FvH4_3g36940

Transcription initiation factor IIA large

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
31620323 .. 31625297
4975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36940.t1

Sequence Viewer

Length: 1134 bp
ATGGCTTCGACGAGCGCTGTCTACATCAGTGTCATCGAGGACGTCATCAACAAGGTCAAGGAAGAGTTCGCCAATGGCGCCGGTGAAGACGTCCTCAAGGAGCTTCAAGGAACTTGGGAGGCTAAGATGATGCAAGCTGGTGTTGTAAATGCTCCGATTGAGAGGTCTGCGGCGGCCAAGCCCACACCTGGAGTTACTCCAGTTCATGATCTCAATGTACCGTATGAAGGGACTGAGGAGTATGAGACTCCTACTGCTGATTTACTCTTCCCTCCAACCCCGGCACCAACTCCAATCCCGCAAACTCCTTTGCAACCACAAACTCCAGGCCAAACACCAGGAACCGCGGAGACTTATAATATTCCTACTGGGGCTAGTGATGATTCTGCTGGTGGCAATGCAGGTGCAAATACAGATTTGAAACCTGGAAGACCTAGCCCATACATGCAACCTCCTTCTCCTTGGATGACCCAGCGGCCCCCACTTGATGTTAATATCGCTTATGTGGAAGGGCGGGATGAGGTGGATAGGGGAGCCTCTCATCAACCCCCAACACAGGACTTCTTCACAATGTCTGCTGGAAAGCGAAAACGTGAAGAAATTCCCCCACAATATCAAGCTGGTGGGTTTATTCCCCAGCAAGATGGAGCCGCAGATGCTATACCCGAGTTTTTTGAGATTGAGATTTGTGGAGGGAGCACTTCTATTGGACGTGCGTATGGTAAGATGTCTGCTTGTACACCCAAGATTCCTCAACTTGATGGGCCAATACCTGATCCCTATGAGGAGCTTTCTACTCCCAATATATACAATTATCAAGGAGCTTTCAATGAAGACTACAACATTGCCAACACACCAGCTCCCAATGATGTGCCAGTCACTCCAGCTCCTGTTGTGAATGATGTTGGAGATGATGATGAGGACGATGAGCCCCCATTGAATGAAAATGACGATGATGATCAGGATGATGTGGACCAAGGAGAGGAACTGAACACACAGCATTTGGTATTGGCTCAGTTTGATAAGGTGACACGCACCAAAAGCAGGTGGAAGTGCACACTGAAGGATGGCATTATGCACATAAACAACAAGGATGTCCTCTTTAATAAGGCAACGGGAGAATTTGACTTCTGA

Protein Analysis

378

Amino Acids

40.89

Weight (kDa)

