Prupe.6G070500_v2.0.a1

Transcription initiation factor IIA large

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
4831806 .. 4837152
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G070500.2

Sequence Viewer

Length: 1176 bp
ATGGCGACCTCCACGAGCAGTGTCTACGTCAGTGTTATTGAGGACGTCATCAACAAGGTTCGCGAAGAGTTCATGAACAGCGGCCCGGGAGAAGACGTTCTCAAGGAGCTCCAAGGAACTTGGGAGGCGAAGATGATGCAAGCCGGTGTAGTAAATACTCCTATAGAGAGAGCTGTGGCGTCAAAGCCAACGCCTGGTAGTGCTATTACTCCAGTTCACGATCTCAATGTACCTTATGAAGGGACCGAGGAGTACGAGACGCCCACTGCTGAGATACTCTTCCCTCCAACCCCGTTGCAAACCCCAATTCAGACGCCTCTACCCGGAACTGGGGACAACTTATATAACATTCCTACCGGAGGTAGTGACTTTTCTGCATCTGCAAACGAGTCTGGTAGCAGCAATGGTGGCAGCAATACAGAGCTGAAAGCTGGAAGACCTAGCCCCTACATGCAACCTCCTTCTCCTTGGATGAACCACCGACCCCCTCTTGATGTTAATATTGCTTACGTGGAAGGGCGGGATGAGGTGGACAGAGGGACCTCTCATCAACCCCCGACACAGGACTTTTTCCAGATGAATTCTGGAAAGCGAAAACGTGAAGATCTTGCTTCACAGTATCCAGCTGGTGGATTTATACCCCAACAAGATGGAGCTGGAGATGCTGCACCTGAGGTTTTTGAGATTGAGGTCAGTGGAGGGAGCACTTCTATTGGTGGGCGTGCATGTAGTGAGATGGTAACTTGTGCACTGAGGTCAACTCCCAAGATTCCTCAACTTGATGGGCCAATTCCTGATCCCTATGATGACGCGCTTTCTACTCCCAATATATATAATTATCAAGGAACTTTCAACGAAGACTACAACGTTGCCAATACACCTACACCCAATGATCTACCAGTCAGCACTCCAGCTCCTGTTGTTCAAAATGATGTTGGAGATGACGACGACGACGAGCCCCCATTGAATGAAAATGATGATGATGATTTGGACGATGTGGACCAAGGGGAGGAGGTAAACACACACCATTTGGTTTTGGCTCAGTTTGACAAGGTGACACGCACCAAGAGCAGGTGGAAGTGCACATTGAAGGATGGGATTATGCGCATAAACAATAAGGATATTCTCTTCAATAAGGTGAAGCGACTGGAGAATTTGACTTCTGATTTTGCTTGA

Protein Analysis

392

Amino Acids

42.5

Weight (kDa)

