FvH4_3g39450
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007317
Physical Location & Seq
Reverse (-)
33565180 .. 33568771
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39450.t2

Sequence Viewer

Length: 807 bp
ATGGCTTTCGCTAGCAAGACCCTTTCGTTTTCTCTAGGTTTCGGGTTTTTGTTGTTGTTGCTATGGTCTCCCCACACATGTTCTGCTTCGGCTAGAAGTTTTATGCCTTTGGAATCTGGCAAAGTGTCCTTGGCTCTGTACTATGAGTCCCTCTGCCCCTACAGCGCAAATTTTGTTGTGAATTACTTGGTCAAGCTCTTTGAGGATGATCTAATCTCTATTGTTGATCTCAAGCTTGTGCCTTGGGGCAATGCCAAGCTCAGAGGCAATGACACCTTTGTTTGCCAGCATGGTCCTTCTGAATGCTTATTAAACACGGTGGAAGCCTGTGCAATTAAGACCTGGCCTGCACTGAATGATCATTTTCCTTTCATTTATTGTGTTGAGAGTTTGGCTTATGAGGGCAAGTATCCCCAGTGGGAGTCATGTTATGAAAAACTGGGCCTTAACTCAACACCTATTGCTGAATGCTACAATAGTGGAACTGGCAAAGAGCTTGAACTACAATATGCAGCTGAAACTGATGCACTTCAGCCTCCACATCAGTATGTGCCGTGGGTAGTTGTGGATGGACAGCCACTTTATGAGGACTATGAAAACTTTCTAAGTTATGTCTGCAATGCTTATAATGGCACCGCAATGCTCAAGGCTTGCAATAAAGTGTACCTCAATTCTATCCAAATGGGAAAGGAAAAACCTAGCGATCCAGTCAACTGTAATGAGGGAAAGATGCCAGCATTAATTGGAAGGATTCGATCAGCTCTAACTTCGTGGATGAATCAGGTGAACATGGCATTTTGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

269

Amino Acids

30.07

Weight (kDa)