4.2

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIA PF03153 7 - 132 2.5e-15 Transcription factor IIA, alpha/beta subunit
TFIIA PF03153 244 - 376 1.6e-31 Transcription factor IIA, alpha/beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AarI CACCTGC 2 cut(s) 392, 1035
AatII GACGTC 2 cut(s) 45, 93
Acc36I ACCTGC 2 cut(s) 392, 1035
AccB1I GGYRCC 2 cut(s) 77, 283
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 347
AciI CCGC 8 cut(s) 170, 173, 299, 345, 347, 475, 514, 651
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 2 cut(s) 600, 1121
AcuI CTGAAG 1 cut(s) 1082
AcyI GRCGYC 3 cut(s) 42, 78, 90
AfaI GTAC 2 cut(s) 219, 739
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 5 cut(s) 188, 227, 556, 982, 1044
AgsI TTSAA 4 cut(s) 107, 421, 829, 940
AjiI CACGTC 1 cut(s) 713
AjnI CCWGG 4 cut(s) 187, 325, 337, 424
AluBI AGCT 7 cut(s) 103, 137, 620, 790, 824, 860, 887
AluI AGCT 7 cut(s) 103, 137, 620, 790, 824, 860, 887
Alw21I GWGCWC 2 cut(s) 701, 1058
Alw26I GTCTC 2 cut(s) 239, 344
Alw44I GTGCAC 1 cut(s) 1054
AlwI GGATC 1 cut(s) 770
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 1 cut(s) 665
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 4 cut(s) 174, 328, 476, 764
ApaLI GTGCAC 1 cut(s) 1054
ApoI RAATTY 2 cut(s) 600, 1121
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 2 cut(s) 17, 80
AspS9I GGNCC 3 cut(s) 477, 764, 973
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 95, 1039
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 1 cut(s) 973
BaeGI GKGCMC 1 cut(s) 1058
BanI GGYRCC 2 cut(s) 77, 283
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 3 cut(s) 93, 436, 840
Bbv12I GWGCWC 2 cut(s) 701, 1058
BccI CCATC 3 cut(s) 638, 755, 1061
BciT130I CCWGG 4 cut(s) 189, 327, 339, 426
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 239, 344
BfaI CTAG 2 cut(s) 375, 435
BfoI RGCGCY 2 cut(s) 18, 81
BfuAI ACCTGC 2 cut(s) 392, 1035
BisI GCNGC 4 cut(s) 171, 174, 476, 651
BlsI GCNGC 4 cut(s) 172, 175, 477, 652
Bme1390I CCNGG 5 cut(s) 189, 281, 327, 339, 426
Bme18I GGWCC 1 cut(s) 973
BmeT110I CYCGRG 1 cut(s) 665
BmgBI CACGTC 1 cut(s) 713
BmgT120I GGNCC 3 cut(s) 477, 764, 973
BmiI GGNNCC 6 cut(s) 79, 285, 343, 479, 535, 649
BmrFI CCNGG 5 cut(s) 189, 281, 327, 339, 426
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 120, 646
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 3 cut(s) 93, 436, 840
BpmI CTGGAG 4 cut(s) 183, 210, 309, 867
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 3 cut(s) 42, 78, 90
BsaJI CCNNGG 4 cut(s) 279, 345, 461, 976
BsaXI ACNNNNNCTCC 4 cut(s) 844, 871, 874, 901
Bsc4I CCNNNNNNNGG 5 cut(s) 188, 227, 556, 982, 1044
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 3 cut(s) 200, 373, 875
Bse3DI GCAATG 2 cut(s) 403, 843
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 4 cut(s) 189, 327, 339, 426
BseDI CCNNGG 4 cut(s) 279, 345, 461, 976
BseGI GGATG 5 cut(s) 471, 523, 970, 1072, 1099
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 5 cut(s) 188, 227, 556, 982, 1044
BseMI GCAATG 2 cut(s) 403, 843
BseMII CTCAG 2 cut(s) 225, 1028
BseNI ACTGG 3 cut(s) 200, 373, 875
BseRI GAGGAG 2 cut(s) 251, 800
BseSI GKGCMC 1 cut(s) 1058
BseYI CCCAGC 2 cut(s) 471, 636
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 4 cut(s) 176, 330, 478, 766
BshNI GGYRCC 2 cut(s) 77, 283
BsiHKAI GWGCWC 2 cut(s) 701, 1058
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 2 cut(s) 81, 281
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 5 cut(s) 188, 227, 556, 982, 1044
BsmAI GTCTC 2 cut(s) 239, 344
