RLG00000035853

Transcription initiation factor IIA large

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
72601061 .. 72605037
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035853

Sequence Viewer

Length: 1158 bp
ATGGCGAGTACGAGCGCTGTCTACATCAGTGTCATCGAGGACGTCATCAACAAGGTCAAAGAAGAGTTTGTCAATGGCGCCGGAGAAGACGTTCTCAAGGAGCTTCAAGGAACTTGGGAGGCGAAGATGATGCAAGCTGGTGTTGTAAATGCTCCGATTGAGAGGTCTGCGGCGGCAAAGCCCACACCTGGAGTTACTCCAGTTCATGATCTCAACGTACCGTATGAGGGGACTGAGGAGTATGAAACTCCTACTGCTGATTTACTCTTCCCTCCAACCCCGTTACAAACTCCAATGCCACAAACTCCTATTCCAACTCCCATCCCACAAACTCCAATTCAAACACCAGGAACTGCAGAGAATTATAATATTCCTACTGGAGCTAGTGACGATTCTGGTGGCGGCAACGCAGGTGGAAATACAGAGTTGAAACCGGGACGACCTAGCCCATACATGCAACCTCCTTCTCCTTGGATGACTCAGCGGCCCCCACTTGATGTTAATATTGCTTACGTGGAAGGGCGGGATGAGGTGGACAGAGGAACCTCTCATCAACCCCCGACACAGGACTTTTTCACAATGTCTGCTGGAAAGCGAAAACGTGAAGAAATCCCCCCACAATATCAAGCTGGTGGGTTTATACCCCAGCAAGATGGAGCGGGAGATGCTATACCTGAACTTTTTGAGATTGAGATTTGTGGAGGGAGCACTTCTATTGGTGGTGGTGGACATGCGTATGGTAAGATGTCTGCTTGTGCACCCAAGATTCCTCAACTCGATGGGCCCATCCCTGATCCCTATGAAGAGCTTTCTACTCCCAATATATACAATTATCAAGGAGTTTTCAATGAAGACTACAACATTGCCAACACACCAGCTCCCAATGATGTACCAGTCAGCACTCCAGCTCCTGTTGTTCAGAATGATGTTGGAGATGATGATGAGGACGATGAGCCCCCATTGAATGAAAATGACGATGATGATCTGGATGATGTGGACCAAGGAGAGGAACTGAACACACAGCATTTGGTATTGGCTCAGTTTGACAAGGTGACACGCACCAAGAGCAGGTGGAAGTGCACACTGAAGGATGGCATTATGCACATAAACAACAAGGATGTCCTTTTTAATAAGGCGACGGGAGAATTCGACTTCTGA

Protein Analysis

386

Amino Acids

41.68

Weight (kDa)

