pycom11g07110

This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011395
Physical Location & Seq
Forward (+)
5388428 .. 5390072
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07110.4

Sequence Viewer

Length: 804 bp
ATGTTGGAGCTCCGACTGGTGCAGGGGTCGCTGCTGAAGAAGGTGCTGGAGTCCATCAAGGACCTGGTGAACGACGCCAACTTCGACTGCTCCTCCTCCGGCTTCTCCCTCCAGGCCATGGACTCCAGCCACGTGGCGCTCGTCGCCCTCCTCCTCAGATCCGAGGGCTTCGAGCACTACCGCTGCGACCGCAACATCTCCATGGGAATGAACCTCGGCAACATGTCCAAGATGCTCAAGTGCGCCGGAAATGATGACATCATCACCATCAAGGCCGACGATGGCAGTGACACGGTCACCTTCATGTTCGAAAGCCCCACACAAGATAAAATTTCTGATTTTGAGATGAAGCTGATGGATATTGATAGCGAGCACCTAGGAATTCCGGAGGCAGAATACCAGTCTATTGTGACGATGCCCTCAGCTGAGTTTGCTAGGATATGCAAGGACCTCAGTGGCATTGGTGACACAGTCGTGATATCGGTGACCAAGGAAGGTGTGAAGTTCTCCACAAGAGGGGATATAGGCACTGCTAACATTGTCTGTAGGCAGAACACTACAGTTGACAAGCCCGAAGAAGCAACGGTCATAAACATGAGCGAGCCAGTGTCGTTGACATTCGCTCTGAGGTACATGAACTCGTTCACAAAGGCAACCACATTGTCGAATACAGTCACAATCAGCTTGTCTTCTGAACTTCCAGTTGTGGTTGAGTACAAGATTGCAGAGATGGGCTATATTAGGTTCTACCTGGCTCCGAAGATAGAAGAAGACGATGAAGGCGAAACCAAGCCAGAAGTTTGA

Protein Analysis

268

Amino Acids

29.45

Weight (kDa)

