Transcription initiation factor IIA large
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07470 AT1G07470 AT1G07480 AT1G07480 AT1G07480 |
| fragaria_vesca | FvH4_3g36940 |
| malus_domestica | MD03G1086200.v1.1 MD11G1094800.v1.1 |
| prunus_persica | Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 |
| pyrus_communis | pycom03g06830 pycom11g08050 |
| rosa_chinensis | RchiOBHm_Chr5g0066351 |
| rosa_laevigata | RLG00000035853 |
| rosa_multiflora | Rmu_ssc0000249.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00014790 |
| rosa_rugosa | Rorug05G0377500 |
| rosa_samantha | Rh5AG436000 Rh5BG452400 Rh5CG474700 Rh5DG467400 |
| rosa_wichuraiana | Rw5G040840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 958 |
| Acc36I | ACCTGC | 1 cut(s) | 958 |
| AccI | GTMKAC | 1 cut(s) | 90 |
| AccII | CGCG | 2 cut(s) | 129, 1129 |
| AciI | CCGC | 5 cut(s) | 48, 71, 127, 553, 592 |
| AclWI | GGATC | 1 cut(s) | 863 |
| AcsI | RAATTY | 2 cut(s) | 652, 1217 |
| AcuI | CTGAAG | 1 cut(s) | 188 |
| AcvI | CACGTG | 2 cut(s) | 17, 33 |
| AfaI | GTAC | 3 cut(s) | 294, 317, 822 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 263, 302, 401, 407, 437, 634 |
| AgsI | TTSAA | 9 cut(s) | 63, 179, 389, 831, 922, 995, 1036, 1159, 1201 |
| AjnI | CCWGG | 2 cut(s) | 256, 400 |
| AluBI | AGCT | 8 cut(s) | 53, 175, 698, 728, 850, 883, 983, 1084 |
| AluI | AGCT | 8 cut(s) | 53, 175, 698, 728, 850, 883, 983, 1084 |
| Alw21I | GWGCWC | 3 cut(s) | 779, 977, 1154 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| Alw44I | GTGCAC | 1 cut(s) | 1150 |
| AlwI | GGATC | 1 cut(s) | 863 |
| Ama87I | CYCGRG | 1 cut(s) | 152 |
| AoxI | GGCC | 4 cut(s) | 148, 612, 857, 1107 |
| ApaLI | GTGCAC | 1 cut(s) | 1150 |
| ApeKI | GCWGC | 3 cut(s) | 242, 471, 737 |
| ApoI | RAATTY | 2 cut(s) | 652, 1217 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 162, 678 |
| AspLEI | GCGC | 1 cut(s) | 1131 |
| AspS9I | GGNCC | 7 cut(s) | 36, 124, 149, 612, 857, 1069, 1108 |
| AsuC2I | CCSGG | 2 cut(s) | 153, 154 |
| AvaI | CYCGRG | 1 cut(s) | 152 |
| AvaII | GGWCC | 3 cut(s) | 36, 124, 1069 |
| BaeGI | GKGCMC | 1 cut(s) | 1154 |
| BanII | GRGCYC | 1 cut(s) | 1029 |
| BauI | CACGAG | 1 cut(s) | 816 |
| BbrPI | CACGTG | 2 cut(s) | 17, 33 |
| BbsI | GAAGAC | 3 cut(s) | 165, 514, 933 |
| Bbv12I | GWGCWC | 3 cut(s) | 779, 977, 1154 |
| BbvCI | CCTCAGC | 1 cut(s) | 846 |
| BbvI | GCAGC | 3 cut(s) | 254, 483, 724 |
| BccI | CCATC | 2 cut(s) | 716, 848 |
| BceAI | ACGGC | 3 cut(s) | 163, 340, 1180 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 184, 218 |
| BciT130I | CCWGG | 2 cut(s) | 258, 402 |
| BcnI | CCSGG | 2 cut(s) | 153, 154 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BfaI | CTAG | 1 cut(s) | 513 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BfuAI | ACCTGC | 1 cut(s) | 958 |
