MD11G1065100.v1.1
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007317
Physical Location & Seq
Forward (+)
5585124 .. 5587761
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1065100.v1.1.491

Sequence Viewer

Length: 801 bp
ATGGCGTCCTCTCGGCTCGAAAGTAGAACCCTTTCTTTTTCTCTTCTGTCCTGCCTCTTCTTGGTTGCTATGTTCACACCCCCTTCTTCTTCCGCAGCCAGAACTCCGCCTTCGGATTCTGGTAAAGTTTCGTTGGCTTTGTATTATGAGTCCCTCTGCCCCTACAGTGCCAACTTCATTGTGAATTACCTTGTCAAGCTCTTCGAAGACGACCTCATCTCCATTGTTGATCTCAAGCTTTCTCCTTGGGGTAATGCCAAGCTCAGAAGCAACGACACATTCACTTGCCAGCATGGTCCGTCTGAATGTTTATTGAACACTGTGGAAGCCTGTGCGATCGAGATCTGGCCTGCACTGAACGATCATTTTCCTTTCATTTATTGCGTTGAGAGTTTGGTTTATGAGCACAAGTATCCCCAGTGGGAGTCATGTTACGAGAAACTGGGCTTGGATTCAAAACCTATTGCTGAATGCTACAGCAGTGGACTTGGCAAAGAGCTTGAACTACAGTATGCAGCTGAAACCAGTGCACTCCAGCCTCCGCATCAGTATGTGCCATGGGTAGTTGTGGATGGACAGCCACTTTATGAGGACTACGAAAACTTCCTGAGCTATGTCTGCAATGCCTATAATGGCACCACCGCCCTCGAGGCCTGCAGTAAAATATCCCTCAATACCAGGAAAAGTTCCAAATCTACCCATTCCGTTCGCTGCGAGGGAAATATGCCAGCAGTATTAGGAAGAATAGGATCGACCATAAAATCGTGGATCCGTCAAATGAACCTGGCAATTTGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

267

Amino Acids

29.77

Weight (kDa)