4.57

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07370 AT2G29570
fragaria_vesca FvH4_3g37710 FvH4_6g24870
malus_domestica MD03G1078300.v1.1 MD11G1083000.v1.1 MD13G1227300.v1.1
prunus_persica Prupe.6G063300_v2.0.a1
pyrus_communis pycom03g06260 pycom11g07110
rosa_chinensis RchiOBHm_Chr5g0067981
rosa_laevigata RLG00000035949
rosa_multiflora Rmu_sc0000435.1_g000036
rosa_roxburghii Rroxscaffold_1G00012620 Rroxscaffold_1G00013330
rosa_rugosa Rorug05G0387000
rosa_samantha Rh5BG463400 Rh5CG485300 Rh5DG477400
rosa_wichuraiana Rw5G041640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 2 cut(s) 181, 190
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 330, 381
AcuI CTGAAG 1 cut(s) 56
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 632, 716
AfiI CCNNNNNNNGG 2 cut(s) 118, 516
AflIII ACRYGT 1 cut(s) 222
AjnI CCWGG 3 cut(s) 63, 111, 750
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 10, 352, 425, 684
AluI AGCT 4 cut(s) 10, 352, 425, 684
Alw21I GWGCWC 3 cut(s) 12, 177, 375
AlwI GGATC 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 2 cut(s) 114, 273
ApeKI GCWGC 2 cut(s) 31, 183
ApoI RAATTY 2 cut(s) 330, 381
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 641
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 2 cut(s) 139, 245
AspS9I GGNCC 2 cut(s) 61, 448
AsuHPI GGTGA 5 cut(s) 79, 256, 289, 476, 496
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 2 cut(s) 61, 448
AvrII CCTAGG 1 cut(s) 376
BanII GRGCYC 1 cut(s) 12
BbrPI CACGTG 1 cut(s) 133
BbsI GAAGAC 2 cut(s) 681, 777
Bbv12I GWGCWC 3 cut(s) 12, 177, 375
BbvCI CCTCAGC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 18, 170
BccI CCATC 5 cut(s) 62, 275, 275, 349, 724
BciT130I CCWGG 3 cut(s) 65, 113, 752
BfaI CTAG 2 cut(s) 377, 435
BfmI CTRYAG 2 cut(s) 544, 558
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 2 cut(s) 32, 184
BlnI CCTAGG 1 cut(s) 376
BlsI GCNGC 2 cut(s) 33, 185
Bme1390I CCNGG 3 cut(s) 65, 113, 752
Bme18I GGWCC 2 cut(s) 61, 448
BmgT120I GGNCC 2 cut(s) 61, 448
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 3 cut(s) 65, 113, 752
BmsI GCATC 2 cut(s) 222, 405
BpiI GAAGAC 2 cut(s) 681, 777
BpmI CTGGAG 3 cut(s) 68, 95, 109
Bpu10I CCTNAGC 1 cut(s) 421
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 6 cut(s) 117, 162, 201, 214, 376, 489
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 516
Bse1I ACTGG 4 cut(s) 21, 400, 605, 701
BseAI TCCGGA 1 cut(s) 385
BseBI CCWGG 3 cut(s) 65, 113, 752
BseDI CCNNGG 6 cut(s) 117, 162, 201, 214, 376, 489
BseLI CCNNNNNNNGG 2 cut(s) 118, 516
BseMII CTCAG 5 cut(s) 169, 417, 435, 466, 617
BseNI ACTGG 4 cut(s) 21, 400, 605, 701
BseRI GAGGAG 4 cut(s) 82, 85, 140, 143
BseXI GCAGC 2 cut(s) 18, 170
BsgI GTGCAG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 2 cut(s) 116, 275
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 12, 177, 375
BsiSI CCGG 3 cut(s) 99, 246, 386
BslI CCNNNNNNNGG 2 cut(s) 118, 516
BsnI GGCC 2 cut(s) 116, 275
Bsp119I TTCGAA 1 cut(s) 309
Bsp1286I GDGCHC 3 cut(s) 12, 177, 375
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 1 cut(s) 158
Bsp19I CCATGG 2 cut(s) 117, 201
BspACI CCGC 2 cut(s) 181, 190
BspANI GGCC 2 cut(s) 116, 275
BspCNI CTCAG 5 cut(s) 168, 418, 434, 465, 618
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 309
BsrI ACTGG 4 cut(s) 21, 400, 605, 701
BssECI CCNNGG 6 cut(s) 117, 162, 201, 214, 376, 489
BssMI GATC 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 4 cut(s) 117, 201, 376, 489
Bst2UI CCWGG 3 cut(s) 65, 113, 752
Bst4CI ACNGT 5 cut(s) 295, 472, 562, 586, 673
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 371, 602
BstDEI CTNAG 5 cut(s) 155, 421, 426, 452, 626
BstDSI CCRYGG 2 cut(s) 117, 201
BstEII GGTNACC 2 cut(s) 295, 484
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 139, 245
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 28, 143, 189, 431
BstNI CCWGG 3 cut(s) 65, 113, 752
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 2 cut(s) 295, 484
BstSCI CCNGG 3 cut(s) 63, 111, 750
BstSFI CTRYAG 2 cut(s) 544, 558
BstV1I GCAGC 2 cut(s) 18, 170
BstV2I GAAGAC 2 cut(s) 681, 777
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 2 cut(s) 116, 275
BtgI CCRYGG 2 cut(s) 117, 201
BtsI GCAGTG 2 cut(s) 292, 528
BtsIMutI CAGTG 4 cut(s) 292, 460, 528, 612
Cac8I GCNNGC 2 cut(s) 371, 602
CfoI GCGC 2 cut(s) 139, 245
Cfr13I GGNCC 2 cut(s) 61, 448
CseI GACGC 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 631, 715
CviAII CATG 6 cut(s) 118, 202, 223, 304, 595, 634
CviQI GTAC 2 cut(s) 631, 715
DdeI CTNAG 5 cut(s) 155, 421, 426, 452, 626
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 4 cut(s) 117, 201, 376, 489
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 61, 448
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 56
Eco72I CACGTG 1 cut(s) 133
Eco91I GGTNACC 2 cut(s) 295, 484
EcoICRI GAGCTC 1 cut(s) 10
EcoO109I RGGNCCY 2 cut(s) 61, 448
EcoO65I GGTNACC 2 cut(s) 295, 484
EcoRI GAATTC 1 cut(s) 381
EcoRII CCWGG 3 cut(s) 63, 111, 750
