pycom11g08050

Transcription initiation factor IIA large

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
6177852 .. 6183010
5159 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08050.8

Sequence Viewer

Length: 1230 bp
ATGGTTAGTCTGTCACGTGCAGATTTCGCCACGTGGACCGACTCATGCGGAGCTGAGATTTCAAAAATGGCGGCATCTACGAGCAGTGTCTACGTCAATGTTATTGAGGATGTCATCAACAAGGTCCGCGAGGAGTTCATGAACAACGGCCCCGGGGAAGACGTTCTGAAGGAGCTTCAAGGAACATGGGAAGCGAAAACTATGCAGGCTGGTGTAGTAAATAATCCTATAGAGAGGTCGGCAGCAAAGGGAACACCTGGCAGTGGTGTTACTCCAGTTCACGATCTCAATGTACCGTATGAAGGGACTGAGGAGTACGAAACTCCCACTGCTGAGATACTCTTTCCTCCAACGCCGTTGCAAACCCCAATTCCTGCAACCCCAATTCAAACGCCTCTACCTGGAACTGGGGACAACTTGTATAACATCCCTACTGGAGGTAGTGACTATTCTGCAAACGAGTCTGGTAGCAGCAATGGTGGTGTCAATGCAGAGACGAAAGGTGGAAGACCTAGCCCCTACATGCAACCCCCTTCTACTTGGATGAACCACCGCCCCCCTCTTGATGTTAATATTGCTTACGTGGAAGGGCGGGATGAGGTGGATAGAGGGGCCTCTCATCAACCCCCAACACAGGACTTTCTCCAGATGAATTCTGGAAAGCGAAAGCGTGAAGATTTTCCTGCACAGTATCAAGCTGGTGGTTTTATACCCCAGCAAGATGGAGCTGGAGATGCTGCACCTGAGAAGTTTGAGATTGAGGTCAGTGGAGGGAGCACTTCTATTGCCAGTCGTGCATGGAGTGAGATGTTAACTCGTGTACGAAGTTCAACTCCCAAGATTCCTCAGCTTGATGGGCCAATTCCTGATCCTTATGATGAGCTTTCTACTCCCAATATATACAATTATCAAGGAACTTTCAATGAAGACTACAATGTTGCCAGCACACCTGCTCCCCATGATATACCAGTGAGCACTCCAGCTCCGGTTGTTCAAAATGATGTGGGAGATGATGATGATGATGAGCCCCCTTTGAATGAAAATGATGATGATGAGTTGGATGATGTGGACCAAGGAGATGAGCTTAACACAGCACATTTGGTTTTGGCCCAGTTTGATAAGGTAACGCGCACCAAGAGCAAGTGGAAGTGCACATTGAAGGACGGCATTATGCACATAAACAACAAGGATGTTCTCTTCAATAAGGCGACCGGAGAATTTGACTTCTGA

Protein Analysis

410

Amino Acids

44.42

Weight (kDa)

