FvH4_3g37710

This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011395
Physical Location & Seq
Reverse (-)
32290576 .. 32293044
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37710.t1

Sequence Viewer

Length: 801 bp
ATGTTGGAGCTCCGATTGGTCCAGGGCTCGCTTCTCAAGAAGGTTCTGGAGTCCATCAAGGACCTGGTCACCGACGCCAACTTCGACTGCTCCGCCACCGGGTTCTCCCTCCAGGCCATGGACTCCAGCCACGTCGCCCTCGTCGCTCTGCTTCTCAGATCTGAAGGCTTCGAGCACTACCGCTGCGACCGGAGCATCTCCATGGGGATGAACCTCGGCAACATGTCCAAGATGCTCAAGTGCGCCGGCAACGATGACATCGTCACCCTCAAGGCTGACGACGGCAGCGATACCGTCACCTTCATGTTTGAGAGCCCCACACAAGATAAAATTTCTGATTTTGAGATGAAGCTGATGGACATCGACAGTGAGCACCTTGGAATTCCAGAGGCAGAATACCATGCTATTGTTAGGATGCCTTCTGCTGAGTTTGCCAGGATTTGCAAAGATCTCAGCGGCATTGGTGATACTGTTGTGATTTCTGTGACAAAGGAAGGAGTCAAGTTCTCTACAAGAGGGGATATCGGCACTGCTAATATTGTCTGTAGACAGAACACTACTGTTGACAAGCCTGAGGAAGCAACAATCATAGAGATGACTGAGCCAGTTTCATTGACATTTGCTCTGAGGTACATGAACTCCTTCACAAAAGCATCCCCCTTGTCAAACACAGTTACCATCAGCCTCTCTTCGGAACTGCCAGTTGTGGTTGAGTACAAGATTGCTGAGATGGGCTACATAAGGTTCTACTTGGCTCCAAAGATAGAAGAGGATGAAGAAGAGACAAAGCCTCAAGTTTGA

Protein Analysis

267

Amino Acids

29.42

Weight (kDa)

