Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008541

Physical Location & Seq

Genomic Coordinates Forward (+)

51105335 .. 51106143

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

211

Amino Acids

23.25

Weight (kDa)

5.09

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	4.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07470 AT1G07470 AT1G07480 AT1G07480 AT1G07480
fragaria_vesca	FvH4_3g36940
malus_domestica	MD03G1086200.v1.1 MD11G1094800.v1.1
prunus_persica	Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1
pyrus_communis	pycom03g06830 pycom11g08050
rosa_chinensis	RchiOBHm_Chr5g0066351
rosa_laevigata	RLG00000035853
rosa_multiflora	Rmu_ssc0000249.1_g000006
rosa_roxburghii	Rroxscaffold_1G00014790
rosa_rugosa	Rorug05G0377500
rosa_samantha	Rh5AG436000 Rh5BG452400 Rh5CG474700 Rh5DG467400
rosa_wichuraiana	Rw5G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	1 cut(s)	570
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	4 cut(s)	141, 327, 340, 375
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	2 cut(s)	92, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 604, 626
AluI	AGCT	4 cut(s)	53, 199, 604, 626
Alw21I	GWGCWC	3 cut(s)	492, 544, 606
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	488, 540
AlwI	GGATC	4 cut(s)	141, 327, 340, 375
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	620
ApaLI	GTGCAC	2 cut(s)	488, 540
ApeKI	GCWGC	3 cut(s)	50, 293, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	4 cut(s)	164, 306, 492, 544
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	262, 606
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	3 cut(s)	492, 544, 606
BbvI	GCAGC	3 cut(s)	62, 280, 613
BccI	CCATC	2 cut(s)	368, 625
BceAI	ACGGC	2 cut(s)	72, 508
BciT130I	CCWGG	2 cut(s)	94, 458
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	3 cut(s)	315, 360, 634
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 627
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	3 cut(s)	52, 295, 628
Bme1390I	CCNGG	2 cut(s)	94, 458
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BmrFI	CCNGG	2 cut(s)	94, 458
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 438
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	113, 620
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	205, 299, 421
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	94, 458
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	428, 617
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	579, 619
BseNI	ACTGG	3 cut(s)	205, 299, 421
BseRI	GAGGAG	3 cut(s)	44, 459, 462
BseSI	GKGCMC	4 cut(s)	164, 306, 492, 544
BseXI	GCAGC	3 cut(s)	62, 280, 613
BsiHKAI	GWGCWC	3 cut(s)	492, 544, 606
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	578, 618
BspEI	TCCGGA	1 cut(s)	620
BspLI	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
BspPI	GGATC	4 cut(s)	141, 327, 340, 375
BsrI	ACTGG	3 cut(s)	205, 299, 421
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 458
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	565, 605
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	428, 617
BstKTI	GATC	6 cut(s)	136, 189, 335, 383, 391, 454
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
BstNI	CCWGG	2 cut(s)	94, 458
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	92, 456
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	4 cut(s)	164, 306, 492, 544
BstV1I	GCAGC	3 cut(s)	62, 280, 613
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	4 cut(s)	133, 186, 332, 380
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	4 cut(s)	133, 186, 332, 380
BtsCI	GGATG	2 cut(s)	428, 617
BtsIMutI	CAGTG	2 cut(s)	306, 586
Cfr13I	GGNCC	1 cut(s)	354
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	3 cut(s)	70, 307, 545
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	565, 605
DpnI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
DpnII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	262, 606
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	92, 456
EcoT38I	GRGCYC	2 cut(s)	262, 606
FaeI	CATG	3 cut(s)	73, 310, 548
FaiI	YATR	6 cut(s)	71, 144, 210, 216, 308, 546
FatI	CATG	3 cut(s)	69, 306, 544
Fnu4HI	GCNGC	3 cut(s)	51, 294, 627
FokI	GGATG	2 cut(s)	415, 604
FriOI	GRGCYC	2 cut(s)	262, 606
Fsp4HI	GCNGC	3 cut(s)	51, 294, 627
FspBI	CTAG	3 cut(s)	315, 360, 634
GluI	GCNGC	3 cut(s)	51, 294, 627
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 438
HapII	CCGG	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	73, 310, 548
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	357, 490, 542
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 599, 621
Hpy8I	GTNNAC	3 cut(s)	357, 490, 542
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	3 cut(s)	252, 501, 591
HpyCH4V	TGCA	3 cut(s)	436, 490, 542
HpyF3I	CTNAG	2 cut(s)	565, 605
HpySE526I	ACGT	3 cut(s)	252, 501, 591
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	73, 310, 548
Kpn2I	TCCGGA	1 cut(s)	620
Kzo9I	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
LmnI	GCTCC	2 cut(s)	301, 623
Lsp1109I	GCAGC	3 cut(s)	62, 280, 613
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 360, 634
MaeII	ACGT	3 cut(s)	252, 501, 591
MaeIII	GTNAC	2 cut(s)	509, 572
MalI	GATC	6 cut(s)	135, 188, 334, 382, 390, 453
MboI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
MboII	GAAGA	2 cut(s)	464, 529
MflI	RGATCY	4 cut(s)	133, 186, 332, 380
MhlI	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
MluCI	AATT	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	94, 458
MvaI	CCWGG	2 cut(s)	94, 458
NdeII	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
NlaIII	CATG	3 cut(s)	73, 310, 548
NlaIV	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	3 cut(s)	52, 295, 628
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	92, 456
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	92, 456
PspN4I	GGNNCC	5 cut(s)	6, 245, 334, 355, 403
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	4 cut(s)	133, 186, 332, 380
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 627
Sau3AI	GATC	6 cut(s)	133, 186, 332, 380, 388, 451
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	94, 458
SduI	GDGCHC	6 cut(s)	164, 262, 306, 492, 544, 606
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 599
SmoI	CTYRAG	3 cut(s)	128, 261, 599
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	3 cut(s)	315, 360, 634
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	92, 456
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	3 cut(s)	255, 504, 594
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	100, 123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	306, 586
TseI	GCWGC	3 cut(s)	50, 293, 626
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	306, 586
VneI	GTGCAC	2 cut(s)	488, 540
VpaK11BI	GGWCC	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	315, 360, 634
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.