| BisI | GCNGC | 4 cut(s) | 72, 243, 472, 738 |
| BlsI | GCNGC | 4 cut(s) | 73, 244, 473, 739 |
| Bme1390I | CCNGG | 4 cut(s) | 153, 154, 258, 402 |
| Bme18I | GGWCC | 3 cut(s) | 36, 124, 1069 |
| BmeT110I | CYCGRG | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 7 cut(s) | 36, 124, 149, 612, 857, 1069, 1108 |
| BmiI | GGNNCC | 2 cut(s) | 151, 613 |
| BmrFI | CCNGG | 4 cut(s) | 153, 154, 258, 402 |
| BmrI | ACTGGG | 2 cut(s) | 417, 1105 |
| BmsI | GCATC | 2 cut(s) | 83, 724 |
| BmuI | ACTGGG | 2 cut(s) | 417, 1105 |
| BpiI | GAAGAC | 3 cut(s) | 165, 514, 933 |
| BpmI | CTGGAG | 5 cut(s) | 258, 456, 629, 750, 963 |
| Bpu10I | CCTNAGC | 1 cut(s) | 846 |
| BpuMI | CCSGG | 2 cut(s) | 153, 154 |
| BsaAI | YACGTR | 3 cut(s) | 17, 33, 583 |
| BsaJI | CCNNGG | 4 cut(s) | 151, 152, 153, 1072 |
| BsaWI | WCCGGW | 2 cut(s) | 985, 1211 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 937, 967, 967, 997 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 263, 302, 401, 407, 437, 634 |
| Bse1I | ACTGG | 6 cut(s) | 275, 412, 439, 789, 968, 1111 |
| Bse3DI | GCAATG | 1 cut(s) | 481 |
| BseBI | CCWGG | 2 cut(s) | 258, 402 |
| BseDI | CCNNGG | 4 cut(s) | 151, 152, 153, 1072 |
| BseGI | GGATG | 6 cut(s) | 115, 426, 549, 601, 1066, 1195 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 263, 302, 401, 407, 437, 634 |
| BseMI | GCAATG | 1 cut(s) | 481 |
| BseMII | CTCAG | 5 cut(s) | 45, 300, 324, 735, 860 |
| BseNI | ACTGG | 6 cut(s) | 275, 412, 439, 789, 968, 1111 |
| BseRI | GAGGAG | 2 cut(s) | 146, 326 |
| BseSI | GKGCMC | 1 cut(s) | 1154 |
| BseXI | GCAGC | 3 cut(s) | 254, 483, 724 |
| BseYI | CCCAGC | 1 cut(s) | 714 |
| BsgI | GTGCAG | 3 cut(s) | 39, 669, 723 |
| Bsh1236I | CGCG | 2 cut(s) | 129, 1129 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1212 |
| BshFI | GGCC | 4 cut(s) | 150, 614, 859, 1109 |
| BsiEI | CGRYCG | 1 cut(s) | 1212 |
| BsiHKAI | GWGCWC | 3 cut(s) | 779, 977, 1154 |
| BsiHKCI | CYCGRG | 1 cut(s) | 152 |
| BsiSI | CCGG | 3 cut(s) | 153, 986, 1212 |
| BslFI | GGGAC | 2 cut(s) | 319, 425 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 263, 302, 401, 407, 437, 634 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsmBI | CGTCTC | 1 cut(s) | 488 |
| BsmFI | GGGAC | 2 cut(s) | 319, 425 |
| BsnI | GGCC | 4 cut(s) | 150, 614, 859, 1109 |
| BsoBI | CYCGRG | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 4 cut(s) | 779, 977, 1029, 1154 |
| Bsp143I | GATC | 2 cut(s) | 283, 868 |
| BspACI | CCGC | 5 cut(s) | 48, 71, 127, 553, 592 |
| BspANI | GGCC | 4 cut(s) | 150, 614, 859, 1109 |
| BspCNI | CTCAG | 5 cut(s) | 46, 301, 325, 736, 859 |
| BspFNI | CGCG | 2 cut(s) | 129, 1129 |
| BspHI | TCATGA | 1 cut(s) | 138 |
| BspLI | GGNNCC | 2 cut(s) | 151, 613 |
| BspMI | ACCTGC | 1 cut(s) | 958 |
| BspPI | GGATC | 1 cut(s) | 863 |
| BsrDI | GCAATG | 1 cut(s) | 481 |
