AT1G07590

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012552
Physical Location & Seq
Reverse (-)
2336477 .. 2339391
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07590.1

Sequence Viewer

Length: 1605 bp
ATGAGATCCATTATTGCTCTCATGAGGCAACGAGAATATTTCGTTCAGGCAATTCGTCGAACAACTTGCGTGGCCTCACCTGCGTTGAATCAAACTAACTTCCAAGCTTCGAGCTTTCTCACTACCCTAATATCTTCGAAGAAATCTCCGGAAGAGACATGTATCGGATCGGAGGAAGAAGAAGAGGAGCCCAACAAGTGTTTGTCTTTGAGAATCGAGAAGCTTCCGAAGGGCGTAACTGTTGGGTCTGCTTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCCATTAATCGATTGAGGAAACTCGGACGAAACAAACGTGCCCTTGAGTTGATGGAGTGGATAATCAGGGAAAGACCTTACCGTCTTGGTGAGCTAGAGTACTCTTACTTGCTCGAATTTACAGTCAAACTTCATGGCGTCTCGCAAGGAGAAAAGCTATTTACCCGTGTCCCTCAAGAGTTTCAGAACGAGCTTCTTTACAACAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGGCTTGCGCTAGAGTATATGAAGAAGATGAGAGAACTCGGTTACCGTACTTCCCATTTGGTCTACAACCGTCTTATAATTCGCAACTCTGCTCCCGGACGAAGAAAGCTAATAGCAAAAGACCTTGCGCTCATGAAAGCTGACAAGGCGACTCCTCATGTCTCAACGTATCATATCTTGATGAAGCTTGAGGCTAATGAACATAACATCGATGGGGTGCTGAAGGCTTTTGATGGTATGAAGAAAGCGGGAGTTGAGCCAAATGAGGTGTCTTACTGTATATTGGCTATGGCACATGCTGTTGCGAGATTGTATACAGTTGCAGAAGCCTATACCGAGGAAATAGAAAAATCTATCACAGGGGATAATTGGTCGACCTTGGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAAAGAGCTAGCGAGAACGTGGAATGTCATAAGAGGGTTTCATCATGTTAGATCCAAGAGTTACTTACTGGCAACCGAAGCGTTTGCTCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTGGTTAGAGATGAAAAACGTAAAAGGACTTAAAGAAACTGAGCAATTCAACTCTCTGCTCTCGGTATACTGCAAGGACGGTTTGATAGAGAAGGCAATTGGTGTATTCCGCGAGATGACAGGAAACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTTGGATGTGCTAAAGCCAAACTGATGAAGGAAGCTCTCAAAAACATTGAGATGGGTTTGAATCTAAAGACGAGCAAAAGCATAGGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATAGAGTGTTTTGCAGAGAAAGGTGATGTAGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTATAATAGGTATGCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTATGACCCTAATCTGTTCAAGAGGATGGTTCTAGGTGGAGCTAGGCCTGATGCTGAGTCATACAGTTTGTTGAAACTTGTCGAACAATATAAGCCCTGA

Protein Analysis

534

Amino Acids

60.85

Weight (kDa)

