Rh5DG496000
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007317
Physical Location & Seq
Reverse (-)
77943317 .. 77947108
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG496000.1

Sequence Viewer

Length: 777 bp
ATGGCTTTCTCTAGCAAGACCCTTTCGTTTTCTCTTGGTTTATGGTTTTCGTTGTTGTTGCTATGGTCTCCCTCCACTTGTTCTGCTTCAGCTAGAATTTTTCTGCCTTTGGAATCTGGCAAAGTCTCCTTGGCTTTGTACTATGAGTCCCTCTGCCCCTACAGCGCTAATTTCGTGGTTAATTACTTGGTCAAGCTCTTTGAAGATGATCTAATCTCCATTGTTGATCTCGAGCTTGTGCCTTGGGGCAATGCCAAGCTCAGAGGCAACGACACTTTTGATTGCCAGCATGGTCCATCTGAATGCTTATTGAACACGGTGGAAGCCTGTGCCATTGAGACCTGGCCTGCACTGAATGATCATTTTCCTTTCATTTATTGTGTTGAGAGTTTGGTTTACGAGCACAAGTATCCCCAGTGGGAGTCATGTTATGAGAAACTGGGCCTGAACTCAACACTTATTGCTGAATGCTACAGTAGTGGACATGGCAAAGAGCTTGAACTAAAGTATGCAGCTGAAACCAATGCACTACAGCCTCCACATCAGTATGTGCCATGGGTAGTTGTGGATGGACAGCCACTTTACGAGGACTATGAAAACTTTCTAAGCTATGTCTGCAACGCTTATAATGGCACCACAATGCTCAAGGGCTGCAATGAATACCTCAATACTATCCAAATGGCAGGGGAAAAACCTAACGATCCAGTCGCCTGCAAGGAGGGAAAGATGCCAGCATTATTTGGAAGAATTCGATCAACTCTAACTTCATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

258

Amino Acids

29.09

Weight (kDa)

