Transcription initiation factor IIA large
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07470 AT1G07470 AT1G07480 AT1G07480 AT1G07480 |
| fragaria_vesca | FvH4_3g36940 |
| malus_domestica | MD03G1086200.v1.1 MD11G1094800.v1.1 |
| prunus_persica | Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 |
| pyrus_communis | pycom03g06830 pycom11g08050 |
| rosa_chinensis | RchiOBHm_Chr5g0066351 |
| rosa_laevigata | RLG00000035853 |
| rosa_multiflora | Rmu_ssc0000249.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00014790 |
| rosa_rugosa | Rorug05G0377500 |
| rosa_samantha | Rh5AG436000 Rh5BG452400 Rh5CG474700 Rh5DG467400 |
| rosa_wichuraiana | Rw5G040840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 898 |
| Acc36I | ACCTGC | 1 cut(s) | 898 |
| AccI | GTMKAC | 1 cut(s) | 24 |
| AccII | CGCG | 2 cut(s) | 63, 1069 |
| AciI | CCGC | 4 cut(s) | 5, 61, 487, 526 |
| AclWI | GGATC | 1 cut(s) | 803 |
| AcsI | RAATTY | 3 cut(s) | 68, 586, 1157 |
| AcuI | CTGAAG | 1 cut(s) | 122 |
| AfaI | GTAC | 3 cut(s) | 228, 251, 762 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 197, 236, 335, 341, 371, 568 |
| AgsI | TTSAA | 8 cut(s) | 113, 323, 771, 862, 935, 976, 1099, 1141 |
| AjnI | CCWGG | 2 cut(s) | 190, 334 |
| AluBI | AGCT | 6 cut(s) | 109, 632, 662, 823, 923, 1024 |
| AluI | AGCT | 6 cut(s) | 109, 632, 662, 823, 923, 1024 |
| Alw21I | GWGCWC | 3 cut(s) | 719, 917, 1094 |
| Alw26I | GTCTC | 1 cut(s) | 422 |
| Alw44I | GTGCAC | 1 cut(s) | 1090 |
| AlwI | GGATC | 1 cut(s) | 803 |
| Ama87I | CYCGRG | 1 cut(s) | 86 |
| AoxI | GGCC | 4 cut(s) | 6, 82, 546, 1047 |
| ApaLI | GTGCAC | 1 cut(s) | 1090 |
| ApeKI | GCWGC | 2 cut(s) | 176, 671 |
| ApoI | RAATTY | 3 cut(s) | 68, 586, 1157 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 96, 612 |
| AspLEI | GCGC | 2 cut(s) | 452, 1071 |
| AspS9I | GGNCC | 7 cut(s) | 58, 83, 240, 546, 797, 1009, 1048 |
| AsuC2I | CCSGG | 2 cut(s) | 87, 88 |
| AvaI | CYCGRG | 1 cut(s) | 86 |
| AvaII | GGWCC | 4 cut(s) | 58, 240, 797, 1009 |
| BaeGI | GKGCMC | 1 cut(s) | 1094 |
| BanII | GRGCYC | 1 cut(s) | 969 |
| BauI | CACGAG | 2 cut(s) | 13, 756 |
| BbsI | GAAGAC | 3 cut(s) | 99, 448, 873 |
| Bbv12I | GWGCWC | 3 cut(s) | 719, 917, 1094 |
| BbvI | GCAGC | 2 cut(s) | 188, 658 |
| BccI | CCATC | 2 cut(s) | 650, 788 |
| BceAI | ACGGC | 3 cut(s) | 97, 274, 1120 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 118, 152 |
| BciT130I | CCWGG | 2 cut(s) | 192, 336 |
| BcnI | CCSGG | 2 cut(s) | 87, 88 |
| BcoDI | GTCTC | 1 cut(s) | 422 |
| BfaI | CTAG | 1 cut(s) | 447 |
| BfmI | CTRYAG | 1 cut(s) | 162 |
| BfoI | RGCGCY | 1 cut(s) | 453 |
| BfuAI | ACCTGC | 1 cut(s) | 898 |