9.14

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 234 - 277 2.9e-07 PPR repeat family
PPR_2 PF13041 378 - 422 3.2e-11 PPR repeat family
PPR PF01535 378 - 406 1.6e-07 PPR repeat
PPR_1 PF12854 378 - 402 3.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012552)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07590
fragaria_vesca FvH4_3g36060 FvH4_3g36060
malus_domestica MD11G1109000.v1.1
prunus_persica Prupe.6G077700_v2.0.a1
pyrus_communis pycom11g09010
rosa_chinensis RchiOBHm_Chr5g0064501
rosa_laevigata RLG00000035729
rosa_multiflora Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002
rosa_roxburghii Rroxscaffold_1G00016520
rosa_rugosa Rorug05G0365500 Rorug05G0365600
rosa_samantha Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300
rosa_wichuraiana Rw5G039820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 1 cut(s) 88
AasI GACNNNNNNGTC 2 cut(s) 387, 539
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 1076
AccI GTMKAC 4 cut(s) 609, 860, 920, 1152
AccII CGCG 1 cut(s) 1197
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 3 cut(s) 794, 1076, 1195
AclWI GGATC 2 cut(s) 175, 1011
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 788
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 3 cut(s) 407, 595, 1469
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 7 cut(s) 88, 1135, 1312, 1427, 1483, 1525, 1579
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 4 cut(s) 149, 451, 712, 1352
AlwI GGATC 2 cut(s) 175, 1011
Ama87I CYCGRG 1 cut(s) 1053
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 2 cut(s) 72, 1550
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 4 cut(s) 414, 446, 800, 832
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 2 cut(s) 556, 676
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 5 cut(s) 69, 281, 407, 1409, 1444
AsuII TTCGAA 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 1053
BaeGI GKGCMC 1 cut(s) 349
BanII GRGCYC 2 cut(s) 192, 1086
Bbv12I GWGCWC 1 cut(s) 1086
BccI CCATC 7 cut(s) 259, 266, 352, 752, 773, 1297, 1525
BceAI ACGGC 1 cut(s) 1333
BcgI CGANNNNNNTGC 4 cut(s) 48, 82, 1031, 1065
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 4 cut(s) 149, 451, 712, 1352
BfaI CTAG 5 cut(s) 401, 557, 974, 1538, 1548
BfuAI ACCTGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 1053
BmiI GGNNCC 2 cut(s) 189, 1064
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 1546
BmtI GCTAGC 1 cut(s) 977
BpmI CTGGAG 1 cut(s) 1376
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 371, 465, 755
BpuMI CCSGG 1 cut(s) 642
Bsa29I ATCGAT 3 cut(s) 316, 756, 1370
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 4 cut(s) 535, 882, 924, 1349
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 281, 1038
Bse8I GATNNNNATC 1 cut(s) 300
BseAI TCCGGA 1 cut(s) 148
BseCI ATCGAT 3 cut(s) 316, 756, 1370
BseDI CCNNGG 4 cut(s) 535, 882, 924, 1349
BseGI GGATG 3 cut(s) 270, 1262, 1536
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 3 cut(s) 1116, 1425, 1551
BseNI ACTGG 2 cut(s) 281, 1038
BseRI GAGGAG 2 cut(s) 200, 690
BseSI GKGCMC 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 1197
BshFI GGCC 2 cut(s) 74, 1552
BshVI ATCGAT 3 cut(s) 316, 756, 1370
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 1053
BsiSI CCGG 2 cut(s) 149, 642
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 4 cut(s) 149, 451, 712, 1352
BsmBI CGTCTC 2 cut(s) 451, 1352
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 1444
BsnI GGCC 2 cut(s) 74, 1552
BsoBI CYCGRG 1 cut(s) 1053
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 3 cut(s) 192, 349, 1086
Bsp13I TCCGGA 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 1467
Bsp143I GATC 4 cut(s) 5, 167, 1016, 1371
BspACI CCGC 3 cut(s) 794, 1076, 1195
BspANI GGCC 2 cut(s) 74, 1552