4.31

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1062
AatII GACGTC 1 cut(s) 48
Acc16I TGCGCA 1 cut(s) 1106
Acc36I ACCTGC 1 cut(s) 1062
AccB7I CCANNNNNTGG 2 cut(s) 194, 629
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 63, 812
AciI CCGC 2 cut(s) 81, 520
AclI AACGTT 1 cut(s) 867
AclWI GGATC 1 cut(s) 791
AcsI RAATTY 2 cut(s) 580, 1153
AcyI GRCGYC 4 cut(s) 45, 179, 260, 314
AfaI GTAC 2 cut(s) 231, 254
AgsI TTSAA 5 cut(s) 853, 926, 967, 1090, 1132
AjnI CCWGG 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 81, 113
AluBI AGCT 7 cut(s) 109, 173, 424, 431, 626, 656, 914
AluI AGCT 7 cut(s) 109, 173, 424, 431, 626, 656, 914
Alw21I GWGCWC 4 cut(s) 111, 707, 751, 1085
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 2 cut(s) 747, 1081
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 82, 785
ApaLI GTGCAC 2 cut(s) 747, 1081
ApeKI GCWGC 3 cut(s) 399, 411, 665
ApoI RAATTY 2 cut(s) 580, 1153
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 2 cut(s) 814, 1107
AspS9I GGNCC 5 cut(s) 83, 243, 540, 785, 1000
AsuC2I CCSGG 3 cut(s) 86, 87, 324
AsuHPI GGTGA 2 cut(s) 1066, 1150
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 3 cut(s) 243, 540, 1000
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 2 cut(s) 751, 1085
BanII GRGCYC 2 cut(s) 111, 960
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 3 cut(s) 99, 442, 864
Bbv12I GWGCWC 4 cut(s) 111, 707, 751, 1085
BbvI GCAGC 3 cut(s) 411, 423, 652
BccI CCATC 4 cut(s) 644, 730, 776, 1088
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 630
BcnI CCSGG 3 cut(s) 86, 87, 324
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 1062
BfuI GTATCC 1 cut(s) 630
BglII AGATCT 1 cut(s) 604
BisI GCNGC 4 cut(s) 82, 400, 412, 666
BlsI GCNGC 4 cut(s) 83, 401, 413, 667
Bme1390I CCNGG 4 cut(s) 86, 87, 195, 324
Bme18I GGWCC 3 cut(s) 243, 540, 1000
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 5 cut(s) 83, 243, 540, 785, 1000
BmiI GGNNCC 2 cut(s) 244, 541
BmrFI CCNGG 4 cut(s) 86, 87, 195, 324
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 3 cut(s) 126, 386, 652
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 3 cut(s) 99, 442, 864
BplI GAGNNNNNCTC 2 cut(s) 745, 777
BpmI CTGGAG 4 cut(s) 195, 678, 894, 1169
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 3 cut(s) 86, 87, 324
BsaAI YACGTR 1 cut(s) 511
BsaHI GRCGYC 4 cut(s) 45, 179, 260, 314
BsaJI CCNNGG 5 cut(s) 85, 112, 246, 467, 1003
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 898, 928
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 4 cut(s) 212, 334, 899, 1152
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 5 cut(s) 85, 112, 246, 467, 1003
BseGI GGATG 3 cut(s) 477, 529, 1099
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 4 cut(s) 261, 663, 743, 1055
BseNI ACTGG 4 cut(s) 212, 334, 899, 1152
BseRI GAGGAG 2 cut(s) 263, 1025
BseSI GKGCMC 2 cut(s) 751, 1085
BseXI GCAGC 3 cut(s) 411, 423, 652
BsgI GTGCAG 1 cut(s) 651
Bsh1236I CGCG 2 cut(s) 63, 812
BshFI GGCC 2 cut(s) 84, 787
BsiHKAI GWGCWC 4 cut(s) 111, 707, 751, 1085
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 86, 144, 324, 357
BslFI GGGAC 3 cut(s) 256, 347, 553
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 3 cut(s) 256, 347, 553
BsnI GGCC 2 cut(s) 84, 787
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 5 cut(s) 111, 707, 751, 960, 1085
Bsp143I GATC 4 cut(s) 220, 604, 796, 892
Bsp68I TCGCGA 1 cut(s) 63
BspACI CCGC 2 cut(s) 81, 520
BspANI GGCC 2 cut(s) 84, 787
BspCNI CTCAG 4 cut(s) 262, 664, 744, 1054
BspFNI CGCG 2 cut(s) 63, 812
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 244, 541
