)	611
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	242, 318, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	3 cut(s)	415, 444, 522
Bse3DI	GCAATG	2 cut(s)	274, 625
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	242, 318, 554
BseGI	GGATG	3 cut(s)	574, 675, 780
BseMI	GCAATG	2 cut(s)	274, 625
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	3 cut(s)	415, 444, 522
BseXI	GCAGC	3 cut(s)	524, 625, 666
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	405, 529
BslFI	GGGAC	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	308, 473
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	405, 529
Bsp143I	GATC	4 cut(s)	226, 339, 358, 755
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	274, 625
BsrI	ACTGG	3 cut(s)	415, 444, 522
BssECI	CCNNGG	3 cut(s)	242, 318, 554
BssMI	GATC	4 cut(s)	226, 339, 358, 755
BssT1I	CCWWGG	2 cut(s)	242, 554
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	319, 476
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	5 cut(s)	287, 348, 652, 688, 735
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	2 cut(s)	318, 554
BstF5I	GGATG	3 cut(s)	574, 675, 780
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	229, 342, 361, 758
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	226, 339, 358, 755
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 647
BstNI	CCWGG	1 cut(s)	188
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	524, 625, 666
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	318, 554
BtsCI	GGATG	3 cut(s)	574, 675, 780
BtsIMutI	CAGTG	3 cut(s)	350, 422, 529
Cac8I	GCNNGC	5 cut(s)	287, 348, 652, 688, 735
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	290, 426, 555, 790
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	4 cut(s)	228, 341, 360, 757
DpnII	GATC	4 cut(s)	226, 339, 358, 755
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	242, 554
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	251, 262
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	242, 554
ErhI	CCWWGG	2 cut(s)	242, 554
FaeI	CATG	4 cut(s)	293, 429, 558, 793
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	4 cut(s)	289, 425, 554, 789
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	513, 639, 655
FokI	GGATG	3 cut(s)	581, 662, 787
Fsp4HI	GCNGC	3 cut(s)	513, 639, 655
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	513, 639, 655
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	293, 429, 558, 793
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	113, 146, 422, 449
Hpy166II	GTNNAC	3 cut(s)	75, 397, 482
Hpy188I	TCNGA	5 cut(s)	112, 231, 263, 301, 606
Hpy188III	TCNNGA	3 cut(s)	117, 337, 446
Hpy8I	GTNNAC	3 cut(s)	75, 397, 482
HpyAV	CCTTC	3 cut(s)	117, 286, 741
HpyCH4III	ACNGT	2 cut(s)	319, 476
HpyCH4V	TGCA	5 cut(s)	350, 381, 512, 618, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 647
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	293, 429, 558, 793
HspAI	GCGC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	226, 339, 358, 755
Lsp1109I	GCAGC	3 cut(s)	524, 625, 666
LweI	GCATC	2 cut(s)	720, 765
MabI	ACCWGGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	4 cut(s)	228, 341, 360, 757
MboI	GATC	4 cut(s)	226, 339, 358, 755
MboII	GAAGA	4 cut(s)	35, 78, 81, 215
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	405, 529
MluCI	AATT	3 cut(s)	181, 579, 795
MlyI	GAGTC	2 cut(s)	155, 431
MnlI	CCTC	7 cut(s)	19, 65, 221, 546, 580, 653, 715
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	311, 669
MslI	CAYNNNNRTG	2 cut(s)	301, 546
MspA1I	CMGCKG	2 cut(s)	515, 638
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	2 cut(s)	308, 473
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	162, 647
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	226, 339, 358, 755
NlaIII	CATG	4 cut(s)	293, 429, 558, 793
NlaIV	GGNNCC	1 cut(s)	634
PctI	GAATGC	2 cut(s)	308, 473
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	113, 449
PkrI	GCNGC	3 cut(s)	514, 640, 656
PleI	GAGTC	2 cut(s)	154, 430
PpsI	GAGTC	2 cut(s)	154, 430
PshAI	GACNNNNGTC	1 cut(s)	611
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	2 cut(s)	301, 546
SaqAI	TTAA	2 cut(s)	311, 669
SatI	GCNGC	3 cut(s)	513, 639, 655
Sau3AI	GATC	4 cut(s)	226, 339, 358, 755
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	155, 431
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	405, 529
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	720, 765
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	301, 546
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	181, 579, 795
SsiI	CCGC	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	242, 554
TaaI	ACNGT	2 cut(s)	319, 476
TasI	AATT	3 cut(s)	181, 579, 795
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	113, 449
Tru1I	TTAA	2 cut(s)	311, 669
Tru9I	TTAA	2 cut(s)	311, 669
TscAI	CASTG	3 cut(s)	357, 422, 529
TseI	GCWGC	3 cut(s)	512, 638, 654
TspDTI	ATGAA	2 cut(s)	361, 800
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	3 cut(s)	357, 422, 529
VpaK11BI	GGWCC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.