4.21

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIA PF03153 7 - 139 2.8e-15 Transcription factor IIA, alpha/beta subunit
TFIIA PF03153 252 - 384 8.3e-31 Transcription factor IIA, alpha/beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AarI CACCTGC 2 cut(s) 401, 1059
AatII GACGTC 1 cut(s) 45
Acc36I ACCTGC 2 cut(s) 401, 1059
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 659
AccI GTMKAC 1 cut(s) 21
AciI CCGC 6 cut(s) 170, 173, 402, 484, 523, 659
AclWI GGATC 1 cut(s) 788
AcsI RAATTY 1 cut(s) 1145
AcuI CTGAAG 1 cut(s) 1106
AcyI GRCGYC 2 cut(s) 42, 78
AfaI GTAC 3 cut(s) 10, 219, 891
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 5 cut(s) 188, 227, 565, 1006, 1068
AgsI TTSAA 5 cut(s) 107, 341, 430, 847, 964
AjnI CCWGG 2 cut(s) 187, 346
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 7 cut(s) 103, 137, 383, 629, 808, 878, 908
AluI AGCT 7 cut(s) 103, 137, 383, 629, 808, 878, 908
Alw21I GWGCWC 3 cut(s) 710, 760, 1082
Alw44I GTGCAC 2 cut(s) 756, 1078
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 2 cut(s) 353, 911
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 2 cut(s) 485, 782
ApaI GGGCCC 1 cut(s) 786
ApaLI GTGCAC 2 cut(s) 756, 1078
ApoI RAATTY 1 cut(s) 1145
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 2 cut(s) 17, 80
AspS9I GGNCC 4 cut(s) 486, 782, 783, 997
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 1063
AvaII GGWCC 1 cut(s) 997
BaeGI GKGCMC 3 cut(s) 760, 786, 1082
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 2 cut(s) 786, 957
BbsI GAAGAC 2 cut(s) 93, 858
Bbv12I GWGCWC 3 cut(s) 710, 760, 1082
BccI CCATC 5 cut(s) 329, 647, 773, 794, 1085
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 189, 348
BcnI CCSGG 1 cut(s) 435
BfaI CTAG 2 cut(s) 384, 444
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 2 cut(s) 18, 81
BfuAI ACCTGC 2 cut(s) 401, 1059
BisI GCNGC 4 cut(s) 171, 174, 403, 485
BlsI GCNGC 4 cut(s) 172, 175, 404, 486
Bme1390I CCNGG 3 cut(s) 189, 348, 435
Bme18I GGWCC 1 cut(s) 997
BmgT120I GGNCC 4 cut(s) 486, 782, 783, 997
BmiI GGNNCC 4 cut(s) 79, 488, 544, 784
BmrFI CCNGG 3 cut(s) 189, 348, 435
BmsI GCATC 2 cut(s) 120, 655
BpiI GAAGAC 2 cut(s) 93, 858
BpmI CTGGAG 4 cut(s) 183, 210, 399, 888
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 981
BsaHI GRCGYC 2 cut(s) 42, 78
BsaJI CCNNGG 2 cut(s) 470, 1000
BsaXI ACNNNNNCTCC 6 cut(s) 75, 105, 862, 892, 892, 922
Bsc4I CCNNNNNNNGG 5 cut(s) 188, 227, 565, 1006, 1068
Bse1I ACTGG 3 cut(s) 200, 382, 893
Bse3DI GCAATG 1 cut(s) 861
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 2 cut(s) 189, 348
BseDI CCNNGG 2 cut(s) 470, 1000
BseGI GGATG 7 cut(s) 321, 480, 532, 786, 994, 1096, 1123
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 5 cut(s) 188, 227, 565, 1006, 1068
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 3 cut(s) 225, 494, 1052
BseNI ACTGG 3 cut(s) 200, 382, 893
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 3 cut(s) 760, 786, 1082
BseYI CCCAGC 1 cut(s) 645
BshFI GGCC 2 cut(s) 487, 784
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 3 cut(s) 710, 760, 1082
BsiSI CCGG 2 cut(s) 81, 434
BslFI GGGAC 2 cut(s) 244, 450
BslI CCNNNNNNNGG 5 cut(s) 188, 227, 565, 1006, 1068
BsmFI GGGAC 2 cut(s) 244, 450
BsnI GGCC 2 cut(s) 487, 784
Bsp120I GGGCCC 1 cut(s) 782
Bsp1286I GDGCHC 5 cut(s) 710, 760, 786, 957, 1082
Bsp143I GATC 3 cut(s) 208, 793, 982
