Transcription initiation factor IIA large
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07470 AT1G07470 AT1G07480 AT1G07480 AT1G07480 |
| fragaria_vesca | FvH4_3g36940 |
| malus_domestica | MD03G1086200.v1.1 MD11G1094800.v1.1 |
| prunus_persica | Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 |
| pyrus_communis | pycom03g06830 pycom11g08050 |
| rosa_chinensis | RchiOBHm_Chr5g0066351 |
| rosa_laevigata | RLG00000035853 |
| rosa_multiflora | Rmu_ssc0000249.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00014790 |
| rosa_rugosa | Rorug05G0377500 |
| rosa_samantha | Rh5AG436000 Rh5BG452400 Rh5CG474700 Rh5DG467400 |
| rosa_wichuraiana | Rw5G040840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 357 |
| AarI | CACCTGC | 2 cut(s) | 392, 1035 |
| AatII | GACGTC | 2 cut(s) | 45, 93 |
| Acc36I | ACCTGC | 2 cut(s) | 392, 1035 |
| AccB1I | GGYRCC | 2 cut(s) | 77, 283 |
| AccI | GTMKAC | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 347 |
| AciI | CCGC | 8 cut(s) | 170, 173, 299, 345, 347, 475, 514, 651 |
| AclWI | GGATC | 1 cut(s) | 770 |
| AcoI | YGGCCR | 1 cut(s) | 174 |
| AcsI | RAATTY | 2 cut(s) | 600, 1121 |
| AcuI | CTGAAG | 1 cut(s) | 1082 |
| AcyI | GRCGYC | 3 cut(s) | 42, 78, 90 |
| AfaI | GTAC | 2 cut(s) | 219, 739 |
| AfeI | AGCGCT | 1 cut(s) | 16 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 188, 227, 556, 982, 1044 |
| AgsI | TTSAA | 4 cut(s) | 107, 421, 829, 940 |
| AjiI | CACGTC | 1 cut(s) | 713 |
| AjnI | CCWGG | 4 cut(s) | 187, 325, 337, 424 |
| AluBI | AGCT | 7 cut(s) | 103, 137, 620, 790, 824, 860, 887 |
| AluI | AGCT | 7 cut(s) | 103, 137, 620, 790, 824, 860, 887 |
| Alw21I | GWGCWC | 2 cut(s) | 701, 1058 |
| Alw26I | GTCTC | 2 cut(s) | 239, 344 |
| Alw44I | GTGCAC | 1 cut(s) | 1054 |
| AlwI | GGATC | 1 cut(s) | 770 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 890 |
| Ama87I | CYCGRG | 1 cut(s) | 665 |
| Aor51HI | AGCGCT | 1 cut(s) | 16 |
| AoxI | GGCC | 4 cut(s) | 174, 328, 476, 764 |
| ApaLI | GTGCAC | 1 cut(s) | 1054 |
| ApoI | RAATTY | 2 cut(s) | 600, 1121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 600 |
| AspLEI | GCGC | 2 cut(s) | 17, 80 |
| AspS9I | GGNCC | 3 cut(s) | 477, 764, 973 |
| AsuC2I | CCSGG | 1 cut(s) | 281 |
| AsuHPI | GGTGA | 2 cut(s) | 95, 1039 |
| AvaI | CYCGRG | 1 cut(s) | 665 |
| AvaII | GGWCC | 1 cut(s) | 973 |
| BaeGI | GKGCMC | 1 cut(s) | 1058 |
| BanI | GGYRCC | 2 cut(s) | 77, 283 |
| BanII | GRGCYC | 1 cut(s) | 933 |
| BbsI | GAAGAC | 3 cut(s) | 93, 436, 840 |
| Bbv12I | GWGCWC | 2 cut(s) | 701, 1058 |
| BccI | CCATC | 3 cut(s) | 638, 755, 1061 |
| BciT130I | CCWGG | 4 cut(s) | 189, 327, 339, 426 |
| BclI | TGATCA | 1 cut(s) | 958 |
| BcnI | CCSGG | 1 cut(s) | 281 |
| BcoDI | GTCTC | 2 cut(s) | 239, 344 |
| BfaI | CTAG | 2 cut(s) | 375, 435 |
| BfoI | RGCGCY | 2 cut(s) | 18, 81 |
| BfuAI | ACCTGC | 2 cut(s) | 392, 1035 |