| BisI | GCNGC | 3 cut(s) | 6, 177, 672 |
| BlsI | GCNGC | 3 cut(s) | 7, 178, 673 |
| Bme1390I | CCNGG | 4 cut(s) | 87, 88, 192, 336 |
| Bme18I | GGWCC | 4 cut(s) | 58, 240, 797, 1009 |
| BmeT110I | CYCGRG | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 7 cut(s) | 58, 83, 240, 546, 797, 1009, 1048 |
| BmiI | GGNNCC | 3 cut(s) | 85, 241, 547 |
| BmrFI | CCNGG | 4 cut(s) | 87, 88, 192, 336 |
| BmrI | ACTGGG | 2 cut(s) | 351, 1045 |
| BmsI | GCATC | 1 cut(s) | 658 |
| BmuI | ACTGGG | 2 cut(s) | 351, 1045 |
| BpiI | GAAGAC | 3 cut(s) | 99, 448, 873 |
| BpmI | CTGGAG | 5 cut(s) | 192, 390, 563, 684, 903 |
| BpuMI | CCSGG | 2 cut(s) | 87, 88 |
| BsaAI | YACGTR | 1 cut(s) | 517 |
| BsaJI | CCNNGG | 5 cut(s) | 85, 86, 87, 243, 1012 |
| BsaWI | WCCGGW | 3 cut(s) | 398, 925, 1151 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 877, 907, 907, 937 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 197, 236, 335, 341, 371, 568 |
| Bse1I | ACTGG | 5 cut(s) | 209, 346, 373, 729, 1051 |
| BseBI | CCWGG | 2 cut(s) | 192, 336 |
| BseDI | CCNNGG | 5 cut(s) | 85, 86, 87, 243, 1012 |
| BseGI | GGATG | 5 cut(s) | 49, 360, 483, 535, 1006 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 197, 236, 335, 341, 371, 568 |
| BseMII | CTCAG | 2 cut(s) | 258, 669 |
| BseNI | ACTGG | 5 cut(s) | 209, 346, 373, 729, 1051 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BseSI | GKGCMC | 1 cut(s) | 1094 |
| BseXI | GCAGC | 2 cut(s) | 188, 658 |
| BseYI | CCCAGC | 1 cut(s) | 648 |
| BsgI | GTGCAG | 2 cut(s) | 603, 657 |
| Bsh1236I | CGCG | 2 cut(s) | 63, 1069 |
| BshFI | GGCC | 4 cut(s) | 8, 84, 548, 1049 |
| BsiHKAI | GWGCWC | 3 cut(s) | 719, 917, 1094 |
| BsiHKCI | CYCGRG | 1 cut(s) | 86 |
| BsiSI | CCGG | 4 cut(s) | 87, 399, 926, 1152 |
| BslFI | GGGAC | 2 cut(s) | 253, 359 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 197, 236, 335, 341, 371, 568 |
| BsmAI | GTCTC | 1 cut(s) | 422 |
| BsmBI | CGTCTC | 1 cut(s) | 422 |
| BsmFI | GGGAC | 2 cut(s) | 253, 359 |
| BsnI | GGCC | 4 cut(s) | 8, 84, 548, 1049 |
| BsoBI | CYCGRG | 1 cut(s) | 86 |
| Bsp1286I | GDGCHC | 4 cut(s) | 719, 917, 969, 1094 |
| Bsp143I | GATC | 2 cut(s) | 217, 808 |
| BspACI | CCGC | 4 cut(s) | 5, 61, 487, 526 |
| BspANI | GGCC | 4 cut(s) | 8, 84, 548, 1049 |
| BspCNI | CTCAG | 2 cut(s) | 259, 670 |
| BspFNI | CGCG | 2 cut(s) | 63, 1069 |
| BspHI | TCATGA | 1 cut(s) | 72 |
| BspLI | GGNNCC | 3 cut(s) | 85, 241, 547 |
| BspMI | ACCTGC | 1 cut(s) | 898 |
| BspPI | GGATC | 1 cut(s) | 803 |
| BsrI | ACTGG | 5 cut(s) | 209, 346, 373, 729, 1051 |
| BssECI | CCNNGG | 5 cut(s) | 85, 86, 87, 243, 1012 |
| BssMI | GATC | 2 cut(s) | 217, 808 |
| BssSI | CACGAG | 2 cut(s) | 13, 756 |
