AT1G07480

Transcription initiation factor IIA large subunit-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2296023 .. 2299544
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07480.3

Sequence Viewer

Length: 1128 bp
ATGGGTACAACAACGACAACAAGCGCTGTGTATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCATTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAAGCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGTGGTCCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACGAGACTCCCACTGCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCCGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATTATCCCACTCCTGGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTTATATGCCACCGCCTTCTCCGTGGACAAATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTGTGCCATCCTCTGGGAAACGAAAACGTGATGATTCTTCTGGACATTATCAAAATGGTGGATCTATACCTCAACAGGATGGTGCAGGCGATGCTATCCCTGAGGCAAACTTTGAGTGTGATGCATTCCGCATAACCTCTATTGGCGATAGAAAGGTACCACGAGACTTCTTCAGCTCATCATCGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACACCAAATATATATAGTTATCAAGGACCCAGTGAAGAGTTTAACGAGGCCAGAACTCCTGCTCCAAACGAGATCCAAACGAGCACTCCTGTTGCTGTACAAAACGATATCATTGAAGATGATGAAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAGCAGGCGAGTTTGACTTCTGA

Protein Analysis

375

Amino Acids

41.29

Weight (kDa)

4.25

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIA PF03153 10 - 129 1.2e-13 Transcription factor IIA, alpha/beta subunit
TFIIA PF03153 240 - 368 6.6e-26 Transcription factor IIA, alpha/beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1029
Acc36I ACCTGC 1 cut(s) 1029
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 1 cut(s) 712
AccB7I CCANNNNNTGG 2 cut(s) 203, 569
AccII CGCG 1 cut(s) 1027
AciI CCGC 3 cut(s) 320, 449, 685
AclWI GGATC 3 cut(s) 625, 862, 1073
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 712
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 6 cut(s) 7, 247, 257, 331, 714, 894
AfeI AGCGCT 1 cut(s) 25
AfiI CCNNNNNNNGG 6 cut(s) 203, 242, 326, 389, 521, 569
AgsI TTSAA 6 cut(s) 122, 163, 229, 911, 931, 1099
AhdI GACNNNNNGTC 1 cut(s) 479
AjnI CCWGG 4 cut(s) 94, 202, 388, 996
AloI GAACNNNNNNTCC 2 cut(s) 841, 873
AluBI AGCT 4 cut(s) 118, 732, 925, 1007
AluI AGCT 4 cut(s) 118, 732, 925, 1007
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 3 cut(s) 128, 254, 714
AlwI GGATC 3 cut(s) 625, 862, 1073
Aor51HI AGCGCT 1 cut(s) 25
AoxI GGCC 3 cut(s) 502, 761, 843
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
Asp718I GGTACC 1 cut(s) 712
AspLEI GCGC 2 cut(s) 26, 1029
AspS9I GGNCC 5 cut(s) 92, 167, 209, 761, 821
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 1033
AvaII GGWCC 4 cut(s) 92, 167, 209, 821
AxyI CCTNAGG 2 cut(s) 657, 750
BanI GGYRCC 1 cut(s) 712
BauI CACGAG 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 1 cut(s) 1118
BccI CCATC 4 cut(s) 494, 571, 629, 752
BceAI ACGGC 1 cut(s) 489
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 4 cut(s) 96, 204, 390, 998