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 4 cut(s) 117, 201, 376, 489
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 4 cut(s) 117, 201, 376, 489
FaeI CATG 6 cut(s) 121, 205, 226, 307, 598, 637
FatI CATG 6 cut(s) 117, 201, 222, 303, 594, 633
Fnu4HI GCNGC 2 cut(s) 32, 184
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 32, 184
FspBI CTAG 2 cut(s) 377, 435
GlaI GCGC 2 cut(s) 138, 244
GluI GCNGC 2 cut(s) 32, 184
GsuI CTGGAG 3 cut(s) 68, 95, 109
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 116, 275
HapII CCGG 3 cut(s) 99, 246, 386
HgaI GACGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 139, 245
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 6 cut(s) 121, 205, 226, 307, 598, 637
Hin6I GCGC 2 cut(s) 137, 243
HinP1I GCGC 2 cut(s) 137, 243
HincII GTYRAC 2 cut(s) 565, 615
HindII GTYRAC 2 cut(s) 565, 615
HinfI GANTC 2 cut(s) 50, 122
HpaII CCGG 3 cut(s) 99, 246, 386
HphI GGTGA 5 cut(s) 79, 256, 289, 476, 496
Hpy166II GTNNAC 4 cut(s) 70, 565, 615, 645
Hpy188I TCNGA 7 cut(s) 14, 158, 163, 337, 627, 694, 759
Hpy188III TCNNGA 2 cut(s) 386, 475
Hpy8I GTNNAC 4 cut(s) 70, 565, 615, 645
Hpy99I CGWCG 3 cut(s) 77, 146, 281
HpyAV CCTTC 4 cut(s) 34, 310, 488, 773
HpyCH4III ACNGT 5 cut(s) 295, 472, 562, 586, 673
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 22, 444, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 143, 189, 431
HpyF3I CTNAG 5 cut(s) 155, 421, 426, 452, 626
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 6 cut(s) 121, 205, 226, 307, 598, 637
HspAI GCGC 2 cut(s) 137, 243
Kpn2I TCCGGA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 4 cut(s) 7, 15, 95, 760
Lsp1109I GCAGC 2 cut(s) 18, 170
LweI GCATC 2 cut(s) 222, 405
MabI ACCWGGT 1 cut(s) 63
MaeI CTAG 2 cut(s) 377, 435
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 6 cut(s) 287, 295, 409, 464, 484, 673
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 6 cut(s) 49, 587, 681, 772, 779, 782
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 3 cut(s) 12, 177, 375
MluCI AATT 2 cut(s) 330, 381
MlyI GAGTC 2 cut(s) 59, 116
MmeI TCCRAC 1 cut(s) 37
MroI TCCGGA 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 641
MslI CAYNNNNRTG 5 cut(s) 200, 206, 302, 473, 593
MspA1I CMGCKG 2 cut(s) 183, 425
MspI CCGG 3 cut(s) 99, 246, 386
MspR9I CCNGG 3 cut(s) 65, 113, 752
MvaI CCWGG 3 cut(s) 65, 113, 752
MwoI GCNNNNNNNGC 4 cut(s) 28, 143, 189, 431
NcoI CCATGG 2 cut(s) 117, 201
NdeII GATC 1 cut(s) 158
NlaIII CATG 6 cut(s) 121, 205, 226, 307, 598, 637
NlaIV GGNNCC 1 cut(s) 756
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 6 cut(s) 287, 295, 409, 464, 484, 673
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 309
OliI CACNNNNGTG 1 cut(s) 473
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 138, 780
PdmI GAANNNNTTC 1 cut(s) 641
PflFI GACNNNGTC 2 cut(s) 293, 470
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 2 cut(s) 33, 185
PleI GAGTC 2 cut(s) 58, 116
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 58, 116
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 2 cut(s) 61, 448
PscI ACATGT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 12
Psp5II RGGWCCY 2 cut(s) 61, 448
Psp6I CCWGG 3 cut(s) 63, 111, 750
PspCI CACGTG 1 cut(s) 133
PspEI GGTNACC 2 cut(s) 295, 484
PspGI CCWGG 3 cut(s) 63, 111, 750
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 2 cut(s) 61, 448
PspPPI RGGWCCY 2 cut(s) 61, 448
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 2 cut(s) 293, 470
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 632, 716
RsaNI GTAC 2 cut(s) 631, 715
RseI CAYNNNNRTG 5 cut(s) 200, 206, 302, 473, 593
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 2 cut(s) 32, 184
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 2 cut(s) 61, 448
SchI GAGTC 2 cut(s) 59, 116
ScrFI CCNGG 3 cut(s) 65, 113, 752
SduI GDGCHC 3 cut(s) 12, 177, 375
SexAI ACCWGGT 1 cut(s) 63
SfaNI GCATC 2 cut(s) 222, 405
SfcI CTRYAG 2 cut(s) 544, 558
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 2 cut(s) 61, 448
SmiMI CAYNNNNRTG 5 cut(s) 200, 206, 302, 473, 593
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 330, 381
SsiI CCGC 2 cut(s) 181, 190
SspMI CTAG 2 cut(s) 377, 435
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 63, 111, 750
StyI CCWWGG 4 cut(s) 117, 201, 376, 489
TaaI ACNGT 5 cut(s) 295, 472, 562, 586, 673
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 84, 171, 309, 665
TasI AATT 2 cut(s) 330, 381
TatI WGTACW 1 cut(s) 714
TscAI CASTG 4 cut(s) 292, 460, 535, 612
TseFI GTSAC 6 cut(s) 287, 295, 409, 464, 484, 673
TseI GCWGC 2 cut(s) 31, 183
Tsp45I GTSAC 6 cut(s) 287, 295, 409, 464, 484, 673
TspDTI ATGAA 5 cut(s) 224, 292, 362, 650, 792
TspRI CASTG 4 cut(s) 292, 460, 535, 612
Tth111I GACNNNGTC 2 cut(s) 293, 470
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 61, 448
XapI RAATTY 2 cut(s) 330, 381
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmaJI CCTAGG 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 2 cut(s) 377, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.