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 4 cut(s) 176, 330, 478, 766
BsoBI CYCGRG 1 cut(s) 665
Bsp1286I GDGCHC 3 cut(s) 701, 933, 1058
Bsp1407I TGTACA 1 cut(s) 737
Bsp143I GATC 3 cut(s) 208, 775, 958
BspACI CCGC 8 cut(s) 170, 173, 299, 345, 347, 475, 514, 651
BspANI GGCC 4 cut(s) 176, 330, 478, 766
BspCNI CTCAG 2 cut(s) 226, 1027
BspFNI CGCG 1 cut(s) 347
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 6 cut(s) 79, 285, 343, 479, 535, 649
BspMI ACCTGC 2 cut(s) 392, 1035
BspPI GGATC 1 cut(s) 770
BspT107I GGYRCC 2 cut(s) 77, 283
BsrDI GCAATG 2 cut(s) 403, 843
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 737
BsrI ACTGG 3 cut(s) 200, 373, 875
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 4 cut(s) 279, 345, 461, 976
BssMI GATC 3 cut(s) 208, 775, 958
BssNI GRCGYC 3 cut(s) 42, 78, 90
BssT1I CCWWGG 2 cut(s) 461, 976
Bst2UI CCWGG 4 cut(s) 189, 327, 339, 426
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 57, 272
BstACI GRCGYC 3 cut(s) 42, 78, 90
BstAUI TGTACA 1 cut(s) 737
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 123, 234, 1014
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 5 cut(s) 471, 523, 970, 1072, 1099
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 2 cut(s) 18, 81
BstHHI GCGC 2 cut(s) 17, 80
BstKTI GATC 3 cut(s) 211, 778, 961
BstMAI GTCTC 2 cut(s) 239, 344
BstMBI GATC 3 cut(s) 208, 775, 958
BstMWI GCNNNNNNNGC 3 cut(s) 77, 656, 1041
BstNI CCWGG 4 cut(s) 189, 327, 339, 426
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 5 cut(s) 187, 279, 325, 337, 424
BstSLI GKGCMC 1 cut(s) 1058
BstUI CGCG 1 cut(s) 347
BstV2I GAAGAC 3 cut(s) 93, 436, 840
BstXI CCANNNNNNTGG 1 cut(s) 644
BsuRI GGCC 4 cut(s) 176, 330, 478, 766
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 713
BtsCI GGATG 5 cut(s) 471, 523, 970, 1072, 1099
BtsIMutI CAGTG 2 cut(s) 34, 1058
BveI ACCTGC 2 cut(s) 392, 1035
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 17, 80
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 477, 764, 973
Cfr42I CCGCGG 1 cut(s) 348
Csp6I GTAC 2 cut(s) 218, 738
CviAII CATG 2 cut(s) 206, 445
CviQI GTAC 2 cut(s) 218, 738
DdeI CTNAG 3 cut(s) 123, 234, 1014
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 210, 777, 960
DpnII GATC 3 cut(s) 208, 775, 958
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 57, 272
EarI CTCTTC 2 cut(s) 57, 272
Eco130I CCWWGG 2 cut(s) 461, 976
Eco24I GRGCYC 1 cut(s) 933
Eco47I GGWCC 1 cut(s) 973
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 1082
Eco88I CYCGRG 1 cut(s) 665
EcoRII CCWGG 4 cut(s) 187, 325, 337, 424
EcoT14I CCWWGG 2 cut(s) 461, 976
EcoT38I GRGCYC 1 cut(s) 933
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 461, 976
FaeI CATG 2 cut(s) 209, 448
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 205, 444
FauI CCCGC 2 cut(s) 306, 507
FbaI TGATCA 1 cut(s) 958
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 171, 174, 476, 651
FokI GGATG 5 cut(s) 478, 530, 977, 1079, 1106
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 4 cut(s) 171, 174, 476, 651
FspBI CTAG 2 cut(s) 375, 435
GlaI GCGC 2 cut(s) 16, 79
GluI GCNGC 4 cut(s) 171, 174, 476, 651
GsaI CCCAGC 2 cut(s) 475, 640
GsuI CTGGAG 4 cut(s) 183, 210, 309, 867
HaeII RGCGCY 2 cut(s) 18, 81
HaeIII GGCC 4 cut(s) 176, 330, 478, 766
HapII CCGG 2 cut(s) 81, 281
HhaI GCGC 2 cut(s) 17, 80
Hin1I GRCGYC 3 cut(s) 42, 78, 90
Hin1II CATG 2 cut(s) 209, 448
Hin6I GCGC 2 cut(s) 15, 78
HinP1I GCGC 2 cut(s) 15, 78
HinfI GANTC 3 cut(s) 247, 383, 748
HpaII CCGG 2 cut(s) 81, 281
HphI GGTGA 2 cut(s) 95, 1039
Hpy166II GTNNAC 4 cut(s) 22, 740, 973, 1056
Hpy188I TCNGA 2 cut(s) 156, 1133