BspMI ACCTGC 1 cut(s) 1062
BspPI GGATC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 4 cut(s) 212, 334, 899, 1152
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 5 cut(s) 85, 112, 246, 467, 1003
BssMI GATC 4 cut(s) 220, 604, 796, 892
BssNI GRCGYC 4 cut(s) 45, 179, 260, 314
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 3 cut(s) 112, 467, 1003
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 618
Bst6I CTCTTC 3 cut(s) 60, 284, 1133
BstACI GRCGYC 4 cut(s) 45, 179, 260, 314
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 141, 723
BstDEI CTNAG 4 cut(s) 270, 672, 752, 1041
BstENI CCTNNNNNAGG 2 cut(s) 237, 357
BstF5I GGATG 3 cut(s) 477, 529, 1099
BstFNI CGCG 2 cut(s) 63, 812
BstHHI GCGC 2 cut(s) 814, 1107
BstKTI GATC 4 cut(s) 223, 607, 799, 895
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 220, 604, 796, 892
BstMWI GCNNNNNNNGC 3 cut(s) 408, 662, 1068
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 454, 729
BstSCI CCNGG 4 cut(s) 84, 85, 193, 322
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 2 cut(s) 751, 1085
BstUI CGCG 2 cut(s) 63, 812
BstV1I GCAGC 3 cut(s) 411, 423, 652
BstV2I GAAGAC 3 cut(s) 99, 442, 864
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 650
BstYI RGATCY 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 84, 787
BtsCI GGATG 3 cut(s) 477, 529, 1099
BtsI GCAGTG 2 cut(s) 25, 264
BtsIMutI CAGTG 5 cut(s) 25, 37, 264, 700, 749
BtuMI TCGCGA 1 cut(s) 63
BveI ACCTGC 1 cut(s) 1062
Cac8I GCNNGC 2 cut(s) 141, 723
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 814, 1107
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 5 cut(s) 83, 243, 540, 785, 1000
Cfr9I CCCGGG 1 cut(s) 85
CseI GACGC 4 cut(s) 168, 268, 322, 818
Csp6I GTAC 2 cut(s) 230, 253
CviAII CATG 3 cut(s) 73, 451, 726
CviQI GTAC 2 cut(s) 230, 253
DdeI CTNAG 4 cut(s) 270, 672, 752, 1041
DpnI GATC 4 cut(s) 222, 606, 798, 894
DpnII GATC 4 cut(s) 220, 604, 796, 892
Eam1104I CTCTTC 3 cut(s) 60, 284, 1133
EarI CTCTTC 3 cut(s) 60, 284, 1133
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 112, 467, 1003
Eco24I GRGCYC 2 cut(s) 111, 960
Eco47I GGWCC 3 cut(s) 243, 540, 1000
Eco53kI GAGCTC 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 2 cut(s) 237, 357
EcoO109I RGGNCCY 1 cut(s) 540
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 3 cut(s) 112, 467, 1003
EcoT38I GRGCYC 2 cut(s) 111, 960
ErhI CCWWGG 3 cut(s) 112, 467, 1003
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 3 cut(s) 76, 454, 729
FaqI GGGAC 3 cut(s) 256, 347, 553
FatI CATG 3 cut(s) 72, 450, 725
FauI CCCGC 1 cut(s) 513
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 82, 400, 412, 666
FokI GGATG 3 cut(s) 484, 536, 1106
FriOI GRGCYC 2 cut(s) 111, 960
Fsp4HI GCNGC 4 cut(s) 82, 400, 412, 666
FspAI RTGCGCAY 1 cut(s) 1106
FspBI CTAG 1 cut(s) 441
FspI TGCGCA 1 cut(s) 1106
GlaI GCGC 2 cut(s) 813, 1106
GluI GCNGC 4 cut(s) 82, 400, 412, 666
GsuI CTGGAG 4 cut(s) 195, 678, 894, 1169
HaeIII GGCC 2 cut(s) 84, 787
HapII CCGG 4 cut(s) 86, 144, 324, 357
HgaI GACGC 4 cut(s) 168, 268, 322, 818
HhaI GCGC 2 cut(s) 814, 1107
Hin1I GRCGYC 4 cut(s) 45, 179, 260, 314
Hin1II CATG 3 cut(s) 76, 454, 729
Hin6I GCGC 2 cut(s) 812, 1105
HinP1I GCGC 2 cut(s) 812, 1105
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HinfI GANTC 2 cut(s) 389, 769
HpaII CCGG 4 cut(s) 86, 144, 324, 357
HphI GGTGA 2 cut(s) 1066, 1150
Hpy166II GTNNAC 8 cut(s) 25, 217, 532, 749, 759, 1000, 1018, 1083
Hpy188I TCNGA 2 cut(s) 312, 1165
Hpy188III TCNNGA 7 cut(s) 62, 73, 218, 491, 574, 585, 794
Hpy8I GTNNAC 8 cut(s) 25, 217, 532, 749, 759, 1000, 1018, 1083