BspACI CCGC 6 cut(s) 170, 173, 402, 484, 523, 659
BspANI GGCC 2 cut(s) 487, 784
BspCNI CTCAG 3 cut(s) 226, 493, 1051
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 79, 488, 544, 784
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 2 cut(s) 401, 1059
BspPI GGATC 1 cut(s) 788
BspQI GCTCTTC 1 cut(s) 798
BspT107I GGYRCC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 861
BsrI ACTGG 3 cut(s) 200, 382, 893
BssECI CCNNGG 2 cut(s) 470, 1000
BssMI GATC 3 cut(s) 208, 793, 982
BssNI GRCGYC 2 cut(s) 42, 78
BssT1I CCWWGG 2 cut(s) 470, 1000
Bst2UI CCWGG 2 cut(s) 189, 348
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 3 cut(s) 57, 272, 798
BstACI GRCGYC 2 cut(s) 42, 78
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 234, 480, 1038
BstF5I GGATG 7 cut(s) 321, 480, 532, 786, 994, 1096, 1123
BstH2I RGCGCY 2 cut(s) 18, 81
BstHHI GCGC 2 cut(s) 17, 80
BstKTI GATC 3 cut(s) 211, 796, 985
BstMBI GATC 3 cut(s) 208, 793, 982
BstMWI GCNNNNNNNGC 2 cut(s) 665, 1065
BstNI CCWGG 2 cut(s) 189, 348
BstNSI RCATGY 2 cut(s) 457, 734
BstSCI CCNGG 3 cut(s) 187, 346, 433
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 3 cut(s) 760, 786, 1082
BstV2I GAAGAC 2 cut(s) 93, 858
BstXI CCANNNNNNTGG 1 cut(s) 653
BsuRI GGCC 2 cut(s) 487, 784
BtsCI GGATG 7 cut(s) 321, 480, 532, 786, 994, 1096, 1123
BtsIMutI CAGTG 2 cut(s) 34, 1082
BveI ACCTGC 2 cut(s) 401, 1059
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 2 cut(s) 353, 911
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 17, 80
Cfr13I GGNCC 4 cut(s) 486, 782, 783, 997
Csp6I GTAC 3 cut(s) 9, 218, 890
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 3 cut(s) 206, 454, 731
CviQI GTAC 3 cut(s) 9, 218, 890
DdeI CTNAG 3 cut(s) 234, 480, 1038
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 210, 795, 984
DpnII GATC 3 cut(s) 208, 793, 982
Eam1104I CTCTTC 3 cut(s) 57, 272, 798
EarI CTCTTC 3 cut(s) 57, 272, 798
Eco130I CCWWGG 2 cut(s) 470, 1000
Eco24I GRGCYC 2 cut(s) 786, 957
Eco47I GGWCC 1 cut(s) 997
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 2 cut(s) 187, 346
EcoT14I CCWWGG 2 cut(s) 470, 1000
EcoT38I GRGCYC 2 cut(s) 786, 957
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 470, 1000
FaeI CATG 3 cut(s) 209, 457, 734
FaqI GGGAC 2 cut(s) 244, 450
FatI CATG 3 cut(s) 205, 453, 730
FauI CCCGC 2 cut(s) 516, 652
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 171, 174, 403, 485
FokI GGATG 7 cut(s) 308, 487, 539, 773, 1001, 1103, 1130
FriOI GRGCYC 2 cut(s) 786, 957
Fsp4HI GCNGC 4 cut(s) 171, 174, 403, 485
FspBI CTAG 2 cut(s) 384, 444
GlaI GCGC 2 cut(s) 16, 79
GluI GCNGC 4 cut(s) 171, 174, 403, 485
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 4 cut(s) 183, 210, 399, 888
HaeII RGCGCY 2 cut(s) 18, 81
HaeIII GGCC 2 cut(s) 487, 784
HapII CCGG 2 cut(s) 81, 434
HhaI GCGC 2 cut(s) 17, 80
Hin1I GRCGYC 2 cut(s) 42, 78
Hin1II CATG 3 cut(s) 209, 457, 734
Hin6I GCGC 2 cut(s) 15, 78
HinP1I GCGC 2 cut(s) 15, 78
HinfI GANTC 3 cut(s) 392, 478, 766
HpaII CCGG 2 cut(s) 81, 434
HphI GGTGA 1 cut(s) 1063
Hpy166II GTNNAC 6 cut(s) 22, 535, 728, 758, 997, 1080
Hpy188I TCNGA 3 cut(s) 156, 921, 1157
Hpy188III TCNNGA 2 cut(s) 206, 986
Hpy8I GTNNAC 6 cut(s) 22, 535, 728, 758, 997, 1080
Hpy99I CGWCG 1 cut(s) 1141
HpyAV CCTTC 3 cut(s) 474, 512, 1081
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 5 cut(s) 42, 90, 216, 513, 601
