Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011395

Physical Location & Seq

Genomic Coordinates Reverse (-)

12649906 .. 12651753

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTGGAGCTTCGTTTAGTTCAAGGTTCTCTACTGAAGAAGGTTCTAGAAGCGGTCAAAGATCTGGTGAACGATGCGAACTTCGACTGTTCGACCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGCCATGTCGCGTTGGTGTCTCTTTTGCTTAGATCTGAAGGTTTCGAGCACTATAGATGCGATAGGAACCTCTCTATGGGAATGAATCTTGGTAATATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACCATCAAAGCTGATGATGGTAGCGACACTGTTACTTTCATGTTTGAGAGTCCCACACAAGACAAGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAGCATTTAGGAATTCCTGATGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTCAACAGCAGGTGATATCGGGACAGCAAACATTGTGCTCAGGCAGAATACTACCGTCGACAAACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGAGGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACCATCAGTTTGTCCTCTGAGTTACCGGTCGTGGTGGAGTACAAGGTGGCTGAGATGGGTTACATTCGATACTATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACCAAACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006272 GO:0006281 GO:0006298 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0018130 GO:0019438 GO:0019985 GO:0022616 GO:0030234 GO:0030337 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043626 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044796 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0098772 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 ko04110 ko04530 ko05161 ko05166 map03030 map03410 map03420 map03430 map04110 map04530 map05161 map05166

Pfam Domains

Protein Families

PCNA_C PCNA_N

Protein Analysis

264

Amino Acids

29.22

Weight (kDa)