| BisI | GCNGC | 4 cut(s) | 171, 174, 476, 651 |
| BlsI | GCNGC | 4 cut(s) | 172, 175, 477, 652 |
| Bme1390I | CCNGG | 5 cut(s) | 189, 281, 327, 339, 426 |
| Bme18I | GGWCC | 1 cut(s) | 973 |
| BmeT110I | CYCGRG | 1 cut(s) | 665 |
| BmgBI | CACGTC | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 3 cut(s) | 477, 764, 973 |
| BmiI | GGNNCC | 6 cut(s) | 79, 285, 343, 479, 535, 649 |
| BmrFI | CCNGG | 5 cut(s) | 189, 281, 327, 339, 426 |
| BmrI | ACTGGG | 1 cut(s) | 378 |
| BmsI | GCATC | 2 cut(s) | 120, 646 |
| BmuI | ACTGGG | 1 cut(s) | 378 |
| BpiI | GAAGAC | 3 cut(s) | 93, 436, 840 |
| BpmI | CTGGAG | 4 cut(s) | 183, 210, 309, 867 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BpuMI | CCSGG | 1 cut(s) | 281 |
| BsaBI | GATNNNNATC | 1 cut(s) | 957 |
| BsaHI | GRCGYC | 3 cut(s) | 42, 78, 90 |
| BsaJI | CCNNGG | 4 cut(s) | 279, 345, 461, 976 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 844, 871, 874, 901 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 188, 227, 556, 982, 1044 |
| Bse118I | RCCGGY | 1 cut(s) | 80 |
| Bse1I | ACTGG | 3 cut(s) | 200, 373, 875 |
| Bse3DI | GCAATG | 2 cut(s) | 403, 843 |
| Bse8I | GATNNNNATC | 1 cut(s) | 957 |
| BseBI | CCWGG | 4 cut(s) | 189, 327, 339, 426 |
| BseDI | CCNNGG | 4 cut(s) | 279, 345, 461, 976 |
| BseGI | GGATG | 5 cut(s) | 471, 523, 970, 1072, 1099 |
| BseJI | GATNNNNATC | 1 cut(s) | 957 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 188, 227, 556, 982, 1044 |
| BseMI | GCAATG | 2 cut(s) | 403, 843 |
| BseMII | CTCAG | 2 cut(s) | 225, 1028 |
| BseNI | ACTGG | 3 cut(s) | 200, 373, 875 |
| BseRI | GAGGAG | 2 cut(s) | 251, 800 |
| BseSI | GKGCMC | 1 cut(s) | 1058 |
| BseYI | CCCAGC | 2 cut(s) | 471, 636 |
| Bsh1236I | CGCG | 1 cut(s) | 347 |
| BshFI | GGCC | 4 cut(s) | 176, 330, 478, 766 |
| BshNI | GGYRCC | 2 cut(s) | 77, 283 |
| BsiHKAI | GWGCWC | 2 cut(s) | 701, 1058 |
| BsiHKCI | CYCGRG | 1 cut(s) | 665 |
| BsiSI | CCGG | 2 cut(s) | 81, 281 |
| BslFI | GGGAC | 1 cut(s) | 244 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 188, 227, 556, 982, 1044 |
| BsmAI | GTCTC | 2 cut(s) | 239, 344 |
| BsmFI | GGGAC | 1 cut(s) | 244 |
| BsnI | GGCC | 4 cut(s) | 176, 330, 478, 766 |
| BsoBI | CYCGRG | 1 cut(s) | 665 |
| Bsp1286I | GDGCHC | 3 cut(s) | 701, 933, 1058 |
| Bsp1407I | TGTACA | 1 cut(s) | 737 |
| Bsp143I | GATC | 3 cut(s) | 208, 775, 958 |
| BspACI | CCGC | 8 cut(s) | 170, 173, 299, 345, 347, 475, 514, 651 |
| BspANI | GGCC | 4 cut(s) | 176, 330, 478, 766 |
| BspCNI | CTCAG | 2 cut(s) | 226, 1027 |
| BspFNI | CGCG | 1 cut(s) | 347 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 6 cut(s) | 79, 285, 343, 479, 535, 649 |
| BspMI | ACCTGC | 2 cut(s) | 392, 1035 |
| BspPI | GGATC | 1 cut(s) | 770 |
| BspT107I | GGYRCC | 2 cut(s) | 77, 283 |
| BsrDI | GCAATG | 2 cut(s) | 403, 843 |
| BsrFI | RCCGGY | 1 cut(s) | 80 |
