Rorug05G0387000

This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011395
Physical Location & Seq
Reverse (-)
52564294 .. 52565104
811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0387000.1

Sequence Viewer

Length: 771 bp
ATGGACTATGCACGGAGCCTGTTCAATGCCATGCCTGAAAGAGATGTTTGGAACACCTTGATAAGGGGTTATGCTGATCGGGGACCTTGTCATGAAGCCATAGCTTTGTACAGAAAAATGCATCGAAGTGTTCGGTCTTGTGCGGTGCAGTCGGCTTTGAGAGAAGGGAAAGAAGTGCATTGTAACATAATTAAAAATGGGTTTAGTTCTGATGTATTTGTTCAGAGCTCCTTGGTGAGTATGTATGCACAGAACGGTGAAACTTTGAACTCAGAACTTGTTATTAACGAAATGGTTGAGAAGAACATAATTTCCTGGACTGAAATGATAGCAGGCTATGTGAAAAATGGGTTCTATAAAGAAGGGTTGAGTGTTTTGCACGACATGGTAGCTTCAGGTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCCTGCTTGTGCTACTTTGGAATTTTCGGATTTAGGAAAACTAATTCATTGTCATGGAGTTAAAGTTGGAGTTGGCTCAGAATTTGAAAAAGACTCTCTGACTCTAGATCTGGAACGCGCCTCACGCGCTTTCCCCAAAACCCATTTGCTGTTACTCAACTCCTCTCCCGATTGGCCGTCGATCTCGCCTTCCCTGAGCTATCTCCGGCTTCTTGAAGGCACTGGTGGCGACTCCGGCGTTTGTGTTCTCCGCCCTTCCACCGGGAAGCGGCGGAGCAAGAGATTTTCAGATGATGCAGCGGAAACGTACGAAGAATGGAGGCGATATTTCGTCTGA

Protein Analysis

256

Amino Acids

28.56

Weight (kDa)