4.61

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCNA_N	PF00705	1 - 125	8.9e-59	Proliferating cell nuclear antigen, N-terminal domain
Rad9	PF04139	13 - 216	1.1e-06	Rad9
PCNA_C	PF02747	127 - 254	3.4e-60	Proliferating cell nuclear antigen, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07370 AT2G29570
fragaria_vesca	FvH4_3g37710 FvH4_6g24870
malus_domestica	MD03G1078300.v1.1 MD11G1083000.v1.1 MD13G1227300.v1.1
prunus_persica	Prupe.6G063300_v2.0.a1
pyrus_communis	pycom03g06260 pycom11g07110
rosa_chinensis	RchiOBHm_Chr5g0067981
rosa_laevigata	RLG00000035949
rosa_multiflora	Rmu_sc0000435.1_g000036
rosa_roxburghii	Rroxscaffold_1G00012620 Rroxscaffold_1G00013330
rosa_rugosa	Rorug05G0387000
rosa_samantha	Rh5BG463400 Rh5CG485300 Rh5DG477400
rosa_wichuraiana	Rw5G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	381, 428
AcuI	CTGAAG	3 cut(s)	56, 183, 594
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	3 cut(s)	398, 632, 716
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	23, 113, 510, 767
AjnI	CCWGG	1 cut(s)	434
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	10, 116, 275, 352
AluI	AGCT	4 cut(s)	10, 116, 275, 352
Alw21I	GWGCWC	2 cut(s)	177, 546
Alw26I	GTCTC	1 cut(s)	150
ApoI	RAATTY	2 cut(s)	381, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AsiGI	ACCGGT	1 cut(s)	700
Asp700I	GAANNNNTTC	2 cut(s)	418, 641
AspLEI	GCGC	1 cut(s)	757
AsuHPI	GGTGA	6 cut(s)	79, 256, 437, 476, 511, 530
BanI	GGYRCC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	2 cut(s)	177, 546
BccI	CCATC	5 cut(s)	275, 275, 349, 686, 724
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	506
BglII	AGATCT	3 cut(s)	61, 158, 448
Bme1390I	CCNGG	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	194, 756
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	5 cut(s)	64, 173, 222, 379, 568
BpiI	GAAGAC	1 cut(s)	783
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
Bpu10I	CCTNAGC	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	755
BsaWI	WCCGGW	1 cut(s)	700
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	700
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	5 cut(s)	384, 466, 559, 684, 717
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	705
BshNI	GGYRCC	1 cut(s)	754
BshTI	ACCGGT	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	705
BsiHKAI	GWGCWC	2 cut(s)	177, 546
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	300, 541
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	300, 541
BsmI	GAATGC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	177, 546
Bsp143I	GATC	4 cut(s)	61, 158, 448, 477
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	5 cut(s)	385, 465, 558, 685, 718
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	194, 756
BspMI	ACCTGC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	754
BsrFI	RCCGGY	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	700
BssMI	GATC	4 cut(s)	61, 158, 448, 477
BssNI	GRCGYC	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	6 cut(s)	89, 295, 368, 472, 562, 673
BstACI	GRCGYC	1 cut(s)	755
BstDEI	CTNAG	8 cut(s)	155, 228, 393, 452, 545, 693, 726, 759
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	4 cut(s)	64, 161, 451, 480
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	61, 158, 448, 477
BstMCI	CGRYCG	1 cut(s)	705
BstMWI	GCNNNNNNNGC	1 cut(s)	610
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	3 cut(s)	61, 158, 448
BstYI	RGATCY	3 cut(s)	61, 158, 448
BtsIMutI	CAGTG	2 cut(s)	291, 373
BveI	ACCTGC	1 cut(s)	506
CfoI	GCGC	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	397, 631, 715
CspAI	ACCGGT	1 cut(s)	700
CviAII	CATG	3 cut(s)	131, 304, 634
CviJI	RGCY	8 cut(s)	10, 116, 129, 275, 352, 604, 653, 725
CviKI_1	RGCY	8 cut(s)	10, 116, 129, 275, 352, 604, 653, 725
CviQI	GTAC	3 cut(s)	397, 631, 715
DdeI	CTNAG	8 cut(s)	155, 228, 393, 452, 545, 693, 726, 759
DinI	GGCGCC	1 cut(s)	756
DpnI	GATC	4 cut(s)	63, 160, 450, 479
DpnII	GATC	4 cut(s)	61, 158, 448, 477
Eco32I	GATATC	3 cut(s)	259, 361, 523
Eco57I	CTGAAG	3 cut(s)	56, 183, 594
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	434
EcoRV	GATATC	3 cut(s)	259, 361, 523
EgeI	GGCGCC	1 cut(s)	756
EheI	GGCGCC	1 cut(s)	756
FaeI	CATG	3 cut(s)	134, 307, 637
FaiI	YATR	8 cut(s)	119, 132, 180, 203, 224, 305, 442, 635
FaqI	GGGAC	2 cut(s)	300, 541
FatI	CATG	3 cut(s)	130, 303, 633
FblI	GTMKAC	1 cut(s)	564
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	758
HapII	CCGG	1 cut(s)	701
HhaI	GCGC	1 cut(s)	757
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	3 cut(s)	134, 307, 637
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	122, 211, 313
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	6 cut(s)	79, 256, 437, 476, 511, 530
Hpy166II	GTNNAC	2 cut(s)	70, 565
Hpy188I	TCNGA	3 cut(s)	163, 667, 694
Hpy188III	TCNNGA	3 cut(s)	47, 386, 526
Hpy8I	GTNNAC	2 cut(s)	70, 565
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	5 cut(s)	34, 158, 429, 488, 652
HpyCH4III	ACNGT	6 cut(s)	89, 295, 368, 472, 562, 673
HpyCH4V	TGCA	3 cut(s)	335, 444, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	610
HpyF3I	CTNAG	8 cut(s)	155, 228, 393, 452, 545, 693, 726, 759
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	3 cut(s)	134, 307, 637
HspAI	GCGC	1 cut(s)	755
KasI	GGCGCC	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	61, 158, 448, 477
LmnI	GCTCC	1 cut(s)	7
LweI	GCATC	5 cut(s)	64, 173, 222, 379, 568
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	6 cut(s)	295, 464, 484, 673, 696, 734
MalI	GATC	4 cut(s)	63, 160, 450, 479
MboI	GATC	4 cut(s)	61, 158, 448, 477
MboII	GAAGA	6 cut(s)	49, 587, 779, 782, 785, 788
MflI	RGATCY	3 cut(s)	61, 158, 448
MhlI	GDGCHC	2 cut(s)	177, 546
MluCI	AATT	2 cut(s)	381, 428
Mly113I	GGCGCC	1 cut(s)	755
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	3 cut(s)	206, 621, 700
MroXI	GAANNNNTTC	2 cut(s)	418, 641
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	436
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	610
NarI	GGCGCC	1 cut(s)	755
NdeII	GATC	4 cut(s)	61, 158, 448, 477
NlaIII	CATG	3 cut(s)	134, 307, 637
NlaIV	GGNNCC	2 cut(s)	194, 756
NmuCI	GTSAC	2 cut(s)	464, 673
OliI	CACNNNNGTG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	418, 641
PfeI	GAWTC	2 cut(s)	122, 211
PfoI	TCCNGGA	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	700
PleI	GAGTC	1 cut(s)	321
PluTI	GGCGCC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	194, 756
PsuI	RGATCY	3 cut(s)	61, 158, 448
RsaI	GTAC	3 cut(s)	398, 632, 716
RsaNI	GTAC	3 cut(s)	397, 631, 715
RseI	CAYNNNNRTG	1 cut(s)	473
SalI	GTCGAC	1 cut(s)	563
Sau3AI	GATC	4 cut(s)	61, 158, 448, 477
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	2 cut(s)	177, 546
SfaNI	GCATC	5 cut(s)	64, 173, 222, 379, 568
SfcI	CTRYAG	1 cut(s)	178
SfoI	GGCGCC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	381, 428
SsiI	CCGC	1 cut(s)	53
SspDI	GGCGCC	1 cut(s)	754
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	6 cut(s)	89, 295, 368, 472, 562, 673
TaqI	TCGA	8 cut(s)	84, 92, 125, 171, 363, 404, 564, 742
TasI	AATT	2 cut(s)	381, 428
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	122, 211
TscAI	CASTG	2 cut(s)	298, 373
TseFI	GTSAC	2 cut(s)	464, 673
Tsp45I	GTSAC	2 cut(s)	464, 673
TspDTI	ATGAA	6 cut(s)	224, 292, 362, 606, 611, 650
TspRI	CASTG	2 cut(s)	298, 373
XapI	RAATTY	2 cut(s)	381, 428
XbaI	TCTAGA	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	2 cut(s)	418, 641
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.