4.33

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 958
Acc36I ACCTGC 1 cut(s) 958
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 129, 1129
AciI CCGC 5 cut(s) 48, 71, 127, 553, 592
AclWI GGATC 1 cut(s) 863
AcsI RAATTY 2 cut(s) 652, 1217
AcuI CTGAAG 1 cut(s) 188
AcvI CACGTG 2 cut(s) 17, 33
AfaI GTAC 3 cut(s) 294, 317, 822
AfiI CCNNNNNNNGG 6 cut(s) 263, 302, 401, 407, 437, 634
AgsI TTSAA 9 cut(s) 63, 179, 389, 831, 922, 995, 1036, 1159, 1201
AjnI CCWGG 2 cut(s) 256, 400
AluBI AGCT 8 cut(s) 53, 175, 698, 728, 850, 883, 983, 1084
AluI AGCT 8 cut(s) 53, 175, 698, 728, 850, 883, 983, 1084
Alw21I GWGCWC 3 cut(s) 779, 977, 1154
Alw26I GTCTC 1 cut(s) 488
Alw44I GTGCAC 1 cut(s) 1150
AlwI GGATC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 4 cut(s) 148, 612, 857, 1107
ApaLI GTGCAC 1 cut(s) 1150
ApeKI GCWGC 3 cut(s) 242, 471, 737
ApoI RAATTY 2 cut(s) 652, 1217
Asp700I GAANNNNTTC 2 cut(s) 162, 678
AspLEI GCGC 1 cut(s) 1131
AspS9I GGNCC 7 cut(s) 36, 124, 149, 612, 857, 1069, 1108
AsuC2I CCSGG 2 cut(s) 153, 154
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 3 cut(s) 36, 124, 1069
BaeGI GKGCMC 1 cut(s) 1154
BanII GRGCYC 1 cut(s) 1029
BauI CACGAG 1 cut(s) 816
BbrPI CACGTG 2 cut(s) 17, 33
BbsI GAAGAC 3 cut(s) 165, 514, 933
Bbv12I GWGCWC 3 cut(s) 779, 977, 1154
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 3 cut(s) 254, 483, 724
BccI CCATC 2 cut(s) 716, 848
BceAI ACGGC 3 cut(s) 163, 340, 1180
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 2 cut(s) 258, 402
BcnI CCSGG 2 cut(s) 153, 154
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 958
BisI GCNGC 4 cut(s) 72, 243, 472, 738
BlsI GCNGC 4 cut(s) 73, 244, 473, 739
Bme1390I CCNGG 4 cut(s) 153, 154, 258, 402
Bme18I GGWCC 3 cut(s) 36, 124, 1069
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 7 cut(s) 36, 124, 149, 612, 857, 1069, 1108
BmiI GGNNCC 2 cut(s) 151, 613
BmrFI CCNGG 4 cut(s) 153, 154, 258, 402
BmrI ACTGGG 2 cut(s) 417, 1105
BmsI GCATC 2 cut(s) 83, 724
BmuI ACTGGG 2 cut(s) 417, 1105
BpiI GAAGAC 3 cut(s) 165, 514, 933
BpmI CTGGAG 5 cut(s) 258, 456, 629, 750, 963
Bpu10I CCTNAGC 1 cut(s) 846
BpuMI CCSGG 2 cut(s) 153, 154
BsaAI YACGTR 3 cut(s) 17, 33, 583
BsaJI CCNNGG 4 cut(s) 151, 152, 153, 1072
BsaWI WCCGGW 2 cut(s) 985, 1211
BsaXI ACNNNNNCTCC 4 cut(s) 937, 967, 967, 997
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 302, 401, 407, 437, 634
Bse1I ACTGG 6 cut(s) 275, 412, 439, 789, 968, 1111
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 2 cut(s) 258, 402
BseDI CCNNGG 4 cut(s) 151, 152, 153, 1072
BseGI GGATG 6 cut(s) 115, 426, 549, 601, 1066, 1195
BseLI CCNNNNNNNGG 6 cut(s) 263, 302, 401, 407, 437, 634
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 5 cut(s) 45, 300, 324, 735, 860
BseNI ACTGG 6 cut(s) 275, 412, 439, 789, 968, 1111
BseRI GAGGAG 2 cut(s) 146, 326
BseSI GKGCMC 1 cut(s) 1154
BseXI GCAGC 3 cut(s) 254, 483, 724
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 3 cut(s) 39, 669, 723
Bsh1236I CGCG 2 cut(s) 129, 1129
Bsh1285I CGRYCG 1 cut(s) 1212
BshFI GGCC 4 cut(s) 150, 614, 859, 1109
BsiEI CGRYCG 1 cut(s) 1212
BsiHKAI GWGCWC 3 cut(s) 779, 977, 1154
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 3 cut(s) 153, 986, 1212
BslFI GGGAC 2 cut(s) 319, 425
BslI CCNNNNNNNGG 6 cut(s) 263, 302, 401, 407, 437, 634
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 319, 425
BsnI GGCC 4 cut(s) 150, 614, 859, 1109
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 4 cut(s) 779, 977, 1029, 1154