| BsrI | ACTGG | 6 cut(s) | 275, 412, 439, 789, 968, 1111 |
| BssECI | CCNNGG | 4 cut(s) | 151, 152, 153, 1072 |
| BssMI | GATC | 2 cut(s) | 283, 868 |
| BssSI | CACGAG | 1 cut(s) | 816 |
| BssT1I | CCWWGG | 1 cut(s) | 1072 |
| Bst2BI | CACGAG | 1 cut(s) | 816 |
| Bst2UI | CCWGG | 2 cut(s) | 258, 402 |
| Bst4CI | ACNGT | 2 cut(s) | 297, 690 |
| Bst6I | CTCTTC | 1 cut(s) | 1202 |
| BstBAI | YACGTR | 3 cut(s) | 17, 33, 583 |
| BstC8I | GCNNGC | 2 cut(s) | 207, 943 |
| BstDEI | CTNAG | 5 cut(s) | 54, 309, 333, 744, 846 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 435 |
| BstF5I | GGATG | 6 cut(s) | 115, 426, 549, 601, 1066, 1195 |
| BstFNI | CGCG | 2 cut(s) | 129, 1129 |
| BstHHI | GCGC | 1 cut(s) | 1131 |
| BstKTI | GATC | 2 cut(s) | 286, 871 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMBI | GATC | 2 cut(s) | 283, 868 |
| BstMCI | CGRYCG | 1 cut(s) | 1212 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 734, 794, 856, 1137 |
| BstNI | CCWGG | 2 cut(s) | 258, 402 |
| BstNSI | RCATGY | 1 cut(s) | 526 |
| BstSCI | CCNGG | 4 cut(s) | 151, 152, 256, 400 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstSLI | GKGCMC | 1 cut(s) | 1154 |
| BstUI | CGCG | 2 cut(s) | 129, 1129 |
| BstV1I | GCAGC | 3 cut(s) | 254, 483, 724 |
| BstV2I | GAAGAC | 3 cut(s) | 165, 514, 933 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BsuRI | GGCC | 4 cut(s) | 150, 614, 859, 1109 |
| BtsCI | GGATG | 6 cut(s) | 115, 426, 549, 601, 1066, 1195 |
| BtsI | GCAGTG | 3 cut(s) | 91, 268, 327 |
| BtsIMutI | CAGTG | 5 cut(s) | 91, 268, 327, 772, 975 |
| BveI | ACCTGC | 1 cut(s) | 958 |
| Cac8I | GCNNGC | 2 cut(s) | 207, 943 |
| CciI | TCATGA | 1 cut(s) | 138 |
| CfoI | GCGC | 1 cut(s) | 1131 |
| Cfr13I | GGNCC | 7 cut(s) | 36, 124, 149, 612, 857, 1069, 1108 |
| Cfr9I | CCCGGG | 1 cut(s) | 152 |
| Csp6I | GTAC | 3 cut(s) | 293, 316, 821 |
| CviAII | CATG | 6 cut(s) | 45, 139, 186, 523, 798, 959 |
| CviQI | GTAC | 3 cut(s) | 293, 316, 821 |
| DdeI | CTNAG | 5 cut(s) | 54, 309, 333, 744, 846 |
| DpnI | GATC | 2 cut(s) | 285, 870 |
| DpnII | GATC | 2 cut(s) | 283, 868 |
| Eam1104I | CTCTTC | 1 cut(s) | 1202 |
| EarI | CTCTTC | 1 cut(s) | 1202 |
| Eco130I | CCWWGG | 1 cut(s) | 1072 |
| Eco24I | GRGCYC | 1 cut(s) | 1029 |
| Eco47I | GGWCC | 3 cut(s) | 36, 124, 1069 |
| Eco57I | CTGAAG | 1 cut(s) | 188 |
| Eco72I | CACGTG | 2 cut(s) | 17, 33 |
| Eco88I | CYCGRG | 1 cut(s) | 152 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 435 |
| EcoO109I | RGGNCCY | 1 cut(s) | 612 |
| EcoRI | GAATTC | 1 cut(s) | 652 |
| EcoRII | CCWGG | 2 cut(s) | 256, 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 1072 |
| EcoT38I | GRGCYC | 1 cut(s) | 1029 |
| ErhI | CCWWGG | 1 cut(s) | 1072 |
| Esp3I | CGTCTC | 1 cut(s) | 488 |
| FaeI | CATG | 6 cut(s) | 48, 142, 189, 526, 801, 962 |