4.75

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 44 - 146 8e-32 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 632
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 2 cut(s) 96, 747
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 140
AfeI AGCGCT 1 cut(s) 166
AgsI TTSAA 3 cut(s) 203, 313, 500
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 7 cut(s) 92, 196, 235, 259, 496, 515, 609
AluI AGCT 7 cut(s) 92, 196, 235, 259, 496, 515, 609
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 3 cut(s) 72, 130, 332
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 2 cut(s) 344, 442
ApeKI GCWGC 2 cut(s) 512, 651
ApoI RAATTY 2 cut(s) 96, 747
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 293, 442
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 524, 638
BccI CCATC 2 cut(s) 304, 563
BciT130I CCWGG 1 cut(s) 343
BciVI GTATCC 1 cut(s) 420
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 3 cut(s) 72, 130, 332
BfaI CTAG 2 cut(s) 12, 93
BfmI CTRYAG 3 cut(s) 160, 472, 530
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 1 cut(s) 420
BisI GCNGC 2 cut(s) 513, 652
BlsI GCNGC 2 cut(s) 514, 653
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 293, 442
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 2 cut(s) 409, 449
BmsI GCATC 1 cut(s) 717
BmuI ACTGGG 2 cut(s) 409, 449
BpuEI CTTGAG 1 cut(s) 629
BsaI GGTCTC 2 cut(s) 72, 332
BsaJI CCNNGG 3 cut(s) 129, 242, 554
Bse1I ACTGG 3 cut(s) 415, 444, 704
Bse3DI GCAATG 2 cut(s) 256, 661
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 3 cut(s) 129, 242, 554
BseGI GGATG 2 cut(s) 574, 777
BseMI GCAATG 2 cut(s) 256, 661
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 415, 444, 704
BseXI GCAGC 2 cut(s) 524, 638
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 2 cut(s) 346, 444
BshNI GGYRCC 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 72, 130, 332
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 2 cut(s) 308, 473
BsnI GGCC 2 cut(s) 346, 444
Bso31I GGTCTC 2 cut(s) 72, 332
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 5 cut(s) 208, 226, 358, 700, 752
Bsp19I CCATGG 1 cut(s) 554
BspANI GGCC 2 cut(s) 346, 444
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 634
BspPI GGATC 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 2 cut(s) 72, 332
BsrDI GCAATG 2 cut(s) 256, 661
BsrI ACTGG 3 cut(s) 415, 444, 704
BssECI CCNNGG 3 cut(s) 129, 242, 554
BssMI GATC 5 cut(s) 208, 226, 358, 700, 752
BssT1I CCWWGG 3 cut(s) 129, 242, 554
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 319, 476
BstC8I GCNNGC 4 cut(s) 287, 348, 712, 732
BstDEI CTNAG 2 cut(s) 260, 605
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 574, 777
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 5 cut(s) 211, 229, 361, 703, 755
BstMAI GTCTC 3 cut(s) 72, 130, 332
BstMBI GATC 5 cut(s) 208, 226, 358, 700, 752
BstMWI GCNNNNNNNGC 2 cut(s) 162, 615
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 3 cut(s) 160, 472, 530
BstV1I GCAGC 2 cut(s) 524, 638
BsuI GTATCC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 346, 444
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 2 cut(s) 574, 777
BtsIMutI CAGTG 2 cut(s) 350, 422
Cac8I GCNNGC 4 cut(s) 287, 348, 712, 732
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 293, 442
Csp6I GTAC 1 cut(s) 139
CviAII CATG 5 cut(s) 290, 426, 485, 555, 768
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 260, 605
DpnI GATC 5 cut(s) 210, 228, 360, 702, 754
DpnII GATC 5 cut(s) 208, 226, 358, 700, 752
Eco130I CCWWGG 3 cut(s) 129, 242, 554
Eco31I GGTCTC 2 cut(s) 72, 332
Eco47I GGWCC 1 cut(s) 293
Eco47III AGCGCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 129, 242, 554
ErhI CCWWGG 3 cut(s) 129, 242, 554
FaeI CATG 5 cut(s) 293, 429, 488, 558, 771
FaqI GGGAC 1 cut(s) 133
FatI CATG 5 cut(s) 289, 425, 484, 554, 767
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 513, 652
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 2 cut(s) 513, 652
FspBI CTAG 2 cut(s) 12, 93
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 513, 652
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 2 cut(s) 346, 444
HhaI GCGC 1 cut(s) 167
Hin1II CATG 5 cut(s) 293, 429, 488, 558, 771
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 3 cut(s) 113, 146, 422
Hpy166II GTNNAC 2 cut(s) 397, 482
Hpy188I TCNGA 2 cut(s) 263, 301
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 397, 482
HpyCH4III ACNGT 2 cut(s) 319, 476
HpyCH4V TGCA 6 cut(s) 350, 512, 527, 618, 654, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 615
HpyF3I CTNAG 2 cut(s) 260, 605
Hsp92II CATG 5 cut(s) 293, 429, 488, 558, 771
HspAI GCGC 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 208, 226, 358, 700, 752
Lsp1109I GCAGC 2 cut(s) 524, 638
LweI GCATC 1 cut(s) 717
MaeI CTAG 2 cut(s) 12, 93
MalI GATC 5 cut(s) 210, 228, 360, 702, 754
MboI GATC 5 cut(s) 208, 226, 358, 700, 752
MboII GAAGA 2 cut(s) 215, 756
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 96, 169, 181, 747
MlyI GAGTC 2 cut(s) 155, 431
MnlI CCTC 7 cut(s) 82, 161, 257, 546, 580, 674, 712
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 4 cut(s) 301, 546, 638, 772
MspA1I CMGCKG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 2 cut(s) 308, 473
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 162, 615
NcoI CCATGG 1 cut(s) 554
NdeII GATC 5 cut(s) 208, 226, 358, 700, 752
NlaIII CATG 5 cut(s) 293, 429, 488, 558, 771
NlaIV GGNNCC 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 230
PctI GAATGC 2 cut(s) 308, 473
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 514, 653
PleI GAGTC 2 cut(s) 154, 430
PpsI GAGTC 2 cut(s) 154, 430
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 2 cut(s) 293, 442
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 4 cut(s) 301, 546, 638, 772
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 513, 652
Sau3AI GATC 5 cut(s) 208, 226, 358, 700, 752
Sau96I GGNCC 2 cut(s) 293, 442
SchI GAGTC 2 cut(s) 155, 431
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 3 cut(s) 160, 472, 530
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 4 cut(s) 301, 546, 638, 772
SmlI CTYRAG 2 cut(s) 230, 644
SmoI CTYRAG 2 cut(s) 230, 644
Sse9I AATT 4 cut(s) 96, 169, 181, 747
SspMI CTAG 2 cut(s) 12, 93
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 3 cut(s) 129, 242, 554
TaaI ACNGT 2 cut(s) 319, 476
TaqI TCGA 2 cut(s) 231, 751
TasI AATT 4 cut(s) 96, 169, 181, 747
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 357, 422
TseI GCWGC 2 cut(s) 512, 651
TspDTI ATGAA 4 cut(s) 361, 609, 672, 756
TspRI CASTG 2 cut(s) 357, 422
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 96, 747
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 2 cut(s) 12, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.