| BsrGI | TGTACA | 1 cut(s) | 737 |
| BsrI | ACTGG | 3 cut(s) | 200, 373, 875 |
| BssAI | RCCGGY | 1 cut(s) | 80 |
| BssECI | CCNNGG | 4 cut(s) | 279, 345, 461, 976 |
| BssMI | GATC | 3 cut(s) | 208, 775, 958 |
| BssNI | GRCGYC | 3 cut(s) | 42, 78, 90 |
| BssT1I | CCWWGG | 2 cut(s) | 461, 976 |
| Bst2UI | CCWGG | 4 cut(s) | 189, 327, 339, 426 |
| Bst4CI | ACNGT | 1 cut(s) | 222 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 272 |
| BstACI | GRCGYC | 3 cut(s) | 42, 78, 90 |
| BstAUI | TGTACA | 1 cut(s) | 737 |
| BstC8I | GCNNGC | 1 cut(s) | 135 |
| BstDEI | CTNAG | 3 cut(s) | 123, 234, 1014 |
| BstDSI | CCRYGG | 1 cut(s) | 345 |
| BstF5I | GGATG | 5 cut(s) | 471, 523, 970, 1072, 1099 |
| BstFNI | CGCG | 1 cut(s) | 347 |
| BstH2I | RGCGCY | 2 cut(s) | 18, 81 |
| BstHHI | GCGC | 2 cut(s) | 17, 80 |
| BstKTI | GATC | 3 cut(s) | 211, 778, 961 |
| BstMAI | GTCTC | 2 cut(s) | 239, 344 |
| BstMBI | GATC | 3 cut(s) | 208, 775, 958 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 77, 656, 1041 |
| BstNI | CCWGG | 4 cut(s) | 189, 327, 339, 426 |
| BstNSI | RCATGY | 1 cut(s) | 448 |
| BstSCI | CCNGG | 5 cut(s) | 187, 279, 325, 337, 424 |
| BstSLI | GKGCMC | 1 cut(s) | 1058 |
| BstUI | CGCG | 1 cut(s) | 347 |
| BstV2I | GAAGAC | 3 cut(s) | 93, 436, 840 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 644 |
| BsuRI | GGCC | 4 cut(s) | 176, 330, 478, 766 |
| BtgI | CCRYGG | 1 cut(s) | 345 |
| BtrI | CACGTC | 1 cut(s) | 713 |
| BtsCI | GGATG | 5 cut(s) | 471, 523, 970, 1072, 1099 |
| BtsIMutI | CAGTG | 2 cut(s) | 34, 1058 |
| BveI | ACCTGC | 2 cut(s) | 392, 1035 |
| Cac8I | GCNNGC | 1 cut(s) | 135 |
| CaiI | CAGNNNCTG | 1 cut(s) | 890 |
| CciI | TCATGA | 1 cut(s) | 205 |
| CfoI | GCGC | 2 cut(s) | 17, 80 |
| Cfr10I | RCCGGY | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 3 cut(s) | 477, 764, 973 |
| Cfr42I | CCGCGG | 1 cut(s) | 348 |
| Csp6I | GTAC | 2 cut(s) | 218, 738 |
| CviAII | CATG | 2 cut(s) | 206, 445 |
| CviQI | GTAC | 2 cut(s) | 218, 738 |
| DdeI | CTNAG | 3 cut(s) | 123, 234, 1014 |
| DinI | GGCGCC | 1 cut(s) | 79 |
| DpnI | GATC | 3 cut(s) | 210, 777, 960 |
| DpnII | GATC | 3 cut(s) | 208, 775, 958 |
| EaeI | YGGCCR | 1 cut(s) | 174 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 272 |
| EarI | CTCTTC | 2 cut(s) | 57, 272 |
| Eco130I | CCWWGG | 2 cut(s) | 461, 976 |
| Eco24I | GRGCYC | 1 cut(s) | 933 |
| Eco47I | GGWCC | 1 cut(s) | 973 |
| Eco47III | AGCGCT | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 1082 |
| Eco88I | CYCGRG | 1 cut(s) | 665 |
| EcoRII | CCWGG | 4 cut(s) | 187, 325, 337, 424 |
| EcoT14I | CCWWGG | 2 cut(s) | 461, 976 |
| EcoT38I | GRGCYC | 1 cut(s) | 933 |
| EgeI | GGCGCC | 1 cut(s) | 79 |
| EheI | GGCGCC | 1 cut(s) | 79 |
| ErhI | CCWWGG | 2 cut(s) | 461, 976 |
| FaeI | CATG | 2 cut(s) | 209, 448 |
| FaqI | GGGAC | 1 cut(s) | 244 |