BspCNI CTCAG 3 cut(s) 1117, 1424, 1552
BspDI ATCGAT 3 cut(s) 316, 756, 1370
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 1 cut(s) 1197
BspHI TCATGA 2 cut(s) 21, 678
BspLI GGNNCC 2 cut(s) 189, 1064
BspMI ACCTGC 1 cut(s) 88
BspOI GCTAGC 1 cut(s) 977
BspPI GGATC 2 cut(s) 175, 1011
BspQI GCTCTTC 1 cut(s) 1074
BspT104I TTCGAA 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 1076
BsrGI TGTACA 1 cut(s) 1467
BsrI ACTGG 2 cut(s) 281, 1038
BssECI CCNNGG 4 cut(s) 535, 882, 924, 1349
BssMI GATC 4 cut(s) 5, 167, 1016, 1371
BssNAI GTATAC 2 cut(s) 861, 1153
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 535, 924
Bst1107I GTATAC 2 cut(s) 861, 1153
Bst6I CTCTTC 4 cut(s) 147, 177, 1074, 1422
BstACI GRCGYC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 1467
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 552, 975
BstDEI CTNAG 3 cut(s) 1125, 1411, 1560
BstDSI CCRYGG 1 cut(s) 1349
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 3 cut(s) 270, 1262, 1536
BstFNI CGCG 1 cut(s) 1197
BstHHI GCGC 2 cut(s) 556, 676
BstKTI GATC 4 cut(s) 8, 170, 1019, 1374
BstMAI GTCTC 4 cut(s) 149, 451, 712, 1352
BstMBI GATC 4 cut(s) 5, 167, 1016, 1371
BstMWI GCNNNNNNNGC 4 cut(s) 80, 692, 1043, 1338
BstNSI RCATGY 2 cut(s) 162, 845
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 349
BstUI CGCG 1 cut(s) 1197
BstX2I RGATCY 2 cut(s) 5, 1016
BstYI RGATCY 2 cut(s) 5, 1016
BstZ17I GTATAC 2 cut(s) 861, 1153
Bsu15I ATCGAT 3 cut(s) 316, 756, 1370
BsuRI GGCC 2 cut(s) 74, 1552
BsuTUI ATCGAT 3 cut(s) 316, 756, 1370
BtgI CCRYGG 1 cut(s) 1349
BtsCI GGATG 3 cut(s) 270, 1262, 1536
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 552, 975
CciI TCATGA 2 cut(s) 21, 678
CfoI GCGC 2 cut(s) 556, 676
ClaI ATCGAT 3 cut(s) 316, 756, 1370
CseI GACGC 1 cut(s) 433
Csp6I GTAC 3 cut(s) 406, 594, 1468
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 8 cut(s) 22, 159, 287, 440, 679, 704, 842, 1010
CviQI GTAC 3 cut(s) 406, 594, 1468
DdeI CTNAG 3 cut(s) 1125, 1411, 1560
DpnI GATC 4 cut(s) 7, 169, 1018, 1373
DpnII GATC 4 cut(s) 5, 167, 1016, 1371
DrdI GACNNNNNNGTC 2 cut(s) 387, 539
DseDI GACNNNNNNGTC 2 cut(s) 387, 539
Eam1104I CTCTTC 4 cut(s) 147, 177, 1074, 1422
EarI CTCTTC 4 cut(s) 147, 177, 1074, 1422
Ecl136II GAGCTC 1 cut(s) 1084
Eco130I CCWWGG 2 cut(s) 535, 924
Eco147I AGGCCT 1 cut(s) 1552
Eco24I GRGCYC 2 cut(s) 192, 1086
Eco53kI GAGCTC 1 cut(s) 1084
Eco57I CTGAAG 1 cut(s) 788
Eco88I CYCGRG 1 cut(s) 1053
Eco91I GGTNACC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 1084
EcoO65I GGTNACC 1 cut(s) 587
EcoT14I CCWWGG 2 cut(s) 535, 924
EcoT38I GRGCYC 2 cut(s) 192, 1086
ErhI CCWWGG 2 cut(s) 535, 924
Esp3I CGTCTC 2 cut(s) 451, 1352
FaeI CATG 8 cut(s) 25, 162, 290, 443, 682, 707, 845, 1013
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FaqI GGGAC 1 cut(s) 461
FatI CATG 8 cut(s) 21, 158, 286, 439, 678, 703, 841, 1009
FauI CCCGC 1 cut(s) 787
FblI GTMKAC 4 cut(s) 609, 860, 920, 1152
FokI GGATG 3 cut(s) 277, 1269, 1543
FriOI GRGCYC 2 cut(s) 192, 1086
FspBI CTAG 5 cut(s) 401, 557, 974, 1538, 1548
GlaI GCGC 2 cut(s) 555, 675
GsuI CTGGAG 1 cut(s) 1376
HaeIII GGCC 2 cut(s) 74, 1552
HapII CCGG 2 cut(s) 149, 642
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 556, 676
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 8 cut(s) 25, 162, 290, 443, 682, 707, 845, 1013
Hin6I GCGC 2 cut(s) 554, 674
HinP1I GCGC 2 cut(s) 554, 674
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HindIII AAGCTT 4 cut(s) 105, 221, 731, 1485
HinfI GANTC 7 cut(s) 88, 213, 697, 940, 1312, 1363, 1562
HpaII CCGG 2 cut(s) 149, 642
HphI GGTGA 5 cut(s) 69, 281, 407, 1409, 1444
Hpy166II GTNNAC 5 cut(s) 610, 861, 921, 1153, 1468
Hpy188I TCNGA 6 cut(s) 167, 172, 228, 332, 492, 1414
Hpy188III TCNNGA 7 cut(s) 22, 149, 217, 482, 679, 724, 1525
