Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011395

Physical Location & Seq

Genomic Coordinates Forward (+)

2263037 .. 2264553

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGGAGCTACGTCTTGTTCAGGGCTCGTTGTTGAAGAAGGTTCTAGAATCAATCAAAGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGCACTGGGTTCTCACTCCAAGCTATGGATTCGAGTCACGTTGCTCTGGTGTCTCTCTTGCTAAGATCCGAAGGCTTCGAACACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCAACATGTCGAAGATGCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAGGCTGATGACGGCGGCGACACCGTTACCTTCATGTTTGAGAGCCCCACGCAAGACAAGATTGCTGATTTTGAGATGAAGTTGATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACCACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGGCGTGAAGTTTTCTACTGCCGGTGACATTGGAACCGCTAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATGCAATTGTGATAGAGATGAAGGAGCCAGTGTCTCTCTCATTTGCCCTGAGGTACATGAATTCCTTCACAAAGGCAACTCCATTGTCAGACACAGTGACAATCAGCTTATCGTCGGAGTTGCCAGTGGTTGTGGAGTATAAGGTTGCTGAGATGGGTTACATTCGTTACTACTTGGCTCCTAAGATTGAAGAAGAAGAAGACACTAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006298 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0019985 GO:0022616 GO:0030234 GO:0030337 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043626 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044796 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0098772 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166