4.68

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCNA_N PF00705 1 - 125 1.3e-57 Proliferating cell nuclear antigen, N-terminal domain
PCNA_C PF02747 127 - 254 1.3e-60 Proliferating cell nuclear antigen, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07370 AT2G29570
fragaria_vesca FvH4_3g37710 FvH4_6g24870
malus_domestica MD03G1078300.v1.1 MD11G1083000.v1.1 MD13G1227300.v1.1
prunus_persica Prupe.6G063300_v2.0.a1
pyrus_communis pycom03g06260 pycom11g07110
rosa_chinensis RchiOBHm_Chr5g0067981
rosa_laevigata RLG00000035949
rosa_multiflora Rmu_sc0000435.1_g000036
rosa_roxburghii Rroxscaffold_1G00012620 Rroxscaffold_1G00013330
rosa_rugosa Rorug05G0387000
rosa_samantha Rh5BG463400 Rh5CG485300 Rh5DG477400
rosa_wichuraiana Rw5G041640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 547
AciI CCGC 3 cut(s) 93, 181, 456
AcsI RAATTY 2 cut(s) 330, 381
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 632, 716
AfiI CCNNNNNNNGG 3 cut(s) 99, 118, 691
AflIII ACRYGT 1 cut(s) 222
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 4 cut(s) 21, 63, 111, 434
AluBI AGCT 2 cut(s) 10, 352
AluI AGCT 2 cut(s) 10, 352
Alw21I GWGCWC 3 cut(s) 12, 177, 375
Alw26I GTCTC 1 cut(s) 776
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 183, 285
ApoI RAATTY 2 cut(s) 330, 381
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 19, 61
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 4 cut(s) 61, 256, 289, 476
AvaII GGWCC 2 cut(s) 19, 61
AxyI CCTNAGG 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanII GRGCYC 3 cut(s) 12, 29, 317
Bbv12I GWGCWC 3 cut(s) 12, 177, 375
BbvI GCAGC 2 cut(s) 170, 297
BccI CCATC 4 cut(s) 62, 349, 686, 724
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 4 cut(s) 23, 65, 113, 436
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 776
BfmI CTRYAG 1 cut(s) 544
BglII AGATCT 2 cut(s) 158, 448
BisI GCNGC 3 cut(s) 184, 286, 457
BlsI GCNGC 3 cut(s) 185, 287, 458
Bme1390I CCNGG 5 cut(s) 23, 65, 100, 113, 436
Bme18I GGWCC 2 cut(s) 19, 61
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 19, 61
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 5 cut(s) 23, 65, 100, 113, 436
BmsI GCATC 4 cut(s) 204, 222, 405, 662
BpmI CTGGAG 3 cut(s) 68, 95, 109
BpuEI CTTGAG 4 cut(s) 20, 221, 254, 777
BpuMI CCSGG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 22, 117, 201, 214, 376
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 118, 691
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 605, 701
Bse21I CCTNAGG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 4 cut(s) 23, 65, 113, 436
BseDI CCNNGG 5 cut(s) 22, 117, 201, 214, 376
BseGI GGATG 4 cut(s) 213, 420, 653, 778
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 99, 118, 691
BseMII CTCAG 7 cut(s) 169, 417, 466, 564, 591, 617, 717
BseNI ACTGG 2 cut(s) 605, 701
BseXI GCAGC 2 cut(s) 170, 297
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 1 cut(s) 116
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 12, 177, 375
BsiSI CCGG 3 cut(s) 99, 190, 246
BslI CCNNNNNNNGG 3 cut(s) 99, 118, 691
BsmAI GTCTC 1 cut(s) 776
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 5 cut(s) 12, 29, 177, 317, 375
Bsp143I GATC 2 cut(s) 158, 448
Bsp19I CCATGG 2 cut(s) 117, 201
BspACI CCGC 3 cut(s) 93, 181, 456
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 7 cut(s) 168, 418, 465, 565, 592, 618, 718
BspLI GGNNCC 1 cut(s) 756
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 605, 701
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 5 cut(s) 22, 117, 201, 214, 376
BssMI GATC 2 cut(s) 158, 448
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 3 cut(s) 117, 201, 376
Bst2UI CCWGG 4 cut(s) 23, 65, 113, 436
Bst4CI ACNGT 5 cut(s) 295, 368, 472, 562, 673
Bst6I CTCTTC 3 cut(s) 694, 762, 774
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 29, 247
BstDEI CTNAG 7 cut(s) 155, 426, 452, 573, 600, 626, 726
BstDSI CCRYGG 2 cut(s) 117, 201
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 4 cut(s) 213, 420, 653, 778
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 161, 451
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 2 cut(s) 158, 448
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 143, 192, 431
BstNI CCWGG 4 cut(s) 23, 65, 113, 436
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 5 cut(s) 21, 63, 98, 111, 434
BstSFI CTRYAG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 170, 297
BstX2I RGATCY 2 cut(s) 158, 448
BstYI RGATCY 2 cut(s) 158, 448
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 2 cut(s) 117, 201
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 4 cut(s) 213, 420, 653, 778
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 373, 528
Cac8I GCNNGC 2 cut(s) 29, 247
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 19, 61
CseI GACGC 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 631, 715
CviAII CATG 6 cut(s) 118, 202, 223, 304, 401, 634
CviQI GTAC 2 cut(s) 631, 715
DdeI CTNAG 7 cut(s) 155, 426, 452, 573, 600, 626, 726
DpnI GATC 2 cut(s) 160, 450
DpnII GATC 2 cut(s) 158, 448