| FatI | CATG | 2 cut(s) | 205, 444 |
| FauI | CCCGC | 2 cut(s) | 306, 507 |
| FbaI | TGATCA | 1 cut(s) | 958 |
| FblI | GTMKAC | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 4 cut(s) | 171, 174, 476, 651 |
| FokI | GGATG | 5 cut(s) | 478, 530, 977, 1079, 1106 |
| FriOI | GRGCYC | 1 cut(s) | 933 |
| Fsp4HI | GCNGC | 4 cut(s) | 171, 174, 476, 651 |
| FspBI | CTAG | 2 cut(s) | 375, 435 |
| GlaI | GCGC | 2 cut(s) | 16, 79 |
| GluI | GCNGC | 4 cut(s) | 171, 174, 476, 651 |
| GsaI | CCCAGC | 2 cut(s) | 475, 640 |
| GsuI | CTGGAG | 4 cut(s) | 183, 210, 309, 867 |
| HaeII | RGCGCY | 2 cut(s) | 18, 81 |
| HaeIII | GGCC | 4 cut(s) | 176, 330, 478, 766 |
| HapII | CCGG | 2 cut(s) | 81, 281 |
| HhaI | GCGC | 2 cut(s) | 17, 80 |
| Hin1I | GRCGYC | 3 cut(s) | 42, 78, 90 |
| Hin1II | CATG | 2 cut(s) | 209, 448 |
| Hin6I | GCGC | 2 cut(s) | 15, 78 |
| HinP1I | GCGC | 2 cut(s) | 15, 78 |
| HinfI | GANTC | 3 cut(s) | 247, 383, 748 |
| HpaII | CCGG | 2 cut(s) | 81, 281 |
| HphI | GGTGA | 2 cut(s) | 95, 1039 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 740, 973, 1056 |
| Hpy188I | TCNGA | 2 cut(s) | 156, 1133 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 962 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 740, 973, 1056 |
| Hpy99I | CGWCG | 1 cut(s) | 13 |
| HpyAV | CCTTC | 4 cut(s) | 221, 465, 503, 1057 |
| HpyCH4III | ACNGT | 1 cut(s) | 222 |
| HpyCH4IV | ACGT | 4 cut(s) | 42, 90, 592, 712 |
| HpyCH4V | TGCA | 7 cut(s) | 133, 313, 401, 407, 448, 1056, 1078 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 77, 656, 1041 |
| HpyF3I | CTNAG | 3 cut(s) | 123, 234, 1014 |
| HpySE526I | ACGT | 4 cut(s) | 42, 90, 592, 712 |
| Hsp92I | GRCGYC | 3 cut(s) | 42, 78, 90 |
| Hsp92II | CATG | 2 cut(s) | 209, 448 |
| HspAI | GCGC | 2 cut(s) | 15, 78 |
| KasI | GGCGCC | 1 cut(s) | 77 |
| Ksp22I | TGATCA | 1 cut(s) | 958 |
| KspI | CCGCGG | 1 cut(s) | 348 |
| Kzo9I | GATC | 3 cut(s) | 208, 775, 958 |
| LmnI | GCTCC | 9 cut(s) | 100, 157, 533, 647, 696, 787, 821, 865, 892 |
| LweI | GCATC | 2 cut(s) | 120, 646 |
| MaeI | CTAG | 2 cut(s) | 375, 435 |
| MaeII | ACGT | 4 cut(s) | 42, 90, 592, 712 |
| MaeIII | GTNAC | 3 cut(s) | 193, 877, 1027 |
| MalI | GATC | 3 cut(s) | 210, 777, 960 |
| MboI | GATC | 3 cut(s) | 208, 775, 958 |
| MboII | GAAGA | 7 cut(s) | 74, 98, 259, 441, 556, 608, 845 |
| MhlI | GDGCHC | 3 cut(s) | 701, 933, 1058 |
| MluCI | AATT | 3 cut(s) | 600, 811, 1121 |
| Mly113I | GGCGCC | 1 cut(s) | 78 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MmeI | TCCRAC | 2 cut(s) | 299, 886 |
| MroXI | GAANNNNTTC | 1 cut(s) | 600 |
| MseI | TTAA | 2 cut(s) | 492, 1104 |
| MspA1I | CMGCKG | 2 cut(s) | 347, 475 |
| MspI | CCGG | 2 cut(s) | 81, 281 |
| MspR9I | CCNGG | 5 cut(s) | 189, 281, 327, 339, 426 |
| MvaI | CCWGG | 4 cut(s) | 189, 327, 339, 426 |
| MvnI | CGCG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 77, 656, 1041 |