Bsp143I GATC 2 cut(s) 283, 868
BspACI CCGC 5 cut(s) 48, 71, 127, 553, 592
BspANI GGCC 4 cut(s) 150, 614, 859, 1109
BspCNI CTCAG 5 cut(s) 46, 301, 325, 736, 859
BspFNI CGCG 2 cut(s) 129, 1129
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 151, 613
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 1 cut(s) 863
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 6 cut(s) 275, 412, 439, 789, 968, 1111
BssECI CCNNGG 4 cut(s) 151, 152, 153, 1072
BssMI GATC 2 cut(s) 283, 868
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 1 cut(s) 1072
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 258, 402
Bst4CI ACNGT 2 cut(s) 297, 690
Bst6I CTCTTC 1 cut(s) 1202
BstBAI YACGTR 3 cut(s) 17, 33, 583
BstC8I GCNNGC 2 cut(s) 207, 943
BstDEI CTNAG 5 cut(s) 54, 309, 333, 744, 846
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 6 cut(s) 115, 426, 549, 601, 1066, 1195
BstFNI CGCG 2 cut(s) 129, 1129
BstHHI GCGC 1 cut(s) 1131
BstKTI GATC 2 cut(s) 286, 871
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 2 cut(s) 283, 868
BstMCI CGRYCG 1 cut(s) 1212
BstMWI GCNNNNNNNGC 5 cut(s) 26, 734, 794, 856, 1137
BstNI CCWGG 2 cut(s) 258, 402
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 4 cut(s) 151, 152, 256, 400
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 1154
BstUI CGCG 2 cut(s) 129, 1129
BstV1I GCAGC 3 cut(s) 254, 483, 724
BstV2I GAAGAC 3 cut(s) 165, 514, 933
BstXI CCANNNNNNTGG 1 cut(s) 722
BsuRI GGCC 4 cut(s) 150, 614, 859, 1109
BtsCI GGATG 6 cut(s) 115, 426, 549, 601, 1066, 1195
BtsI GCAGTG 3 cut(s) 91, 268, 327
BtsIMutI CAGTG 5 cut(s) 91, 268, 327, 772, 975
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 2 cut(s) 207, 943
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 1131
Cfr13I GGNCC 7 cut(s) 36, 124, 149, 612, 857, 1069, 1108
Cfr9I CCCGGG 1 cut(s) 152
Csp6I GTAC 3 cut(s) 293, 316, 821
CviAII CATG 6 cut(s) 45, 139, 186, 523, 798, 959
CviQI GTAC 3 cut(s) 293, 316, 821
DdeI CTNAG 5 cut(s) 54, 309, 333, 744, 846
DpnI GATC 2 cut(s) 285, 870
DpnII GATC 2 cut(s) 283, 868
Eam1104I CTCTTC 1 cut(s) 1202
EarI CTCTTC 1 cut(s) 1202
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 1 cut(s) 1029
Eco47I GGWCC 3 cut(s) 36, 124, 1069
Eco57I CTGAAG 1 cut(s) 188
Eco72I CACGTG 2 cut(s) 17, 33
Eco88I CYCGRG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 256, 400
EcoT14I CCWWGG 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 1029
ErhI CCWWGG 1 cut(s) 1072
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 6 cut(s) 48, 142, 189, 526, 801, 962
FaqI GGGAC 2 cut(s) 319, 425
FatI CATG 6 cut(s) 44, 138, 185, 522, 797, 958
FauI CCCGC 1 cut(s) 585
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 72, 243, 472, 738
FokI GGATG 6 cut(s) 122, 413, 556, 608, 1073, 1202
FriOI GRGCYC 1 cut(s) 1029
Fsp4HI GCNGC 4 cut(s) 72, 243, 472, 738
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 1130
GluI GCNGC 4 cut(s) 72, 243, 472, 738
GsaI CCCAGC 1 cut(s) 718
GsuI CTGGAG 5 cut(s) 258, 456, 629, 750, 963
HaeIII GGCC 4 cut(s) 150, 614, 859, 1109
HapII CCGG 3 cut(s) 153, 986, 1212
HhaI GCGC 1 cut(s) 1131
Hin1II CATG 6 cut(s) 48, 142, 189, 526, 801, 962
Hin6I GCGC 1 cut(s) 1129
HinP1I GCGC 1 cut(s) 1129
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HinfI GANTC 3 cut(s) 41, 461, 841
HpaI GTTAAC 1 cut(s) 813
HpaII CCGG 3 cut(s) 153, 986, 1212
Hpy166II GTNNAC 7 cut(s) 36, 91, 280, 813, 821, 1069, 1152
Hpy188I TCNGA 2 cut(s) 168, 1229
Hpy188III TCNNGA 6 cut(s) 139, 281, 563, 646, 657, 866