| BssT1I | CCWWGG | 1 cut(s) | 1012 |
| Bst2BI | CACGAG | 2 cut(s) | 13, 756 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 336 |
| Bst4CI | ACNGT | 2 cut(s) | 231, 624 |
| Bst6I | CTCTTC | 2 cut(s) | 281, 1142 |
| BstBAI | YACGTR | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 2 cut(s) | 141, 883 |
| BstDEI | CTNAG | 2 cut(s) | 267, 678 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 369 |
| BstF5I | GGATG | 5 cut(s) | 49, 360, 483, 535, 1006 |
| BstFNI | CGCG | 2 cut(s) | 63, 1069 |
| BstH2I | RGCGCY | 1 cut(s) | 453 |
| BstHHI | GCGC | 2 cut(s) | 452, 1071 |
| BstKTI | GATC | 2 cut(s) | 220, 811 |
| BstMAI | GTCTC | 1 cut(s) | 422 |
| BstMBI | GATC | 2 cut(s) | 217, 808 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 668, 734, 1077 |
| BstNI | CCWGG | 2 cut(s) | 192, 336 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstSCI | CCNGG | 4 cut(s) | 85, 86, 190, 334 |
| BstSFI | CTRYAG | 1 cut(s) | 162 |
| BstSLI | GKGCMC | 1 cut(s) | 1094 |
| BstUI | CGCG | 2 cut(s) | 63, 1069 |
| BstV1I | GCAGC | 2 cut(s) | 188, 658 |
| BstV2I | GAAGAC | 3 cut(s) | 99, 448, 873 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 656 |
| BsuRI | GGCC | 4 cut(s) | 8, 84, 548, 1049 |
| BtsCI | GGATG | 5 cut(s) | 49, 360, 483, 535, 1006 |
| BtsI | GCAGTG | 3 cut(s) | 25, 202, 261 |
| BtsIMutI | CAGTG | 4 cut(s) | 25, 202, 261, 712 |
| BveI | ACCTGC | 1 cut(s) | 898 |
| Cac8I | GCNNGC | 2 cut(s) | 141, 883 |
| CciI | TCATGA | 1 cut(s) | 72 |
| CfoI | GCGC | 2 cut(s) | 452, 1071 |
| Cfr13I | GGNCC | 7 cut(s) | 58, 83, 240, 546, 797, 1009, 1048 |
| Cfr9I | CCCGGG | 1 cut(s) | 86 |
| Csp6I | GTAC | 3 cut(s) | 227, 250, 761 |
| CviAII | CATG | 5 cut(s) | 73, 136, 457, 738, 899 |
| CviQI | GTAC | 3 cut(s) | 227, 250, 761 |
| DdeI | CTNAG | 2 cut(s) | 267, 678 |
| DpnI | GATC | 2 cut(s) | 219, 810 |
| DpnII | GATC | 2 cut(s) | 217, 808 |
| Eam1104I | CTCTTC | 2 cut(s) | 281, 1142 |
| EarI | CTCTTC | 2 cut(s) | 281, 1142 |
| Eco130I | CCWWGG | 1 cut(s) | 1012 |
| Eco24I | GRGCYC | 1 cut(s) | 969 |
| Eco47I | GGWCC | 4 cut(s) | 58, 240, 797, 1009 |
| Eco57I | CTGAAG | 1 cut(s) | 122 |
| Eco88I | CYCGRG | 1 cut(s) | 86 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 369 |
| EcoO109I | RGGNCCY | 1 cut(s) | 546 |
| EcoRI | GAATTC | 2 cut(s) | 68, 586 |
| EcoRII | CCWGG | 2 cut(s) | 190, 334 |
| EcoT14I | CCWWGG | 1 cut(s) | 1012 |
| EcoT38I | GRGCYC | 1 cut(s) | 969 |
| ErhI | CCWWGG | 1 cut(s) | 1012 |
| Esp3I | CGTCTC | 1 cut(s) | 422 |
| FaeI | CATG | 5 cut(s) | 76, 139, 460, 741, 902 |
| FaqI | GGGAC | 2 cut(s) | 253, 359 |
| FatI | CATG | 5 cut(s) | 72, 135, 456, 737, 898 |
| FauI | CCCGC | 1 cut(s) | 519 |