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 3 cut(s) 128, 254, 714
BfaI CTAG 3 cut(s) 432, 471, 965
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 1029
BisI GCNGC 2 cut(s) 320, 1107
BlsI GCNGC 2 cut(s) 321, 1108
Bme1390I CCNGG 5 cut(s) 96, 204, 327, 390, 998
Bme18I GGWCC 4 cut(s) 92, 167, 209, 821
BmeRI GACNNNNNGTC 1 cut(s) 479
BmgT120I GGNCC 5 cut(s) 92, 167, 209, 761, 821
BmiI GGNNCC 2 cut(s) 714, 823
BmrFI CCNGG 5 cut(s) 96, 204, 327, 390, 998
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 3 cut(s) 135, 637, 667
BmuI ACTGGG 1 cut(s) 819
BpuEI CTTGAG 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 458
BsaXI ACNNNNNCTCC 4 cut(s) 841, 865, 871, 895
Bsc4I CCNNNNNNNGG 6 cut(s) 203, 242, 326, 389, 521, 569
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 825
Bse21I CCTNAGG 2 cut(s) 657, 750
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 4 cut(s) 96, 204, 390, 998
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 6 cut(s) 55, 344, 357, 505, 563, 640
BseLI CCNNNNNNNGG 6 cut(s) 203, 242, 326, 389, 521, 569
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 6 cut(s) 124, 203, 387, 507, 648, 764
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 2 cut(s) 86, 266
BseXI GCAGC 1 cut(s) 1118
BsgI GTGCAG 2 cut(s) 660, 1069
Bsh1236I CGCG 1 cut(s) 1027
BshFI GGCC 3 cut(s) 504, 763, 845
BshNI GGYRCC 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 881
BsiSI CCGG 3 cut(s) 153, 327, 366
BslI CCNNNNNNNGG 6 cut(s) 203, 242, 326, 389, 521, 569
BsmAI GTCTC 3 cut(s) 128, 254, 714
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 3 cut(s) 504, 763, 845
Bsp1286I GDGCHC 1 cut(s) 881
Bsp1407I TGTACA 1 cut(s) 892
Bsp143I GATC 3 cut(s) 617, 867, 1065
BspACI CCGC 3 cut(s) 320, 449, 685
BspANI GGCC 3 cut(s) 504, 763, 845
BspCNI CTCAG 6 cut(s) 123, 202, 388, 508, 649, 763
BspFNI CGCG 1 cut(s) 1027
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 714, 823
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 3 cut(s) 625, 862, 1073
BspQI GCTCTTC 2 cut(s) 287, 915
BspT107I GGYRCC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 365
BsrGI TGTACA 1 cut(s) 892
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 3 cut(s) 617, 867, 1065
BssSI CACGAG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 4 cut(s) 96, 204, 390, 998
Bst6I CTCTTC 4 cut(s) 287, 825, 915, 1100
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 892
BstC8I GCNNGC 4 cut(s) 116, 150, 643, 1111
BstDEI CTNAG 6 cut(s) 110, 189, 396, 516, 657, 750
BstDSI CCRYGG 1 cut(s) 458
BstENI CCTNNNNNAGG 2 cut(s) 240, 519
BstF5I GGATG 6 cut(s) 55, 344, 357, 505, 563, 640
BstFNI CGCG 1 cut(s) 1027
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 1029
BstKTI GATC 3 cut(s) 620, 870, 1068
BstMAI GTCTC 3 cut(s) 128, 254, 714
BstMBI GATC 3 cut(s) 617, 867, 1065
BstMWI GCNNNNNNNGC 3 cut(s) 544, 647, 1035
BstNI CCWGG 4 cut(s) 96, 204, 390, 998
BstSCI CCNGG 5 cut(s) 94, 202, 325, 388, 996
BstUI CGCG 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 1118