Hpy8I GTNNAC 7 cut(s) 36, 91, 280, 813, 821, 1069, 1152
HpyAV CCTTC 5 cut(s) 163, 296, 543, 581, 1153
HpyCH4III ACNGT 2 cut(s) 297, 690
HpyCH4IV ACGT 5 cut(s) 16, 32, 93, 162, 582
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 734, 794, 856, 1137
HpyF3I CTNAG 5 cut(s) 54, 309, 333, 744, 846
HpySE526I ACGT 5 cut(s) 16, 32, 93, 162, 582
Hsp92II CATG 6 cut(s) 48, 142, 189, 526, 801, 962
HspAI GCGC 1 cut(s) 1129
KspAI GTTAAC 1 cut(s) 813
Kzo9I GATC 2 cut(s) 283, 868
LmnI GCTCC 6 cut(s) 50, 172, 725, 774, 958, 988
Lsp1109I GCAGC 3 cut(s) 254, 483, 724
LweI GCATC 2 cut(s) 83, 724
MaeI CTAG 1 cut(s) 513
MaeII ACGT 5 cut(s) 16, 32, 93, 162, 582
MaeIII GTNAC 4 cut(s) 12, 268, 443, 1123
MalI GATC 2 cut(s) 285, 870
MboI GATC 2 cut(s) 283, 868
MboII GAAGA 5 cut(s) 170, 519, 686, 938, 1189
MhlI GDGCHC 4 cut(s) 779, 977, 1029, 1154
MluCI AATT 6 cut(s) 369, 384, 652, 861, 904, 1217
MlyI GAGTC 2 cut(s) 35, 470
MmeI TCCRAC 2 cut(s) 374, 1038
MroXI GAANNNNTTC 2 cut(s) 162, 678
MseI TTAA 3 cut(s) 570, 812, 1086
MspI CCGG 3 cut(s) 153, 986, 1212
MspR9I CCNGG 4 cut(s) 153, 154, 258, 402
MvaI CCWGG 2 cut(s) 258, 402
MvnI CGCG 2 cut(s) 129, 1129
MwoI GCNNNNNNNGC 5 cut(s) 26, 734, 794, 856, 1137
NciI CCSGG 2 cut(s) 153, 154
NdeII GATC 2 cut(s) 283, 868
NlaIII CATG 6 cut(s) 48, 142, 189, 526, 801, 962
NlaIV GGNNCC 2 cut(s) 151, 613
NmuCI GTSAC 2 cut(s) 12, 443
NspI RCATGY 1 cut(s) 526
PagI TCATGA 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 958
PdmI GAANNNNTTC 2 cut(s) 162, 678
PfeI GAWTC 1 cut(s) 841
PkrI GCNGC 4 cut(s) 73, 244, 473, 739
PleI GAGTC 2 cut(s) 35, 469
PmaCI CACGTG 2 cut(s) 17, 33
PmlI CACGTG 2 cut(s) 17, 33
PpsI GAGTC 2 cut(s) 35, 469
Ppu21I YACGTR 3 cut(s) 17, 33, 583
Psp6I CCWGG 2 cut(s) 256, 400
PspCI CACGTG 2 cut(s) 17, 33
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 2 cut(s) 256, 400
PspN4I GGNNCC 2 cut(s) 151, 613
PspPI GGNCC 7 cut(s) 36, 124, 149, 612, 857, 1069, 1108
RsaI GTAC 3 cut(s) 294, 317, 822
RsaNI GTAC 3 cut(s) 293, 316, 821
SaqAI TTAA 3 cut(s) 570, 812, 1086
SatI GCNGC 4 cut(s) 72, 243, 472, 738
Sau3AI GATC 2 cut(s) 283, 868
Sau96I GGNCC 7 cut(s) 36, 124, 149, 612, 857, 1069, 1108
SchI GAGTC 2 cut(s) 35, 470
ScrFI CCNGG 4 cut(s) 153, 154, 258, 402
SduI GDGCHC 4 cut(s) 779, 977, 1029, 1154
SfaNI GCATC 2 cut(s) 83, 724
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 36, 124, 1069
SmaI CCCGGG 1 cut(s) 154
Sse9I AATT 6 cut(s) 369, 384, 652, 861, 904, 1217
SsiI CCGC 5 cut(s) 48, 71, 127, 553, 592
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 4 cut(s) 151, 152, 256, 400
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 2 cut(s) 297, 690
TaiI ACGT 5 cut(s) 19, 35, 96, 165, 585
TaqII GACCGA 1 cut(s) 53
TasI AATT 6 cut(s) 369, 384, 652, 861, 904, 1217
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 841
Tru1I TTAA 3 cut(s) 570, 812, 1086
Tru9I TTAA 3 cut(s) 570, 812, 1086
TscAI CASTG 5 cut(s) 91, 268, 334, 772, 975
TseFI GTSAC 2 cut(s) 12, 443
TseI GCWGC 3 cut(s) 242, 471, 737
Tsp45I GTSAC 2 cut(s) 12, 443
TspDTI ATGAA 7 cut(s) 127, 155, 315, 560, 665, 939, 1053
TspMI CCCGGG 1 cut(s) 152
TspRI CASTG 5 cut(s) 91, 268, 334, 772, 975
VneI GTGCAC 1 cut(s) 1150
VpaK11BI GGWCC 3 cut(s) 36, 124, 1069
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 2 cut(s) 652, 1217
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmaI CCCGGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 2 cut(s) 162, 678
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.