| FauNDI | CATATG | 1 cut(s) | 700 |
| FblI | GTMKAC | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 177, 672 |
| FokI | GGATG | 5 cut(s) | 56, 347, 490, 542, 1013 |
| FriOI | GRGCYC | 1 cut(s) | 969 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 177, 672 |
| FspBI | CTAG | 1 cut(s) | 447 |
| GlaI | GCGC | 2 cut(s) | 451, 1070 |
| GluI | GCNGC | 3 cut(s) | 6, 177, 672 |
| GsaI | CCCAGC | 1 cut(s) | 652 |
| GsuI | CTGGAG | 5 cut(s) | 192, 390, 563, 684, 903 |
| HaeII | RGCGCY | 1 cut(s) | 453 |
| HaeIII | GGCC | 4 cut(s) | 8, 84, 548, 1049 |
| HapII | CCGG | 4 cut(s) | 87, 399, 926, 1152 |
| HhaI | GCGC | 2 cut(s) | 452, 1071 |
| Hin1II | CATG | 5 cut(s) | 76, 139, 460, 741, 902 |
| Hin6I | GCGC | 2 cut(s) | 450, 1069 |
| HinP1I | GCGC | 2 cut(s) | 450, 1069 |
| HincII | GTYRAC | 1 cut(s) | 753 |
| HindII | GTYRAC | 1 cut(s) | 753 |
| HinfI | GANTC | 3 cut(s) | 395, 695, 781 |
| HpaI | GTTAAC | 1 cut(s) | 753 |
| HpaII | CCGG | 4 cut(s) | 87, 399, 926, 1152 |
| Hpy166II | GTNNAC | 6 cut(s) | 25, 214, 753, 761, 1009, 1092 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 1169 |
| Hpy188III | TCNNGA | 5 cut(s) | 73, 215, 497, 580, 806 |
| Hpy8I | GTNNAC | 6 cut(s) | 25, 214, 753, 761, 1009, 1092 |
| Hpy99I | CGWCG | 1 cut(s) | 962 |
| HpyAV | CCTTC | 5 cut(s) | 97, 230, 477, 515, 1093 |
| HpyCH4III | ACNGT | 2 cut(s) | 231, 624 |
| HpyCH4IV | ACGT | 3 cut(s) | 27, 96, 516 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 668, 734, 1077 |
| HpyF3I | CTNAG | 2 cut(s) | 267, 678 |
| HpySE526I | ACGT | 3 cut(s) | 27, 96, 516 |
| Hsp92II | CATG | 5 cut(s) | 76, 139, 460, 741, 902 |
| HspAI | GCGC | 2 cut(s) | 450, 1069 |
| KspAI | GTTAAC | 1 cut(s) | 753 |
| Kzo9I | GATC | 2 cut(s) | 217, 808 |
| LmnI | GCTCC | 5 cut(s) | 106, 659, 714, 898, 928 |
| Lsp1109I | GCAGC | 2 cut(s) | 188, 658 |
| LweI | GCATC | 1 cut(s) | 658 |
| MaeI | CTAG | 1 cut(s) | 447 |
| MaeII | ACGT | 3 cut(s) | 27, 96, 516 |
| MaeIII | GTNAC | 3 cut(s) | 202, 377, 1063 |
| MalI | GATC | 2 cut(s) | 219, 810 |
| MboI | GATC | 2 cut(s) | 217, 808 |
| MboII | GAAGA | 6 cut(s) | 104, 268, 453, 620, 878, 1129 |
| MhlI | GDGCHC | 4 cut(s) | 719, 917, 969, 1094 |
| MluCI | AATT | 7 cut(s) | 68, 303, 318, 586, 801, 844, 1157 |
| MlyI | GAGTC | 2 cut(s) | 404, 704 |
| MmeI | TCCRAC | 2 cut(s) | 308, 978 |
| MroXI | GAANNNNTTC | 2 cut(s) | 96, 612 |
| MseI | TTAA | 3 cut(s) | 504, 752, 1026 |
| MspI | CCGG | 4 cut(s) | 87, 399, 926, 1152 |
| MspR9I | CCNGG | 4 cut(s) | 87, 88, 192, 336 |
| MvaI | CCWGG | 2 cut(s) | 192, 336 |
| MvnI | CGCG | 2 cut(s) | 63, 1069 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 668, 734, 1077 |