Hpy99I CGWCG 3 cut(s) 950, 953, 956
HpyAV CCTTC 4 cut(s) 233, 471, 509, 1084
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4IV ACGT 6 cut(s) 27, 45, 96, 510, 598, 867
HpyCH4V TGCA 9 cut(s) 139, 298, 377, 383, 454, 668, 725, 749, 1083
HpyF10VI GCNNNNNNNGC 3 cut(s) 408, 662, 1068
HpyF3I CTNAG 4 cut(s) 270, 672, 752, 1041
HpySE526I ACGT 6 cut(s) 27, 45, 96, 510, 598, 867
Hsp92I GRCGYC 4 cut(s) 45, 179, 260, 314
Hsp92II CATG 3 cut(s) 76, 454, 729
HspAI GCGC 2 cut(s) 812, 1105
Kzo9I GATC 4 cut(s) 220, 604, 796, 892
LmnI GCTCC 5 cut(s) 106, 114, 653, 702, 919
Lsp1109I GCAGC 3 cut(s) 411, 423, 652
LweI GCATC 3 cut(s) 126, 386, 652
MaeI CTAG 1 cut(s) 441
MaeII ACGT 6 cut(s) 27, 45, 96, 510, 598, 867
MaeIII GTNAC 3 cut(s) 365, 739, 1054
MalI GATC 4 cut(s) 222, 606, 798, 894
MboI GATC 4 cut(s) 220, 604, 796, 892
MboII GAAGA 8 cut(s) 77, 104, 142, 271, 447, 614, 869, 1120
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 5 cut(s) 111, 707, 751, 960, 1085
MluCI AATT 5 cut(s) 306, 580, 789, 835, 1153
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 311, 916
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 81, 626
MspI CCGG 4 cut(s) 86, 144, 324, 357
MspR9I CCNGG 4 cut(s) 86, 87, 195, 324
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 2 cut(s) 63, 812
MwoI GCNNNNNNNGC 3 cut(s) 408, 662, 1068
NciI CCSGG 3 cut(s) 86, 87, 324
NdeII GATC 4 cut(s) 220, 604, 796, 892
NlaIII CATG 3 cut(s) 76, 454, 729
NlaIV GGNNCC 2 cut(s) 244, 541
NmuCI GTSAC 2 cut(s) 365, 1054
NruI TCGCGA 1 cut(s) 63
NsbI TGCGCA 1 cut(s) 1106
NspI RCATGY 2 cut(s) 454, 729
PagI TCATGA 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 769
PflMI CCANNNNNTGG 2 cut(s) 194, 629
PkrI GCNGC 4 cut(s) 83, 401, 413, 667
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 511
PpuMI RGGWCCY 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 244, 541
PspPI GGNCC 5 cut(s) 83, 243, 540, 785, 1000
PspPPI RGGWCCY 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 626
RruI TCGCGA 1 cut(s) 63
RsaI GTAC 2 cut(s) 231, 254
RsaNI GTAC 2 cut(s) 230, 253
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 4 cut(s) 82, 400, 412, 666
Sau3AI GATC 4 cut(s) 220, 604, 796, 892
Sau96I GGNCC 5 cut(s) 83, 243, 540, 785, 1000
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 4 cut(s) 86, 87, 195, 324
SduI GDGCHC 5 cut(s) 111, 707, 751, 960, 1085
SfaNI GCATC 3 cut(s) 126, 386, 652
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 3 cut(s) 243, 540, 1000
SmaI CCCGGG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 306, 580, 789, 835, 1153
SsiI CCGC 2 cut(s) 81, 520
SspI AATATT 1 cut(s) 502
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 4 cut(s) 84, 85, 193, 322
StyI CCWWGG 3 cut(s) 112, 467, 1003
TaaI ACNGT 1 cut(s) 618
TaiI ACGT 6 cut(s) 30, 48, 99, 513, 601, 870
TaqII GACCGA 1 cut(s) 260
TasI AATT 5 cut(s) 306, 580, 789, 835, 1153
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 5 cut(s) 25, 37, 271, 700, 756
TseFI GTSAC 2 cut(s) 365, 1054
TseI GCWGC 3 cut(s) 399, 411, 665
Tsp45I GTSAC 2 cut(s) 365, 1054
TspDTI ATGAA 6 cut(s) 61, 89, 252, 488, 593, 984
TspMI CCCGGG 1 cut(s) 85
TspRI CASTG 5 cut(s) 25, 37, 271, 700, 756
Van91I CCANNNNNTGG 2 cut(s) 194, 629
VneI GTGCAC 2 cut(s) 747, 1081
VpaK11BI GGWCC 3 cut(s) 243, 540, 1000
XagI CCTNNNNNAGG 2 cut(s) 237, 357
XapI RAATTY 2 cut(s) 580, 1153
XceI RCATGY 2 cut(s) 454, 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 581
XmaI CCCGGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 441
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.