| NarI | GGCGCC | 1 cut(s) | 78 |
| NciI | CCSGG | 1 cut(s) | 281 |
| NdeII | GATC | 3 cut(s) | 208, 775, 958 |
| NlaIII | CATG | 2 cut(s) | 209, 448 |
| NlaIV | GGNNCC | 6 cut(s) | 79, 285, 343, 479, 535, 649 |
| NmuCI | GTSAC | 2 cut(s) | 877, 1027 |
| NspI | RCATGY | 1 cut(s) | 448 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PaqCI | CACCTGC | 2 cut(s) | 392, 1035 |
| PdmI | GAANNNNTTC | 1 cut(s) | 600 |
| PfeI | GAWTC | 2 cut(s) | 383, 748 |
| PkrI | GCNGC | 4 cut(s) | 172, 175, 477, 652 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PluTI | GGCGCC | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| PsiI | TTATAA | 1 cut(s) | 357 |
| Psp6I | CCWGG | 4 cut(s) | 187, 325, 337, 424 |
| PspFI | CCCAGC | 2 cut(s) | 471, 636 |
| PspGI | CCWGG | 4 cut(s) | 187, 325, 337, 424 |
| PspN4I | GGNNCC | 6 cut(s) | 79, 285, 343, 479, 535, 649 |
| PspPI | GGNCC | 3 cut(s) | 477, 764, 973 |
| PstNI | CAGNNNCTG | 1 cut(s) | 890 |
| RsaI | GTAC | 2 cut(s) | 219, 739 |
| RsaNI | GTAC | 2 cut(s) | 218, 738 |
| SacII | CCGCGG | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 492, 1104 |
| SatI | GCNGC | 4 cut(s) | 171, 174, 476, 651 |
| Sau3AI | GATC | 3 cut(s) | 208, 775, 958 |
| Sau96I | GGNCC | 3 cut(s) | 477, 764, 973 |
| SchI | GAGTC | 1 cut(s) | 241 |
| ScrFI | CCNGG | 5 cut(s) | 189, 281, 327, 339, 426 |
| SduI | GDGCHC | 3 cut(s) | 701, 933, 1058 |
| SfaNI | GCATC | 2 cut(s) | 120, 646 |
| SfoI | GGCGCC | 1 cut(s) | 79 |
| Sfr303I | CCGCGG | 1 cut(s) | 348 |
| SgrAI | CRCCGGYG | 1 cut(s) | 80 |
| SgrBI | CCGCGG | 1 cut(s) | 348 |
| SinI | GGWCC | 1 cut(s) | 973 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 3 cut(s) | 600, 811, 1121 |
| SsiI | CCGC | 8 cut(s) | 170, 173, 299, 345, 347, 475, 514, 651 |
| SspDI | GGCGCC | 1 cut(s) | 77 |
| SspI | AATATT | 1 cut(s) | 361 |
| SspMI | CTAG | 2 cut(s) | 375, 435 |
| StyD4I | CCNGG | 5 cut(s) | 187, 279, 325, 337, 424 |
| StyI | CCWWGG | 2 cut(s) | 461, 976 |
| TaaI | ACNGT | 1 cut(s) | 222 |
| TaiI | ACGT | 4 cut(s) | 45, 93, 595, 715 |
| TaqI | TCGA | 2 cut(s) | 8, 36 |
| TasI | AATT | 3 cut(s) | 600, 811, 1121 |
| TatI | WGTACW | 1 cut(s) | 737 |
| TauI | GCSGC | 4 cut(s) | 173, 176, 478, 653 |
| TfiI | GAWTC | 2 cut(s) | 383, 748 |
| Tru1I | TTAA | 2 cut(s) | 492, 1104 |
| Tru9I | TTAA | 2 cut(s) | 492, 1104 |
| TscAI | CASTG | 2 cut(s) | 34, 1065 |
| TseFI | GTSAC | 2 cut(s) | 877, 1027 |
| Tsp45I | GTSAC | 2 cut(s) | 877, 1027 |
| TspDTI | ATGAA | 4 cut(s) | 194, 240, 846, 957 |
| TspRI | CASTG | 2 cut(s) | 34, 1065 |
| VneI | GTGCAC | 1 cut(s) | 1054 |
| VpaK11BI | GGWCC | 1 cut(s) | 973 |
| XapI | RAATTY | 2 cut(s) | 600, 1121 |
| XceI | RCATGY | 1 cut(s) | 448 |
| XmiI | GTMKAC | 1 cut(s) | 21 |
| XmnI | GAANNNNTTC | 1 cut(s) | 600 |
| XspI | CTAG | 2 cut(s) | 375, 435 |
| ZraI | GACGTC | 2 cut(s) | 43, 91 |