Eam1104I CTCTTC 3 cut(s) 694, 762, 774
EarI CTCTTC 3 cut(s) 694, 762, 774
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 117, 201, 376
Eco24I GRGCYC 3 cut(s) 12, 29, 317
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 19, 61
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 183
Eco81I CCTNAGG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 61
EcoO65I GGTNACC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 4 cut(s) 21, 63, 111, 434
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 117, 201, 376
EcoT38I GRGCYC 3 cut(s) 12, 29, 317
ErhI CCWWGG 3 cut(s) 117, 201, 376
FaeI CATG 6 cut(s) 121, 205, 226, 307, 404, 637
FaiI YATR 8 cut(s) 119, 203, 224, 305, 402, 590, 635, 740
FatI CATG 6 cut(s) 117, 201, 222, 303, 400, 633
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 184, 286, 457
FokI GGATG 4 cut(s) 220, 427, 640, 785
FriOI GRGCYC 3 cut(s) 12, 29, 317
Fsp4HI GCNGC 3 cut(s) 184, 286, 457
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 184, 286, 457
GsuI CTGGAG 3 cut(s) 68, 95, 109
HaeIII GGCC 1 cut(s) 116
HapII CCGG 3 cut(s) 99, 190, 246
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 6 cut(s) 121, 205, 226, 307, 404, 637
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 50, 122, 498
HpaII CCGG 3 cut(s) 99, 190, 246
HphI GGTGA 4 cut(s) 61, 256, 289, 476
Hpy166II GTNNAC 2 cut(s) 548, 565
Hpy188I TCNGA 6 cut(s) 14, 158, 163, 337, 627, 694
Hpy188III TCNNGA 3 cut(s) 37, 47, 386
Hpy8I GTNNAC 2 cut(s) 548, 565
Hpy99I CGWCG 4 cut(s) 77, 137, 146, 284
HpyAV CCTTC 6 cut(s) 34, 158, 310, 429, 488, 652
HpyCH4III ACNGT 5 cut(s) 295, 368, 472, 562, 673
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 192, 431
HpyF3I CTNAG 7 cut(s) 155, 426, 452, 573, 600, 626, 726
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 6 cut(s) 121, 205, 226, 307, 404, 637
HspAI GCGC 1 cut(s) 243
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 158, 448
LmnI GCTCC 5 cut(s) 7, 15, 95, 192, 760
Lsp1109I GCAGC 2 cut(s) 170, 297
LweI GCATC 4 cut(s) 204, 222, 405, 662
MabI ACCWGGT 1 cut(s) 63
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 5 cut(s) 67, 262, 295, 484, 673
MalI GATC 2 cut(s) 160, 450
MboI GATC 2 cut(s) 158, 448
MboII GAAGA 4 cut(s) 681, 779, 788, 791
MflI RGATCY 2 cut(s) 158, 448
MhlI GDGCHC 5 cut(s) 12, 29, 177, 317, 375
MluCI AATT 2 cut(s) 330, 381
MlyI GAGTC 3 cut(s) 59, 116, 507
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 641
MslI CAYNNNNRTG 4 cut(s) 200, 206, 302, 593
MspA1I CMGCKG 2 cut(s) 183, 456
MspI CCGG 3 cut(s) 99, 190, 246
MspR9I CCNGG 5 cut(s) 23, 65, 100, 113, 436
MvaI CCWGG 4 cut(s) 23, 65, 113, 436
MwoI GCNNNNNNNGC 3 cut(s) 143, 192, 431
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 2 cut(s) 117, 201
NdeII GATC 2 cut(s) 158, 448
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 6 cut(s) 121, 205, 226, 307, 404, 637
NlaIV GGNNCC 1 cut(s) 756
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 4 cut(s) 67, 262, 295, 484
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 138, 258, 285
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 641
PflFI GACNNNGTC 2 cut(s) 65, 260
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 3 cut(s) 185, 287, 458
PleI GAGTC 3 cut(s) 58, 116, 506
PpsI GAGTC 3 cut(s) 58, 116, 506
PpuMI RGGWCCY 1 cut(s) 61
PscI ACATGT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 4 cut(s) 21, 63, 111, 434
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 4 cut(s) 21, 63, 111, 434
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 2 cut(s) 19, 61
PspPPI RGGWCCY 1 cut(s) 61
PsuI RGATCY 2 cut(s) 158, 448
PsyI GACNNNGTC 2 cut(s) 65, 260
RsaI GTAC 2 cut(s) 632, 716
RsaNI GTAC 2 cut(s) 631, 715
RseI CAYNNNNRTG 4 cut(s) 200, 206, 302, 593
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 3 cut(s) 184, 286, 457
Sau3AI GATC 2 cut(s) 158, 448
Sau96I GGNCC 2 cut(s) 19, 61
SchI GAGTC 3 cut(s) 59, 116, 507
ScrFI CCNGG 5 cut(s) 23, 65, 100, 113, 436
SduI GDGCHC 5 cut(s) 12, 29, 177, 317, 375
SexAI ACCWGGT 1 cut(s) 63
SfaNI GCATC 4 cut(s) 204, 222, 405, 662
SfcI CTRYAG 1 cut(s) 544
SinI GGWCC 2 cut(s) 19, 61
SmiMI CAYNNNNRTG 4 cut(s) 200, 206, 302, 593
SmlI CTYRAG 4 cut(s) 35, 236, 269, 792
SmoI CTYRAG 4 cut(s) 35, 236, 269, 792
Sse9I AATT 2 cut(s) 330, 381
SsiI CCGC 3 cut(s) 93, 181, 456
SspI AATATT 1 cut(s) 538
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 5 cut(s) 21, 63, 98, 111, 434
StyI CCWWGG 3 cut(s) 117, 201, 376
TaaI ACNGT 5 cut(s) 295, 368, 472, 562, 673
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 84, 171, 363
TasI AATT 2 cut(s) 330, 381
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 459
TscAI CASTG 2 cut(s) 373, 535
TseFI GTSAC 4 cut(s) 67, 262, 295, 484
TseI GCWGC 2 cut(s) 183, 285
Tsp45I GTSAC 4 cut(s) 67, 262, 295, 484
TspDTI ATGAA 6 cut(s) 224, 292, 362, 600, 650, 789
TspRI CASTG 2 cut(s) 373, 535
Tth111I GACNNNGTC 2 cut(s) 65, 260
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 19, 61
XapI RAATTY 2 cut(s) 330, 381
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.