BstX2I RGATCY 2 cut(s) 617, 867
BstYI RGATCY 2 cut(s) 617, 867
Bsu36I CCTNAGG 2 cut(s) 657, 750
BsuRI GGCC 3 cut(s) 504, 763, 845
BtgI CCRYGG 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 6 cut(s) 55, 344, 357, 505, 563, 640
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 212, 267, 832
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 4 cut(s) 116, 150, 643, 1111
CciI TCATGA 1 cut(s) 220
CfoI GCGC 2 cut(s) 26, 1029
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 5 cut(s) 92, 167, 209, 761, 821
CseI GACGC 1 cut(s) 1033
CsiI ACCWGGT 2 cut(s) 202, 996
Csp6I GTAC 6 cut(s) 6, 246, 256, 330, 713, 893
CviAII CATG 4 cut(s) 38, 221, 349, 1069
CviQI GTAC 6 cut(s) 6, 246, 256, 330, 713, 893
DdeI CTNAG 6 cut(s) 110, 189, 396, 516, 657, 750
DpnI GATC 3 cut(s) 619, 869, 1067
DpnII GATC 3 cut(s) 617, 867, 1065
DraIII CACNNNGTG 1 cut(s) 206
DriI GACNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 4 cut(s) 287, 825, 915, 1100
Eam1105I GACNNNNNGTC 1 cut(s) 479
EarI CTCTTC 4 cut(s) 287, 825, 915, 1100
Eco32I GATATC 1 cut(s) 904
Eco47I GGWCC 4 cut(s) 92, 167, 209, 821
Eco47III AGCGCT 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 712
Eco81I CCTNAGG 2 cut(s) 657, 750
EcoNI CCTNNNNNAGG 2 cut(s) 240, 519
EcoO109I RGGNCCY 2 cut(s) 92, 821
EcoRII CCWGG 4 cut(s) 94, 202, 388, 996
EcoRV GATATC 1 cut(s) 904
EcoT22I ATGCAT 2 cut(s) 682, 1074
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 4 cut(s) 41, 224, 352, 1072
FatI CATG 4 cut(s) 37, 220, 348, 1068
Fnu4HI GCNGC 2 cut(s) 320, 1107
FokI GGATG 6 cut(s) 62, 331, 344, 512, 550, 647
Fsp4HI GCNGC 2 cut(s) 320, 1107
FspBI CTAG 3 cut(s) 432, 471, 965
GlaI GCGC 2 cut(s) 25, 1028
GluI GCNGC 2 cut(s) 320, 1107
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 3 cut(s) 504, 763, 845
HapII CCGG 3 cut(s) 153, 327, 366
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 2 cut(s) 26, 1029
Hin1II CATG 4 cut(s) 41, 224, 352, 1072
Hin6I GCGC 2 cut(s) 24, 1027
HinP1I GCGC 2 cut(s) 24, 1027
HincII GTYRAC 2 cut(s) 58, 409
HindII GTYRAC 2 cut(s) 58, 409
HinfI GANTC 7 cut(s) 156, 217, 262, 304, 405, 590, 745
HpaII CCGG 3 cut(s) 153, 327, 366
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 5 cut(s) 58, 212, 409, 462, 543
Hpy188I TCNGA 3 cut(s) 192, 1056, 1127
Hpy188III TCNNGA 4 cut(s) 68, 160, 221, 597
Hpy8I GTNNAC 5 cut(s) 58, 212, 409, 462, 543
HpyAV CCTTC 3 cut(s) 236, 320, 462
HpyCH4IV ACGT 1 cut(s) 583
HpyCH4V TGCA 6 cut(s) 148, 301, 641, 680, 1050, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 544, 647, 1035
HpyF3I CTNAG 6 cut(s) 110, 189, 396, 516, 657, 750
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 4 cut(s) 41, 224, 352, 1072
HspAI GCGC 2 cut(s) 24, 1027
KpnI GGTACC 1 cut(s) 716
Kzo9I GATC 3 cut(s) 617, 867, 1065
LguI GCTCTTC 2 cut(s) 287, 915
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 1 cut(s) 1118
LweI GCATC 3 cut(s) 135, 637, 667
MabI ACCWGGT 2 cut(s) 202, 996