6.66

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 149 1.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07370 AT2G29570
fragaria_vesca FvH4_3g37710 FvH4_6g24870
malus_domestica MD03G1078300.v1.1 MD11G1083000.v1.1 MD13G1227300.v1.1
prunus_persica Prupe.6G063300_v2.0.a1
pyrus_communis pycom03g06260 pycom11g07110
rosa_chinensis RchiOBHm_Chr5g0067981
rosa_laevigata RLG00000035949
rosa_multiflora Rmu_sc0000435.1_g000036
rosa_roxburghii Rroxscaffold_1G00012620 Rroxscaffold_1G00013330
rosa_rugosa Rorug05G0387000
rosa_samantha Rh5BG463400 Rh5CG485300 Rh5DG477400
rosa_wichuraiana Rw5G041640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 552, 561
AciI CCGC 5 cut(s) 143, 685, 703, 706, 734
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 2 cut(s) 455, 515
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 110, 743
AfiI CCNNNNNNNGG 3 cut(s) 63, 695, 702
AgsI TTSAA 4 cut(s) 25, 268, 521, 650
AjnI CCWGG 1 cut(s) 314
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 104, 228, 392, 633
AluI AGCT 4 cut(s) 104, 228, 392, 633
Alw21I GWGCWC 1 cut(s) 230
AoxI GGCC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 2 cut(s) 455, 515
AspLEI GCGC 2 cut(s) 554, 563
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 2 cut(s) 247, 269
AvaII GGWCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 1 cut(s) 316
BcnI CCSGG 1 cut(s) 697
BfaI CTAG 1 cut(s) 539
BglII AGATCT 1 cut(s) 541
BisI GCNGC 2 cut(s) 704, 732
BlsI GCNGC 2 cut(s) 705, 733
Bme1390I CCNGG 2 cut(s) 316, 697
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 3 cut(s) 17, 84, 400
BmrFI CCNGG 2 cut(s) 316, 697
BmsI GCATC 3 cut(s) 130, 438, 718
Bpu10I CCTNAGC 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 695, 702
Bse1I ACTGG 2 cut(s) 426, 661
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 63, 695, 702
BseMII CTCAG 3 cut(s) 285, 525, 620
BseNI ACTGG 2 cut(s) 426, 661
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 1 cut(s) 743
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 552, 561
BshFI GGCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 3 cut(s) 640, 669, 696
BsiWI CGTACG 1 cut(s) 741
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 63, 695, 702
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 76, 541, 615
BspACI CCGC 5 cut(s) 143, 685, 703, 706, 734
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 3 cut(s) 284, 524, 621
BspFNI CGCG 2 cut(s) 552, 561
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 17, 84, 400
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 426, 661
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 76, 541, 615
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 271, 511, 629
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 429
BstFNI CGCG 2 cut(s) 552, 561
BstHHI GCGC 2 cut(s) 554, 563
BstKTI GATC 3 cut(s) 79, 544, 618
BstMBI GATC 3 cut(s) 76, 541, 615
BstMWI GCNNNNNNNGC 4 cut(s) 558, 560, 660, 669
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 314, 695
BstUI CGCG 2 cut(s) 552, 561
BstV1I GCAGC 1 cut(s) 743
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuRI GGCC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 419, 654
Cac8I GCNNGC 1 cut(s) 334
CciI TCATGA 1 cut(s) 91
CfoI GCGC 2 cut(s) 554, 563
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 109, 742
CviAII CATG 4 cut(s) 31, 92, 385, 488
CviQI GTAC 2 cut(s) 109, 742
DdeI CTNAG 3 cut(s) 271, 511, 629
DpnI GATC 3 cut(s) 78, 543, 617
DpnII GATC 3 cut(s) 76, 541, 615
EaeI YGGCCR 1 cut(s) 608
EciI GGCGGA 2 cut(s) 674, 721
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 4 cut(s) 34, 95, 388, 491
FaqI GGGAC 1 cut(s) 96
FatI CATG 4 cut(s) 30, 91, 384, 487
Fnu4HI GCNGC 2 cut(s) 704, 732
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 704, 732
FspBI CTAG 1 cut(s) 539
GlaI GCGC 2 cut(s) 553, 562
GluI GCNGC 2 cut(s) 704, 732
HaeIII GGCC 1 cut(s) 610
HapII CCGG 3 cut(s) 640, 669, 696
HhaI GCGC 2 cut(s) 554, 563
Hin1II CATG 4 cut(s) 34, 95, 388, 491
Hin6I GCGC 2 cut(s) 552, 561
HinP1I GCGC 2 cut(s) 552, 561
HinfI GANTC 3 cut(s) 527, 535, 665
HpaII CCGG 3 cut(s) 640, 669, 696
HphI GGTGA 2 cut(s) 247, 269
Hpy188I TCNGA 8 cut(s) 211, 225, 274, 463, 514, 534, 724, 770
Hpy188III TCNNGA 5 cut(s) 92, 539, 545, 602, 647
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 5 cut(s) 158, 356, 633, 644, 699
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 7 cut(s) 11, 121, 148, 178, 248, 379, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 558, 560, 660, 669
HpyF3I CTNAG 3 cut(s) 271, 511, 629
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 4 cut(s) 34, 95, 388, 491
HspAI GCGC 2 cut(s) 552, 561
Kzo9I GATC 3 cut(s) 76, 541, 615
LmnI GCTCC 3 cut(s) 15, 233, 708
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 3 cut(s) 130, 438, 718
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 3 cut(s) 182, 415, 585
MalI GATC 3 cut(s) 78, 543, 617
MboI GATC 3 cut(s) 76, 541, 615
MboII GAAGA 2 cut(s) 313, 758
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 5 cut(s) 189, 309, 455, 477, 515
MlyI GAGTC 3 cut(s) 521, 529, 659
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 4 cut(s) 443, 565, 607, 747
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 3 cut(s) 192, 285, 495
MslI CAYNNNNRTG 2 cut(s) 126, 486
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 3 cut(s) 640, 669, 696
MspR9I CCNGG 2 cut(s) 316, 697
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 2 cut(s) 552, 561
MwoI GCNNNNNNNGC 4 cut(s) 558, 560, 660, 669
NciI CCSGG 1 cut(s) 697
NdeII GATC 3 cut(s) 76, 541, 615
NlaIII CATG 4 cut(s) 34, 95, 388, 491
NlaIV GGNNCC 3 cut(s) 17, 84, 400
NsiI ATGCAT 1 cut(s) 123
PagI TCATGA 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 741
PflFI GACNNNGTC 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 314
PkrI GCNGC 2 cut(s) 705, 733
PleI GAGTC 3 cut(s) 521, 529, 659
PpsI GAGTC 3 cut(s) 521, 529, 659
PpuMI RGGWCCY 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspLI CGTACG 1 cut(s) 741
PspN4I GGNNCC 3 cut(s) 17, 84, 400
PspPI GGNCC 1 cut(s) 83
PspPPI RGGWCCY 1 cut(s) 83
PsuI RGATCY 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 87
RsaI GTAC 2 cut(s) 110, 743
RsaNI GTAC 2 cut(s) 109, 742
RseI CAYNNNNRTG 2 cut(s) 126, 486
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 192, 285, 495
SatI GCNGC 2 cut(s) 704, 732
Sau3AI GATC 3 cut(s) 76, 541, 615
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 3 cut(s) 521, 529, 659
ScrFI CCNGG 2 cut(s) 316, 697
SduI GDGCHC 1 cut(s) 230
SetI ASST 8 cut(s) 59, 88, 106, 230, 394, 400, 635, 743
SfaNI GCATC 3 cut(s) 130, 438, 718
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 126, 486
Sse9I AATT 5 cut(s) 189, 309, 455, 477, 515
SsiI CCGC 5 cut(s) 143, 685, 703, 706, 734
SspMI CTAG 1 cut(s) 539
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 314, 695
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 743
TaqI TCGA 2 cut(s) 124, 614
TaqII GACCGA 1 cut(s) 123
TasI AATT 5 cut(s) 189, 309, 455, 477, 515
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 706
Tru1I TTAA 3 cut(s) 192, 285, 495
Tru9I TTAA 3 cut(s) 192, 285, 495
TscAI CASTG 2 cut(s) 426, 661
TseI GCWGC 1 cut(s) 731
TspDTI ATGAA 2 cut(s) 108, 470
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 426, 661
Tth111I GACNNNGTC 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 2 cut(s) 455, 515
XbaI TCTAGA 1 cut(s) 538
XspI CTAG 1 cut(s) 539
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.