HpyCH4V TGCA 6 cut(s) 133, 356, 457, 758, 1080, 1102
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 1065
HpyF3I CTNAG 3 cut(s) 234, 480, 1038
HpySE526I ACGT 5 cut(s) 42, 90, 216, 513, 601
Hsp92I GRCGYC 2 cut(s) 42, 78
Hsp92II CATG 3 cut(s) 209, 457, 734
HspAI GCGC 2 cut(s) 15, 78
KasI GGCGCC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 208, 793, 982
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 7 cut(s) 100, 157, 380, 656, 705, 883, 913
LweI GCATC 2 cut(s) 120, 655
MaeI CTAG 2 cut(s) 384, 444
MaeII ACGT 5 cut(s) 42, 90, 216, 513, 601
MaeIII GTNAC 4 cut(s) 193, 282, 386, 1051
MalI GATC 3 cut(s) 210, 795, 984
MbiI CCGCTC 1 cut(s) 659
MboI GATC 3 cut(s) 208, 793, 982
MboII GAAGA 7 cut(s) 74, 98, 136, 259, 617, 815, 863
MhlI GDGCHC 5 cut(s) 710, 760, 786, 957, 1082
MluCI AATT 4 cut(s) 336, 361, 829, 1145
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 3 cut(s) 299, 338, 910
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 501, 1128
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 2 cut(s) 81, 434
MspR9I CCNGG 3 cut(s) 189, 348, 435
MvaI CCWGG 2 cut(s) 189, 348
MwoI GCNNNNNNNGC 2 cut(s) 665, 1065
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 1 cut(s) 435
NdeII GATC 3 cut(s) 208, 793, 982
NlaIII CATG 3 cut(s) 209, 457, 734
NlaIV GGNNCC 4 cut(s) 79, 488, 544, 784
NmuCI GTSAC 2 cut(s) 386, 1051
NspI RCATGY 2 cut(s) 457, 734
PagI TCATGA 1 cut(s) 205
PaqCI CACCTGC 2 cut(s) 401, 1059
PciSI GCTCTTC 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 392, 766
PkrI GCNGC 4 cut(s) 172, 175, 404, 486
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 514
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 187, 346
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 187, 346
PspN4I GGNNCC 4 cut(s) 79, 488, 544, 784
PspOMI GGGCCC 1 cut(s) 782
PspPI GGNCC 4 cut(s) 486, 782, 783, 997
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 2 cut(s) 353, 911
RsaI GTAC 3 cut(s) 10, 219, 891
RsaNI GTAC 3 cut(s) 9, 218, 890
RseI CAYNNNNRTG 1 cut(s) 735
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 2 cut(s) 501, 1128
SatI GCNGC 4 cut(s) 171, 174, 403, 485
Sau3AI GATC 3 cut(s) 208, 793, 982
Sau96I GGNCC 4 cut(s) 486, 782, 783, 997
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 3 cut(s) 189, 348, 435
SduI GDGCHC 5 cut(s) 710, 760, 786, 957, 1082
SfaNI GCATC 2 cut(s) 120, 655
SfcI CTRYAG 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 336, 361, 829, 1145
SsiI CCGC 6 cut(s) 170, 173, 402, 484, 523, 659
SspDI GGCGCC 1 cut(s) 77
SspI AATATT 2 cut(s) 370, 505
SspMI CTAG 2 cut(s) 384, 444
StyD4I CCNGG 3 cut(s) 187, 346, 433
StyI CCWWGG 2 cut(s) 470, 1000
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 5 cut(s) 45, 93, 219, 516, 604
TaqI TCGA 3 cut(s) 36, 777, 1149
TasI AATT 4 cut(s) 336, 361, 829, 1145
TauI GCSGC 4 cut(s) 173, 176, 405, 487
TfiI GAWTC 2 cut(s) 392, 766
Tru1I TTAA 2 cut(s) 501, 1128
Tru9I TTAA 2 cut(s) 501, 1128
TscAI CASTG 2 cut(s) 34, 1089
TseFI GTSAC 2 cut(s) 386, 1051
Tsp45I GTSAC 2 cut(s) 386, 1051
TspDTI ATGAA 5 cut(s) 194, 258, 816, 864, 981
TspRI CASTG 2 cut(s) 34, 1089
VneI GTGCAC 2 cut(s) 756, 1078
VpaK11BI GGWCC 1 cut(s) 997
XapI RAATTY 1 cut(s) 1145
XceI RCATGY 2 cut(s) 457, 734
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 384, 444
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.