| FaqI | GGGAC | 2 cut(s) | 319, 425 |
| FatI | CATG | 6 cut(s) | 44, 138, 185, 522, 797, 958 |
| FauI | CCCGC | 1 cut(s) | 585 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 4 cut(s) | 72, 243, 472, 738 |
| FokI | GGATG | 6 cut(s) | 122, 413, 556, 608, 1073, 1202 |
| FriOI | GRGCYC | 1 cut(s) | 1029 |
| Fsp4HI | GCNGC | 4 cut(s) | 72, 243, 472, 738 |
| FspBI | CTAG | 1 cut(s) | 513 |
| GlaI | GCGC | 1 cut(s) | 1130 |
| GluI | GCNGC | 4 cut(s) | 72, 243, 472, 738 |
| GsaI | CCCAGC | 1 cut(s) | 718 |
| GsuI | CTGGAG | 5 cut(s) | 258, 456, 629, 750, 963 |
| HaeIII | GGCC | 4 cut(s) | 150, 614, 859, 1109 |
| HapII | CCGG | 3 cut(s) | 153, 986, 1212 |
| HhaI | GCGC | 1 cut(s) | 1131 |
| Hin1II | CATG | 6 cut(s) | 48, 142, 189, 526, 801, 962 |
| Hin6I | GCGC | 1 cut(s) | 1129 |
| HinP1I | GCGC | 1 cut(s) | 1129 |
| HincII | GTYRAC | 1 cut(s) | 813 |
| HindII | GTYRAC | 1 cut(s) | 813 |
| HinfI | GANTC | 3 cut(s) | 41, 461, 841 |
| HpaI | GTTAAC | 1 cut(s) | 813 |
| HpaII | CCGG | 3 cut(s) | 153, 986, 1212 |
| Hpy166II | GTNNAC | 7 cut(s) | 36, 91, 280, 813, 821, 1069, 1152 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 1229 |
| Hpy188III | TCNNGA | 6 cut(s) | 139, 281, 563, 646, 657, 866 |
| Hpy8I | GTNNAC | 7 cut(s) | 36, 91, 280, 813, 821, 1069, 1152 |
| HpyAV | CCTTC | 5 cut(s) | 163, 296, 543, 581, 1153 |
| HpyCH4III | ACNGT | 2 cut(s) | 297, 690 |
| HpyCH4IV | ACGT | 5 cut(s) | 16, 32, 93, 162, 582 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 734, 794, 856, 1137 |
| HpyF3I | CTNAG | 5 cut(s) | 54, 309, 333, 744, 846 |
| HpySE526I | ACGT | 5 cut(s) | 16, 32, 93, 162, 582 |
| Hsp92II | CATG | 6 cut(s) | 48, 142, 189, 526, 801, 962 |
| HspAI | GCGC | 1 cut(s) | 1129 |
| KspAI | GTTAAC | 1 cut(s) | 813 |
| Kzo9I | GATC | 2 cut(s) | 283, 868 |
| LmnI | GCTCC | 6 cut(s) | 50, 172, 725, 774, 958, 988 |
| Lsp1109I | GCAGC | 3 cut(s) | 254, 483, 724 |
| LweI | GCATC | 2 cut(s) | 83, 724 |
| MaeI | CTAG | 1 cut(s) | 513 |
| MaeII | ACGT | 5 cut(s) | 16, 32, 93, 162, 582 |
| MaeIII | GTNAC | 4 cut(s) | 12, 268, 443, 1123 |
| MalI | GATC | 2 cut(s) | 285, 870 |
| MboI | GATC | 2 cut(s) | 283, 868 |
| MboII | GAAGA | 5 cut(s) | 170, 519, 686, 938, 1189 |
| MhlI | GDGCHC | 4 cut(s) | 779, 977, 1029, 1154 |
| MluCI | AATT | 6 cut(s) | 369, 384, 652, 861, 904, 1217 |
| MlyI | GAGTC | 2 cut(s) | 35, 470 |
| MmeI | TCCRAC | 2 cut(s) | 374, 1038 |
| MroXI | GAANNNNTTC | 2 cut(s) | 162, 678 |
| MseI | TTAA | 3 cut(s) | 570, 812, 1086 |
| MspI | CCGG | 3 cut(s) | 153, 986, 1212 |
| MspR9I | CCNGG | 4 cut(s) | 153, 154, 258, 402 |
| MvaI | CCWGG | 2 cut(s) | 258, 402 |
| MvnI | CGCG | 2 cut(s) | 129, 1129 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 734, 794, 856, 1137 |
| NciI | CCSGG | 2 cut(s) | 153, 154 |
| NdeII | GATC | 2 cut(s) | 283, 868 |