| NciI | CCSGG | 2 cut(s) | 87, 88 |
| NdeI | CATATG | 1 cut(s) | 700 |
| NdeII | GATC | 2 cut(s) | 217, 808 |
| NlaIII | CATG | 5 cut(s) | 76, 139, 460, 741, 902 |
| NlaIV | GGNNCC | 3 cut(s) | 85, 241, 547 |
| NmuCI | GTSAC | 1 cut(s) | 377 |
| NspI | RCATGY | 1 cut(s) | 460 |
| PagI | TCATGA | 1 cut(s) | 72 |
| PaqCI | CACCTGC | 1 cut(s) | 898 |
| PdmI | GAANNNNTTC | 2 cut(s) | 96, 612 |
| PfeI | GAWTC | 1 cut(s) | 781 |
| PkrI | GCNGC | 3 cut(s) | 7, 178, 673 |
| PleI | GAGTC | 2 cut(s) | 403, 703 |
| PpsI | GAGTC | 2 cut(s) | 403, 703 |
| Ppu21I | YACGTR | 1 cut(s) | 517 |
| Psp6I | CCWGG | 2 cut(s) | 190, 334 |
| PspFI | CCCAGC | 1 cut(s) | 648 |
| PspGI | CCWGG | 2 cut(s) | 190, 334 |
| PspN4I | GGNNCC | 3 cut(s) | 85, 241, 547 |
| PspPI | GGNCC | 7 cut(s) | 58, 83, 240, 546, 797, 1009, 1048 |
| RsaI | GTAC | 3 cut(s) | 228, 251, 762 |
| RsaNI | GTAC | 3 cut(s) | 227, 250, 761 |
| SaqAI | TTAA | 3 cut(s) | 504, 752, 1026 |
| SatI | GCNGC | 3 cut(s) | 6, 177, 672 |
| Sau3AI | GATC | 2 cut(s) | 217, 808 |
| Sau96I | GGNCC | 7 cut(s) | 58, 83, 240, 546, 797, 1009, 1048 |
| SchI | GAGTC | 2 cut(s) | 404, 704 |
| ScrFI | CCNGG | 4 cut(s) | 87, 88, 192, 336 |
| SduI | GDGCHC | 4 cut(s) | 719, 917, 969, 1094 |
| SfaNI | GCATC | 1 cut(s) | 658 |
| SfcI | CTRYAG | 1 cut(s) | 162 |
| SinI | GGWCC | 4 cut(s) | 58, 240, 797, 1009 |
| SmaI | CCCGGG | 1 cut(s) | 88 |
| Sse9I | AATT | 7 cut(s) | 68, 303, 318, 586, 801, 844, 1157 |
| SsiI | CCGC | 4 cut(s) | 5, 61, 487, 526 |
| SspI | AATATT | 1 cut(s) | 508 |
| SspMI | CTAG | 1 cut(s) | 447 |
| StyD4I | CCNGG | 4 cut(s) | 85, 86, 190, 334 |
| StyI | CCWWGG | 1 cut(s) | 1012 |
| TaaI | ACNGT | 2 cut(s) | 231, 624 |
| TaiI | ACGT | 3 cut(s) | 30, 99, 519 |
| TaqII | GACCGA | 1 cut(s) | 257 |
| TasI | AATT | 7 cut(s) | 68, 303, 318, 586, 801, 844, 1157 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 1 cut(s) | 781 |
| Tru1I | TTAA | 3 cut(s) | 504, 752, 1026 |
| Tru9I | TTAA | 3 cut(s) | 504, 752, 1026 |
| TscAI | CASTG | 4 cut(s) | 25, 202, 268, 712 |
| TseFI | GTSAC | 1 cut(s) | 377 |
| TseI | GCWGC | 2 cut(s) | 176, 671 |
| Tsp45I | GTSAC | 1 cut(s) | 377 |
| TspDTI | ATGAA | 7 cut(s) | 61, 89, 249, 494, 599, 879, 993 |
| TspMI | CCCGGG | 1 cut(s) | 86 |
| TspRI | CASTG | 4 cut(s) | 25, 202, 268, 712 |
| VneI | GTGCAC | 1 cut(s) | 1090 |
| VpaK11BI | GGWCC | 4 cut(s) | 58, 240, 797, 1009 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 369 |
| XapI | RAATTY | 3 cut(s) | 68, 586, 1157 |
| XceI | RCATGY | 1 cut(s) | 460 |
| XmaI | CCCGGG | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 24 |
| XmnI | GAANNNNTTC | 2 cut(s) | 96, 612 |
| XspI | CTAG | 1 cut(s) | 447 |