Pfam Domains

Protein Families

PCNA_C PCNA_N

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

4.6

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCNA_N	PF00705	1 - 125	5.9e-59	Proliferating cell nuclear antigen, N-terminal domain
Rad9	PF04139	13 - 215	2.8e-06	Rad9
PCNA_C	PF02747	127 - 254	2.7e-60	Proliferating cell nuclear antigen, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07370 AT2G29570
fragaria_vesca	FvH4_3g37710 FvH4_6g24870
malus_domestica	MD03G1078300.v1.1 MD11G1083000.v1.1 MD13G1227300.v1.1
prunus_persica	Prupe.6G063300_v2.0.a1
pyrus_communis	pycom03g06260 pycom11g07110
rosa_chinensis	RchiOBHm_Chr5g0067981
rosa_laevigata	RLG00000035949
rosa_multiflora	Rmu_sc0000435.1_g000036
rosa_roxburghii	Rroxscaffold_1G00012620 Rroxscaffold_1G00013330
rosa_rugosa	Rorug05G0387000
rosa_samantha	Rh5BG463400 Rh5CG485300 Rh5DG477400
rosa_wichuraiana	Rw5G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	2 cut(s)	285, 531
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	79, 637
AfaI	GTAC	2 cut(s)	398, 632
AfiI	CCNNNNNNNGG	2 cut(s)	99, 118
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	37, 767
AjnI	CCWGG	1 cut(s)	434
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	10, 116, 684
AluI	AGCT	3 cut(s)	10, 116, 684
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	150, 615
AlwI	GGATC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	79, 637
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	79, 256, 476, 530
AsuII	TTCGAA	1 cut(s)	171
AxyI	CCTNAGG	1 cut(s)	626
BanII	GRGCYC	2 cut(s)	29, 317
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	3 cut(s)	275, 349, 724
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	150, 615
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	178, 561
BglII	AGATCT	2 cut(s)	61, 448
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	436
BmiI	GGNNCC	3 cut(s)	529, 603, 756
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	6 cut(s)	64, 173, 222, 379, 405, 568
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	783
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 118
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	3 cut(s)	103, 605, 701
Bse21I	CCTNAGG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	213, 420
BseLI	CCNNNNNNNGG	2 cut(s)	99, 118
BseMII	CTCAG	5 cut(s)	384, 466, 559, 617, 717
BseNI	ACTGG	3 cut(s)	103, 605, 701
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	3 cut(s)	246, 516, 572
BslI	CCNNNNNNNGG	2 cut(s)	99, 118
BsmAI	GTCTC	2 cut(s)	150, 615
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	29, 317, 546
Bsp143I	GATC	4 cut(s)	61, 158, 448, 477
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	2 cut(s)	285, 531
BspCNI	CTCAG	5 cut(s)	385, 465, 558, 618, 718
BspLI	GGNNCC	3 cut(s)	529, 603, 756
BspPI	GGATC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	3 cut(s)	103, 605, 701
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	61, 158, 448, 477
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	5 cut(s)	295, 368, 472, 562, 673
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	7 cut(s)	155, 393, 452, 545, 626, 726, 759
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	213, 420
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	4 cut(s)	64, 161, 451, 480
BstMAI	GTCTC	2 cut(s)	150, 615
BstMBI	GATC	4 cut(s)	61, 158, 448, 477
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	2 cut(s)	178, 561
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	3 cut(s)	61, 158, 448
BstYI	RGATCY	3 cut(s)	61, 158, 448
Bsu36I	CCTNAGG	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	213, 420
BtsIMutI	CAGTG	5 cut(s)	96, 373, 612, 678, 708
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	397, 631
CviAII	CATG	4 cut(s)	202, 223, 304, 634
CviQI	GTAC	2 cut(s)	397, 631
DdeI	CTNAG	7 cut(s)	155, 393, 452, 545, 626, 726, 759
DpnI	GATC	4 cut(s)	63, 160, 450, 479
DpnII	GATC	4 cut(s)	61, 158, 448, 477
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	29, 317
Eco81I	CCTNAGG	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	29, 317
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	205, 226, 307, 637
FaiI	YATR	7 cut(s)	119, 203, 224, 305, 362, 635, 717
FatI	CATG	4 cut(s)	201, 222, 303, 633
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	2 cut(s)	220, 427
FriOI	GRGCYC	2 cut(s)	29, 317
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	76
HapII	CCGG	3 cut(s)	246, 516, 572
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	205, 226, 307, 637
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	5 cut(s)	50, 122, 127, 193, 211
HpaII	CCGG	3 cut(s)	246, 516, 572
HphI	GGTGA	4 cut(s)	79, 256, 476, 530
Hpy166II	GTNNAC	3 cut(s)	70, 371, 565
Hpy188I	TCNGA	3 cut(s)	163, 667, 694
Hpy188III	TCNNGA	2 cut(s)	47, 409
Hpy8I	GTNNAC	3 cut(s)	70, 371, 565
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	7 cut(s)	34, 158, 310, 429, 488, 592, 652
HpyCH4III	ACNGT	5 cut(s)	295, 368, 472, 562, 673
HpyCH4IV	ACGT	2 cut(s)	13, 132
HpyCH4V	TGCA	2 cut(s)	444, 581
HpyF3I	CTNAG	7 cut(s)	155, 393, 452, 545, 626, 726, 759
HpySE526I	ACGT	2 cut(s)	13, 132
Hsp92II	CATG	4 cut(s)	205, 226, 307, 637
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	61, 158, 448, 477
LmnI	GCTCC	4 cut(s)	7, 95, 601, 760
LweI	GCATC	6 cut(s)	64, 173, 222, 379, 405, 568
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	13, 132
MaeIII	GTNAC	8 cut(s)	128, 295, 464, 484, 518, 673, 734, 743
MalI	GATC	4 cut(s)	63, 160, 450, 479
MboI	GATC	4 cut(s)	61, 158, 448, 477
MboII	GAAGA	7 cut(s)	49, 241, 587, 779, 782, 785, 788
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	3 cut(s)	61, 158, 448
MhlI	GDGCHC	3 cut(s)	29, 317, 546
MluCI	AATT	3 cut(s)	79, 582, 637
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	2 cut(s)	405, 621
MroXI	GAANNNNTTC	1 cut(s)	641
MslI	CAYNNNNRTG	2 cut(s)	206, 473
MspI	CCGG	3 cut(s)	246, 516, 572
MspR9I	CCNGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	4 cut(s)	61, 158, 448, 477
NlaIII	CATG	4 cut(s)	205, 226, 307, 637
NlaIV	GGNNCC	3 cut(s)	529, 603, 756
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	5 cut(s)	128, 464, 484, 518, 673
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	4 cut(s)	50, 122, 193, 211
PflMI	CCANNNNNTGG	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	529, 603, 756
PsuI	RGATCY	3 cut(s)	61, 158, 448
RsaI	GTAC	2 cut(s)	398, 632
RsaNI	GTAC	2 cut(s)	397, 631
RseI	CAYNNNNRTG	2 cut(s)	206, 473
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	4 cut(s)	61, 158, 448, 477
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	3 cut(s)	29, 317, 546
SfaNI	GCATC	6 cut(s)	64, 173, 222, 379, 405, 568
SfcI	CTRYAG	2 cut(s)	178, 561
SfuI	TTCGAA	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	206, 473
Sse9I	AATT	3 cut(s)	79, 582, 637
SsiI	CCGC	2 cut(s)	285, 531
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	5 cut(s)	295, 368, 472, 562, 673
TaiI	ACGT	2 cut(s)	16, 135
TaqI	TCGA	4 cut(s)	84, 125, 171, 227
TasI	AATT	3 cut(s)	79, 582, 637
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	4 cut(s)	50, 122, 193, 211
TscAI	CASTG	5 cut(s)	103, 373, 612, 678, 708
TseFI	GTSAC	5 cut(s)	128, 464, 484, 518, 673
Tsp45I	GTSAC	5 cut(s)	128, 464, 484, 518, 673
TspDTI	ATGAA	5 cut(s)	224, 292, 362, 611, 650
TspRI	CASTG	5 cut(s)	103, 373, 612, 678, 708
Van91I	CCANNNNNTGG	1 cut(s)	118
XapI	RAATTY	2 cut(s)	79, 637
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.