5.28

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 45 - 147 3.8e-32 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 635
AciI CCGC 4 cut(s) 93, 107, 542, 642
AclWI GGATC 3 cut(s) 757, 763, 776
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 3 cut(s) 316, 456, 503
AjnI CCWGG 2 cut(s) 677, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 6 cut(s) 199, 238, 262, 499, 518, 612
AluI AGCT 6 cut(s) 199, 238, 262, 499, 518, 612
Alw21I GWGCWC 2 cut(s) 408, 532
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 3 cut(s) 757, 763, 776
Ama87I CYCGRG 1 cut(s) 647
AoxI GGCC 2 cut(s) 347, 651
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 3 cut(s) 95, 515, 711
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 768
BanI GGYRCC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 408, 532
BbvI GCAGC 3 cut(s) 107, 527, 698
BccI CCATC 1 cut(s) 566
BciT130I CCWGG 2 cut(s) 679, 785
BciVI GTATCC 1 cut(s) 423
BfmI CTRYAG 4 cut(s) 163, 475, 506, 655
BfuI GTATCC 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 650
BglII AGATCT 1 cut(s) 342
BisI GCNGC 3 cut(s) 96, 516, 712
BlsI GCNGC 3 cut(s) 97, 517, 713
Bme1390I CCNGG 2 cut(s) 679, 785
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 637, 770
BmrFI CCNGG 2 cut(s) 679, 785
BmrI ACTGGG 2 cut(s) 412, 452
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 2 cut(s) 412, 452
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 245, 557
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 418, 447, 525
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 2 cut(s) 679, 785
BseDI CCNNGG 2 cut(s) 245, 557
BseGI GGATG 2 cut(s) 577, 801
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 277, 599
BseNI ACTGG 3 cut(s) 418, 447, 525
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 3 cut(s) 107, 527, 698
BsgI GTGCAG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 349, 653
BshNI GGYRCC 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 408, 532
BsiHKCI CYCGRG 1 cut(s) 647
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 349, 653
BsoBI CYCGRG 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 408, 532
Bsp143I GATC 6 cut(s) 229, 336, 342, 361, 749, 768
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 4 cut(s) 93, 107, 542, 642
BspANI GGCC 2 cut(s) 349, 653
BspCNI CTCAG 2 cut(s) 276, 600
BspLI GGNNCC 2 cut(s) 637, 770
BspMAI CTGCAG 1 cut(s) 659
BspPI GGATC 3 cut(s) 757, 763, 776
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 3 cut(s) 418, 447, 525
BssECI CCNNGG 2 cut(s) 245, 557
BssMI GATC 6 cut(s) 229, 336, 342, 361, 749, 768
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 245, 557
Bst2UI CCWGG 2 cut(s) 679, 785
Bst4CI ACNGT 3 cut(s) 167, 322, 510
Bst6I CTCTTC 3 cut(s) 48, 62, 206
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 4 cut(s) 290, 351, 655, 729
BstDEI CTNAG 2 cut(s) 263, 608
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 2 cut(s) 577, 801
BstKTI GATC 6 cut(s) 232, 339, 345, 364, 752, 771
BstMBI GATC 6 cut(s) 229, 336, 342, 361, 749, 768
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 2 cut(s) 618, 650
BstNI CCWGG 2 cut(s) 679, 785
BstSCI CCNGG 2 cut(s) 677, 783
BstSFI CTRYAG 4 cut(s) 163, 475, 506, 655
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 107, 527, 698
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 342, 768
BstYI RGATCY 2 cut(s) 342, 768
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 2 cut(s) 349, 653
BtgI CCRYGG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 577, 801
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 6 cut(s) 172, 318, 353, 425, 487, 532
Cac8I GCNNGC 4 cut(s) 290, 351, 655, 729
Cfr13I GGNCC 1 cut(s) 296
CviAII CATG 3 cut(s) 293, 429, 558
DdeI CTNAG 2 cut(s) 263, 608
DpnI GATC 6 cut(s) 231, 338, 344, 363, 751, 770
DpnII GATC 6 cut(s) 229, 336, 342, 361, 749, 768
Eam1104I CTCTTC 3 cut(s) 48, 62, 206
EarI CTCTTC 3 cut(s) 48, 62, 206
EciI GGCGGA 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 245, 557
Eco147I AGGCCT 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 677, 783
EcoT14I CCWWGG 2 cut(s) 245, 557
ErhI CCWWGG 2 cut(s) 245, 557
FaeI CATG 3 cut(s) 296, 432, 561
FaqI GGGAC 1 cut(s) 136
FatI CATG 3 cut(s) 292, 428, 557
Fnu4HI GCNGC 3 cut(s) 96, 516, 712
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 96, 516, 712
GluI GCNGC 3 cut(s) 96, 516, 712
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 2 cut(s) 349, 653
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 296, 432, 561
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 4 cut(s) 116, 149, 425, 452
Hpy166II GTNNAC 3 cut(s) 75, 485, 530
Hpy188I TCNGA 3 cut(s) 115, 266, 304
Hpy188III TCNNGA 2 cut(s) 340, 607
Hpy8I GTNNAC 3 cut(s) 75, 485, 530
HpyAV CCTTC 2 cut(s) 93, 120
HpyCH4III ACNGT 3 cut(s) 167, 322, 510
HpyCH4V TGCA 5 cut(s) 353, 515, 530, 621, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 618, 650
HpyF3I CTNAG 2 cut(s) 263, 608
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 296, 432, 561
Kzo9I GATC 6 cut(s) 229, 336, 342, 361, 749, 768
LguI GCTCTTC 1 cut(s) 206
Lsp1109I GCAGC 3 cut(s) 107, 527, 698
LweI GCATC 1 cut(s) 553
MaeIII GTNAC 1 cut(s) 431
MalI GATC 6 cut(s) 231, 338, 344, 363, 751, 770
MboI GATC 6 cut(s) 229, 336, 342, 361, 749, 768
MboII GAAGA 7 cut(s) 35, 49, 78, 81, 193, 218, 753
MflI RGATCY 2 cut(s) 342, 768
MhlI GDGCHC 2 cut(s) 408, 532
MluCI AATT 2 cut(s) 184, 789
MlyI GAGTC 2 cut(s) 158, 434
MroXI GAANNNNTTC 1 cut(s) 31
MslI CAYNNNNRTG 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 679, 785
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 679, 785
MwoI GCNNNNNNNGC 2 cut(s) 618, 650
NcoI CCATGG 1 cut(s) 557
NdeII GATC 6 cut(s) 229, 336, 342, 361, 749, 768
NlaIII CATG 3 cut(s) 296, 432, 561
NlaIV GGNNCC 2 cut(s) 637, 770
NspV TTCGAA 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 647
PceI AGGCCT 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 116, 452
PkrI GCNGC 3 cut(s) 97, 517, 713
Ple19I CGATCG 1 cut(s) 339
PleI GAGTC 2 cut(s) 157, 433
PpsI GAGTC 2 cut(s) 157, 433
Psp6I CCWGG 2 cut(s) 677, 783
PspGI CCWGG 2 cut(s) 677, 783
PspN4I GGNNCC 2 cut(s) 637, 770
PspPI GGNCC 1 cut(s) 296
PspXI VCTCGAGB 1 cut(s) 647
PstI CTGCAG 1 cut(s) 659
PsuI RGATCY 2 cut(s) 342, 768
PvuI CGATCG 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 206
SatI GCNGC 3 cut(s) 96, 516, 712
Sau3AI GATC 6 cut(s) 229, 336, 342, 361, 749, 768
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 158, 434
ScrFI CCNGG 2 cut(s) 679, 785
SduI GDGCHC 2 cut(s) 408, 532
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 4 cut(s) 163, 475, 506, 655
Sfr274I CTCGAG 1 cut(s) 647
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 233, 647
SmoI CTYRAG 2 cut(s) 233, 647
Sse9I AATT 2 cut(s) 184, 789
SseBI AGGCCT 1 cut(s) 653
SsiI CCGC 4 cut(s) 93, 107, 542, 642
StuI AGGCCT 1 cut(s) 653
StyD4I CCNGG 2 cut(s) 677, 783
StyI CCWWGG 2 cut(s) 245, 557
TaaI ACNGT 3 cut(s) 167, 322, 510
TaqI TCGA 5 cut(s) 18, 204, 339, 648, 752
TasI AATT 2 cut(s) 184, 789
TfiI GAWTC 2 cut(s) 116, 452
TscAI CASTG 6 cut(s) 172, 325, 360, 425, 487, 532
TseI GCWGC 3 cut(s) 95, 515, 711
TspDTI ATGAA 3 cut(s) 166, 364, 794
TspGWI ACGGA 3 cut(s) 288, 694, 761
TspRI CASTG 6 cut(s) 172, 325, 360, 425, 487, 532
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.