MaeI CTAG 3 cut(s) 432, 471, 965
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 1 cut(s) 1021
MalI GATC 3 cut(s) 619, 869, 1067
MboI GATC 3 cut(s) 617, 867, 1065
MflI RGATCY 2 cut(s) 617, 867
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 2 cut(s) 126, 1010
MlyI GAGTC 5 cut(s) 165, 211, 256, 298, 414
MmeI TCCRAC 2 cut(s) 338, 936
Mph1103I ATGCAT 2 cut(s) 682, 1074
MseI TTAA 3 cut(s) 81, 420, 837
MspI CCGG 3 cut(s) 153, 327, 366
MspR9I CCNGG 5 cut(s) 96, 204, 327, 390, 998
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 4 cut(s) 96, 204, 390, 998
MvnI CGCG 1 cut(s) 1027
MwoI GCNNNNNNNGC 3 cut(s) 544, 647, 1035
NciI CCSGG 1 cut(s) 327
NdeII GATC 3 cut(s) 617, 867, 1065
NlaIII CATG 4 cut(s) 41, 224, 352, 1072
NlaIV GGNNCC 2 cut(s) 714, 823
NmuCI GTSAC 1 cut(s) 1021
NsiI ATGCAT 2 cut(s) 682, 1074
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 1029
PciSI GCTCTTC 2 cut(s) 287, 915
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 957
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 590, 745
PflFI GACNNNGTC 1 cut(s) 432
PflMI CCANNNNNTGG 2 cut(s) 203, 569
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 2 cut(s) 321, 1108
PleI GAGTC 5 cut(s) 164, 211, 256, 298, 413
PpsI GAGTC 5 cut(s) 164, 211, 256, 298, 413
PpuMI RGGWCCY 2 cut(s) 92, 821
Psp5II RGGWCCY 2 cut(s) 92, 821
Psp6I CCWGG 4 cut(s) 94, 202, 388, 996
PspGI CCWGG 4 cut(s) 94, 202, 388, 996
PspN4I GGNNCC 2 cut(s) 714, 823
PspPI GGNCC 5 cut(s) 92, 167, 209, 761, 821
PspPPI RGGWCCY 2 cut(s) 92, 821
PsuI RGATCY 2 cut(s) 617, 867
PsyI GACNNNGTC 1 cut(s) 432
RsaI GTAC 6 cut(s) 7, 247, 257, 331, 714, 894
RsaNI GTAC 6 cut(s) 6, 246, 256, 330, 713, 893
SapI GCTCTTC 2 cut(s) 287, 915
SaqAI TTAA 3 cut(s) 81, 420, 837
SatI GCNGC 2 cut(s) 320, 1107
Sau3AI GATC 3 cut(s) 617, 867, 1065
Sau96I GGNCC 5 cut(s) 92, 167, 209, 761, 821
SchI GAGTC 5 cut(s) 165, 211, 256, 298, 414
ScrFI CCNGG 5 cut(s) 96, 204, 327, 390, 998
SduI GDGCHC 1 cut(s) 881
SexAI ACCWGGT 2 cut(s) 202, 996
SfaNI GCATC 3 cut(s) 135, 637, 667
SinI GGWCC 4 cut(s) 92, 167, 209, 821
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 126, 1010
SsiI CCGC 3 cut(s) 320, 449, 685
SspMI CTAG 3 cut(s) 432, 471, 965
StyD4I CCNGG 5 cut(s) 94, 202, 325, 388, 996
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 45, 740
TasI AATT 2 cut(s) 126, 1010
TatI WGTACW 1 cut(s) 892
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 2 cut(s) 590, 745
Tru1I TTAA 3 cut(s) 81, 420, 837
Tru9I TTAA 3 cut(s) 81, 420, 837
TscAI CASTG 3 cut(s) 219, 274, 832
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 5 cut(s) 67, 255, 798, 933, 998
TspGWI ACGGA 2 cut(s) 102, 447
TspRI CASTG 3 cut(s) 219, 274, 832
Tth111I GACNNNGTC 1 cut(s) 432
Van91I CCANNNNNTGG 2 cut(s) 203, 569
VpaK11BI GGWCC 4 cut(s) 92, 167, 209, 821
XagI CCTNNNNNAGG 2 cut(s) 240, 519
XapI RAATTY 1 cut(s) 126
XspI CTAG 3 cut(s) 432, 471, 965
Zsp2I ATGCAT 2 cut(s) 682, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.