5.03

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 44 - 146 1.3e-31 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 632
AciI CCGC 1 cut(s) 636
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 2 cut(s) 140, 665
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 6 cut(s) 196, 235, 259, 496, 515, 761
AluI AGCT 6 cut(s) 196, 235, 259, 496, 515, 761
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 698
AoxI GGCC 2 cut(s) 344, 442
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 169
AseI ATTAAT 1 cut(s) 740
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 293, 442
AsuHPI GGTGA 1 cut(s) 796
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 524
BccI CCATC 1 cut(s) 563
BceAI ACGGC 1 cut(s) 538
BciT130I CCWGG 1 cut(s) 343
BciVI GTATCC 1 cut(s) 420
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 4 cut(s) 12, 35, 93, 699
BfmI CTRYAG 1 cut(s) 160
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 293, 442
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 2 cut(s) 409, 449
BmsI GCATC 2 cut(s) 514, 720
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 2 cut(s) 409, 449
BpuEI CTTGAG 2 cut(s) 215, 629
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 129, 242, 554
Bse1I ACTGG 4 cut(s) 415, 444, 490, 707
Bse3DI GCAATG 4 cut(s) 256, 274, 625, 645
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 3 cut(s) 129, 242, 554
BseGI GGATG 3 cut(s) 211, 574, 780
BseMI GCAATG 4 cut(s) 256, 274, 625, 645
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 4 cut(s) 415, 444, 490, 707
BseXI GCAGC 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 2 cut(s) 346, 444
BshNI GGYRCC 1 cut(s) 632
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 2 cut(s) 308, 473
BsnI GGCC 2 cut(s) 346, 444
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 5 cut(s) 208, 226, 358, 703, 755
BspACI CCGC 1 cut(s) 636
BspANI GGCC 2 cut(s) 346, 444
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 634
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 4 cut(s) 256, 274, 625, 645
BsrI ACTGG 4 cut(s) 415, 444, 490, 707
BssECI CCNNGG 3 cut(s) 129, 242, 554
BssMI GATC 5 cut(s) 208, 226, 358, 703, 755
BssT1I CCWWGG 2 cut(s) 129, 242
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 319, 716
BstC8I GCNNGC 5 cut(s) 13, 287, 348, 652, 735
BstDEI CTNAG 2 cut(s) 260, 605
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 3 cut(s) 211, 574, 780
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 5 cut(s) 211, 229, 361, 706, 758
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 5 cut(s) 208, 226, 358, 703, 755
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 524
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 346, 444
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 211, 574, 780
BtsIMutI CAGTG 2 cut(s) 350, 422
Cac8I GCNNGC 5 cut(s) 13, 287, 348, 652, 735
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 293, 442
Csp6I GTAC 2 cut(s) 139, 664
CviAII CATG 4 cut(s) 78, 290, 426, 790
CviQI GTAC 2 cut(s) 139, 664
DdeI CTNAG 2 cut(s) 260, 605
DpnI GATC 5 cut(s) 210, 228, 360, 705, 757
DpnII GATC 5 cut(s) 208, 226, 358, 703, 755
Eco130I CCWWGG 2 cut(s) 129, 242
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 129, 242
ErhI CCWWGG 2 cut(s) 129, 242
FaeI CATG 4 cut(s) 81, 293, 429, 793
FaqI GGGAC 1 cut(s) 133
FatI CATG 4 cut(s) 77, 289, 425, 789
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 3 cut(s) 218, 581, 787
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 4 cut(s) 12, 35, 93, 699
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 513
HaeIII GGCC 2 cut(s) 346, 444
HhaI GCGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 81, 293, 429, 793
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 113, 146, 422, 751, 778
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 3 cut(s) 664, 712, 787
Hpy188I TCNGA 2 cut(s) 263, 301
Hpy8I GTNNAC 3 cut(s) 664, 712, 787
HpyAV CCTTC 2 cut(s) 306, 741
HpyCH4III ACNGT 2 cut(s) 319, 716
HpyCH4V TGCA 6 cut(s) 332, 350, 512, 527, 618, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 260, 605
Hsp92II CATG 4 cut(s) 81, 293, 429, 793
HspAI GCGC 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 208, 226, 358, 703, 755
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 514, 720
MaeI CTAG 4 cut(s) 12, 35, 93, 699
MalI GATC 5 cut(s) 210, 228, 360, 705, 757
MboI GATC 5 cut(s) 208, 226, 358, 703, 755
MluCI AATT 5 cut(s) 169, 181, 333, 670, 741
MlyI GAGTC 2 cut(s) 155, 431
MnlI CCTC 8 cut(s) 161, 196, 257, 394, 546, 580, 677, 715
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 4 cut(s) 311, 336, 447, 740
MslI CAYNNNNRTG 2 cut(s) 546, 638
MspA1I CMGCKG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 2 cut(s) 308, 473
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 5 cut(s) 208, 226, 358, 703, 755
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 4 cut(s) 81, 293, 429, 793
NlaIV GGNNCC 1 cut(s) 634
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PctI GAATGC 2 cut(s) 308, 473
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 3 cut(s) 113, 751, 778
PkrI GCNGC 1 cut(s) 514
PleI GAGTC 2 cut(s) 154, 430
PpsI GAGTC 2 cut(s) 154, 430
PscI ACATGT 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 740
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 2 cut(s) 293, 442
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 140, 665
RsaNI GTAC 2 cut(s) 139, 664
RseI CAYNNNNRTG 2 cut(s) 546, 638
SaqAI TTAA 4 cut(s) 311, 336, 447, 740
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 5 cut(s) 208, 226, 358, 703, 755
Sau96I GGNCC 2 cut(s) 293, 442
SchI GAGTC 2 cut(s) 155, 431
ScrFI CCNGG 1 cut(s) 343
SfaNI GCATC 2 cut(s) 514, 720
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 546, 638
SmlI CTYRAG 2 cut(s) 230, 644
SmoI CTYRAG 2 cut(s) 230, 644
Sse9I AATT 5 cut(s) 169, 181, 333, 670, 741
SsiI CCGC 1 cut(s) 636
SspMI CTAG 4 cut(s) 12, 35, 93, 699
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 2 cut(s) 129, 242
TaaI ACNGT 2 cut(s) 319, 716
TaqI TCGA 1 cut(s) 754
TasI AATT 5 cut(s) 169, 181, 333, 670, 741
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 3 cut(s) 113, 751, 778
Tru1I TTAA 4 cut(s) 311, 336, 447, 740
Tru9I TTAA 4 cut(s) 311, 336, 447, 740
TscAI CASTG 2 cut(s) 357, 422
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 361, 447, 609, 791
TspRI CASTG 2 cut(s) 357, 422
VpaK11BI GGWCC 1 cut(s) 293
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 4 cut(s) 12, 35, 93, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.