Hpy8I GTNNAC 5 cut(s) 610, 861, 921, 1153, 1468
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 5 cut(s) 223, 763, 1171, 1273, 1489
HpyCH4IV ACGT 5 cut(s) 343, 713, 983, 1104, 1235
HpyCH4V TGCA 4 cut(s) 869, 1158, 1388, 1442
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 692, 1043, 1338
HpyF3I CTNAG 3 cut(s) 1125, 1411, 1560
HpySE526I ACGT 5 cut(s) 343, 713, 983, 1104, 1235
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 8 cut(s) 25, 162, 290, 443, 682, 707, 845, 1013
HspAI GCGC 2 cut(s) 554, 674
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 4 cut(s) 5, 167, 1016, 1371
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 3 cut(s) 187, 643, 1544
LweI GCATC 1 cut(s) 1546
MaeI CTAG 5 cut(s) 401, 557, 974, 1538, 1548
MaeII ACGT 5 cut(s) 343, 713, 983, 1104, 1235
MaeIII GTNAC 3 cut(s) 235, 587, 1025
MalI GATC 4 cut(s) 7, 169, 1018, 1373
MbiI CCGCTC 1 cut(s) 1076
MboI GATC 4 cut(s) 5, 167, 1016, 1371
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 2 cut(s) 5, 1016
MhlI GDGCHC 3 cut(s) 192, 349, 1086
MluCI AATT 7 cut(s) 51, 422, 624, 913, 1130, 1182, 1225
MlyI GAGTC 3 cut(s) 691, 1357, 1571
MroI TCCGGA 1 cut(s) 148
MseI TTAA 3 cut(s) 312, 1116, 1218
MslI CAYNNNNRTG 1 cut(s) 1301
MspI CCGG 2 cut(s) 149, 642
MspR9I CCNGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 1 cut(s) 1444
MvnI CGCG 1 cut(s) 1197
MwoI GCNNNNNNNGC 4 cut(s) 80, 692, 1043, 1338
NciI CCSGG 1 cut(s) 642
NdeII GATC 4 cut(s) 5, 167, 1016, 1371
NheI GCTAGC 1 cut(s) 973
NlaIII CATG 8 cut(s) 25, 162, 290, 443, 682, 707, 845, 1013
NlaIV GGNNCC 2 cut(s) 189, 1064
NspI RCATGY 2 cut(s) 162, 845
NspV TTCGAA 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 1053
PagI TCATGA 2 cut(s) 21, 678
PaqCI CACCTGC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 1552
PciI ACATGT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 2 cut(s) 340, 1367
PctI GAATGC 1 cut(s) 1444
PfeI GAWTC 4 cut(s) 88, 213, 940, 1312
PflMI CCANNNNNTGG 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 640
PleI GAGTC 3 cut(s) 691, 1357, 1570
PpsI GAGTC 3 cut(s) 691, 1357, 1570
PscI ACATGT 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 1086
PspEI GGTNACC 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 189, 1064
PspXI VCTCGAGB 1 cut(s) 1053
PsuI RGATCY 2 cut(s) 5, 1016
RsaI GTAC 3 cut(s) 407, 595, 1469
RsaNI GTAC 3 cut(s) 406, 594, 1468
RseI CAYNNNNRTG 1 cut(s) 1301
SacI GAGCTC 1 cut(s) 1086
SalI GTCGAC 1 cut(s) 919
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 3 cut(s) 312, 1116, 1218
Sau3AI GATC 4 cut(s) 5, 167, 1016, 1371
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 3 cut(s) 691, 1357, 1571
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 3 cut(s) 192, 349, 1086
SfaNI GCATC 1 cut(s) 1546
Sfr274I CTCGAG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 4 cut(s) 350, 480, 734, 1053
SmoI CTYRAG 4 cut(s) 350, 480, 734, 1053
Sse9I AATT 7 cut(s) 51, 422, 624, 913, 1130, 1182, 1225
SseBI AGGCCT 1 cut(s) 1552
SsiI CCGC 3 cut(s) 794, 1076, 1195
SspI AATATT 1 cut(s) 38
SspMI CTAG 5 cut(s) 401, 557, 974, 1538, 1548
SstI GAGCTC 1 cut(s) 1086
StuI AGGCCT 1 cut(s) 1552
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 2 cut(s) 535, 924
TaiI ACGT 5 cut(s) 346, 716, 986, 1107, 1238
TasI AATT 7 cut(s) 51, 422, 624, 913, 1130, 1182, 1225
TatI WGTACW 2 cut(s) 405, 1467
TfiI GAWTC 4 cut(s) 88, 213, 940, 1312
Tru1I TTAA 3 cut(s) 312, 1116, 1218
Tru9I TTAA 3 cut(s) 312, 1116, 1218
Van91I CCANNNNNTGG 1 cut(s) 287
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 422
XceI RCATGY 2 cut(s) 162, 845
XhoI CTCGAG 1 cut(s) 1053
XmiI GTMKAC 4 cut(s) 609, 860, 920, 1152
XspI CTAG 5 cut(s) 401, 557, 974, 1538, 1548
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.