| NlaIII | CATG | 6 cut(s) | 48, 142, 189, 526, 801, 962 |
| NlaIV | GGNNCC | 2 cut(s) | 151, 613 |
| NmuCI | GTSAC | 2 cut(s) | 12, 443 |
| NspI | RCATGY | 1 cut(s) | 526 |
| PagI | TCATGA | 1 cut(s) | 138 |
| PaqCI | CACCTGC | 1 cut(s) | 958 |
| PdmI | GAANNNNTTC | 2 cut(s) | 162, 678 |
| PfeI | GAWTC | 1 cut(s) | 841 |
| PkrI | GCNGC | 4 cut(s) | 73, 244, 473, 739 |
| PleI | GAGTC | 2 cut(s) | 35, 469 |
| PmaCI | CACGTG | 2 cut(s) | 17, 33 |
| PmlI | CACGTG | 2 cut(s) | 17, 33 |
| PpsI | GAGTC | 2 cut(s) | 35, 469 |
| Ppu21I | YACGTR | 3 cut(s) | 17, 33, 583 |
| Psp6I | CCWGG | 2 cut(s) | 256, 400 |
| PspCI | CACGTG | 2 cut(s) | 17, 33 |
| PspFI | CCCAGC | 1 cut(s) | 714 |
| PspGI | CCWGG | 2 cut(s) | 256, 400 |
| PspN4I | GGNNCC | 2 cut(s) | 151, 613 |
| PspPI | GGNCC | 7 cut(s) | 36, 124, 149, 612, 857, 1069, 1108 |
| RsaI | GTAC | 3 cut(s) | 294, 317, 822 |
| RsaNI | GTAC | 3 cut(s) | 293, 316, 821 |
| SaqAI | TTAA | 3 cut(s) | 570, 812, 1086 |
| SatI | GCNGC | 4 cut(s) | 72, 243, 472, 738 |
| Sau3AI | GATC | 2 cut(s) | 283, 868 |
| Sau96I | GGNCC | 7 cut(s) | 36, 124, 149, 612, 857, 1069, 1108 |
| SchI | GAGTC | 2 cut(s) | 35, 470 |
| ScrFI | CCNGG | 4 cut(s) | 153, 154, 258, 402 |
| SduI | GDGCHC | 4 cut(s) | 779, 977, 1029, 1154 |
| SfaNI | GCATC | 2 cut(s) | 83, 724 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SinI | GGWCC | 3 cut(s) | 36, 124, 1069 |
| SmaI | CCCGGG | 1 cut(s) | 154 |
| Sse9I | AATT | 6 cut(s) | 369, 384, 652, 861, 904, 1217 |
| SsiI | CCGC | 5 cut(s) | 48, 71, 127, 553, 592 |
| SspI | AATATT | 1 cut(s) | 574 |
| SspMI | CTAG | 1 cut(s) | 513 |
| StyD4I | CCNGG | 4 cut(s) | 151, 152, 256, 400 |
| StyI | CCWWGG | 1 cut(s) | 1072 |
| TaaI | ACNGT | 2 cut(s) | 297, 690 |
| TaiI | ACGT | 5 cut(s) | 19, 35, 96, 165, 585 |
| TaqII | GACCGA | 1 cut(s) | 53 |
| TasI | AATT | 6 cut(s) | 369, 384, 652, 861, 904, 1217 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 1 cut(s) | 841 |
| Tru1I | TTAA | 3 cut(s) | 570, 812, 1086 |
| Tru9I | TTAA | 3 cut(s) | 570, 812, 1086 |
| TscAI | CASTG | 5 cut(s) | 91, 268, 334, 772, 975 |
| TseFI | GTSAC | 2 cut(s) | 12, 443 |
| TseI | GCWGC | 3 cut(s) | 242, 471, 737 |
| Tsp45I | GTSAC | 2 cut(s) | 12, 443 |
| TspDTI | ATGAA | 7 cut(s) | 127, 155, 315, 560, 665, 939, 1053 |
| TspMI | CCCGGG | 1 cut(s) | 152 |
| TspRI | CASTG | 5 cut(s) | 91, 268, 334, 772, 975 |
| VneI | GTGCAC | 1 cut(s) | 1150 |
| VpaK11BI | GGWCC | 3 cut(s) | 36, 124, 1069 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 435 |
| XapI | RAATTY | 2 cut(s) | 652, 1217 |
| XceI | RCATGY | 1 cut(s) | 526 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 653 |
| XmaI | CCCGGG | 1 cut(s) | 152 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XmnI | GAANNNNTTC | 2 cut(s) | 162, 678 |
| XspI | CTAG | 1 cut(s) | 513 |