Hpy188III TCNNGA 2 cut(s) 206, 962
Hpy8I GTNNAC 4 cut(s) 22, 740, 973, 1056
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 221, 465, 503, 1057
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4IV ACGT 4 cut(s) 42, 90, 592, 712
HpyCH4V TGCA 7 cut(s) 133, 313, 401, 407, 448, 1056, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 656, 1041
HpyF3I CTNAG 3 cut(s) 123, 234, 1014
HpySE526I ACGT 4 cut(s) 42, 90, 592, 712
Hsp92I GRCGYC 3 cut(s) 42, 78, 90
Hsp92II CATG 2 cut(s) 209, 448
HspAI GCGC 2 cut(s) 15, 78
KasI GGCGCC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 958
KspI CCGCGG 1 cut(s) 348
Kzo9I GATC 3 cut(s) 208, 775, 958
LmnI GCTCC 9 cut(s) 100, 157, 533, 647, 696, 787, 821, 865, 892
LweI GCATC 2 cut(s) 120, 646
MaeI CTAG 2 cut(s) 375, 435
MaeII ACGT 4 cut(s) 42, 90, 592, 712
MaeIII GTNAC 3 cut(s) 193, 877, 1027
MalI GATC 3 cut(s) 210, 777, 960
MboI GATC 3 cut(s) 208, 775, 958
MboII GAAGA 7 cut(s) 74, 98, 259, 441, 556, 608, 845
MhlI GDGCHC 3 cut(s) 701, 933, 1058
MluCI AATT 3 cut(s) 600, 811, 1121
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 299, 886
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 2 cut(s) 492, 1104
MspA1I CMGCKG 2 cut(s) 347, 475
MspI CCGG 2 cut(s) 81, 281
MspR9I CCNGG 5 cut(s) 189, 281, 327, 339, 426
MvaI CCWGG 4 cut(s) 189, 327, 339, 426
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 3 cut(s) 77, 656, 1041
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 1 cut(s) 281
NdeII GATC 3 cut(s) 208, 775, 958
NlaIII CATG 2 cut(s) 209, 448
NlaIV GGNNCC 6 cut(s) 79, 285, 343, 479, 535, 649
NmuCI GTSAC 2 cut(s) 877, 1027
NspI RCATGY 1 cut(s) 448
PagI TCATGA 1 cut(s) 205
PaqCI CACCTGC 2 cut(s) 392, 1035
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 383, 748
PkrI GCNGC 4 cut(s) 172, 175, 477, 652
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 4 cut(s) 187, 325, 337, 424
PspFI CCCAGC 2 cut(s) 471, 636
PspGI CCWGG 4 cut(s) 187, 325, 337, 424
PspN4I GGNNCC 6 cut(s) 79, 285, 343, 479, 535, 649
PspPI GGNCC 3 cut(s) 477, 764, 973
PstNI CAGNNNCTG 1 cut(s) 890
RsaI GTAC 2 cut(s) 219, 739
RsaNI GTAC 2 cut(s) 218, 738
SacII CCGCGG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 492, 1104
SatI GCNGC 4 cut(s) 171, 174, 476, 651
Sau3AI GATC 3 cut(s) 208, 775, 958
Sau96I GGNCC 3 cut(s) 477, 764, 973
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 5 cut(s) 189, 281, 327, 339, 426
SduI GDGCHC 3 cut(s) 701, 933, 1058
SfaNI GCATC 2 cut(s) 120, 646
SfoI GGCGCC 1 cut(s) 79
Sfr303I CCGCGG 1 cut(s) 348
SgrAI CRCCGGYG 1 cut(s) 80
SgrBI CCGCGG 1 cut(s) 348
SinI GGWCC 1 cut(s) 973
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 600, 811, 1121
SsiI CCGC 8 cut(s) 170, 173, 299, 345, 347, 475, 514, 651
SspDI GGCGCC 1 cut(s) 77
SspI AATATT 1 cut(s) 361
SspMI CTAG 2 cut(s) 375, 435
StyD4I CCNGG 5 cut(s) 187, 279, 325, 337, 424
StyI CCWWGG 2 cut(s) 461, 976
TaaI ACNGT 1 cut(s) 222
TaiI ACGT 4 cut(s) 45, 93, 595, 715
TaqI TCGA 2 cut(s) 8, 36
TasI AATT 3 cut(s) 600, 811, 1121
TatI WGTACW 1 cut(s) 737
TauI GCSGC 4 cut(s) 173, 176, 478, 653
TfiI GAWTC 2 cut(s) 383, 748
Tru1I TTAA 2 cut(s) 492, 1104
Tru9I TTAA 2 cut(s) 492, 1104
TscAI CASTG 2 cut(s) 34, 1065
TseFI GTSAC 2 cut(s) 877, 1027
Tsp45I GTSAC 2 cut(s) 877, 1027
TspDTI ATGAA 4 cut(s) 194, 240, 846, 957
TspRI CASTG 2 cut(s) 34, 1065
VneI GTGCAC 1 cut(s) 1054
VpaK11BI GGWCC 1 cut(s) 973
XapI RAATTY 2 cut(s) 600, 1121
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 2 cut(s) 375, 435
ZraI GACGTC 2 cut(s) 43, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.