Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012552

Physical Location & Seq

Genomic Coordinates Forward (+)

30934611 .. 30936746

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGCAAAGGCTGTACCTTGTGATACAGCGCAGTTTGGTTCAAGCAAAACCTCAAACACTTGGTGTGCTCTATTTCTCCCCCACCAAAATCCCATCCACCTTCAACTTTTTCCTCTGTACCCAAACACCCAATGATGCCCCCCATGAAGCCTCATACCCAAAACAAGAAGAACCCAGAAGCTGCTTATCTTACAGAATCGAGAAGCTTCCAAGAGGCGAGCCAGTTGGGTCTGCATTCCAGAGCTGGATGGGTGATGGCTTCCCCATTCACAGAGGTGACATCTTCCATGCCATTAATCGACTTAGAAAGCTCAAGTCTAACCAACGCGCTCTTGAGGTTATGGAATGGGTGATCAGAGAGAGGCCCTACATGCCAAAGGAGCTAGACTACTCTTATCTGTTGGAGTTTACAACCAAGTTTCATGGGATATCACAAGGTAAAGAACTCTTTACGCGTGTTCCTCTGGAGTTTCAGAATGAACTCCTTTACAATAATCTTGTGATTGCTTGCTTGGACAAAGGAGCAATAAGGCTTCCGCTTGAGTGCATGAAGAGAATGAGGGAGTTGGGCCATCCTATCTCGCACTTGGTGTTTAATCGGCTCATTATTCTGCATTCTTCATCAAGGCGTAAGAAATTGATACCAAAAATTCTTGCTCAGATGAAGGCTGATAAAGTGGCTAGACATGCTTCCACATTCAACATTCTGATGAAAATGGAAGCCAGTGAACACAATGTTGATGGTTTGATGAAGGTATATTCGGATATGAAGCGAGAAAATGTTGAGCCGAATGAAATTTCATACTGCATCATAGCTACTGCCTATGCAGTGGCGAGGTTACATACTGCTGCTGAAGCTTATGTTGAAGCCTTGGAGAACTCAGCTACAGGTAAAAACTGGTCAACACTAGATGTTCTGATAATGTTATATGGGTATTTGGGGAAGGAGAAGCAGCTAGAGAAAACTTGGGGCTTAGTGAAACAACTCCCCCGTGTCAGGTCTAAGAGTTATGTGATGGCAATTGAAGCATTTGGTAGAATTGGCCAACTCACTCTTGCTGAAGAACTCTGGTTAGAGATGAAATCAGTAAAAGGGTTGAGATCCACCGAGCAATTCAACTCTATTATATCTGTCTATTGCAAGCATGGGCTGATTGATAAAGCAACTGGAATTTTCAGGGAAATAACTACAAACAGTTGCAAACCAAATGCTATAACTTTCCGGCATCTAGCTTTGGGTTGCCTAAAAGCAGGATTGGTAGAGGAAGCCACCAAGACTCTAGACCTGGGGATGGATTTGACAATGAGCAATGTGGTCAGGAATTCTACCCCATGGTTGGAGACCACTCTTTTGATAATCGAGGCTTTTGTGGAGAAGGGTGATATAAGGAACGTTGAGAAGTTGTTTGAGGAACTAGCTAAAGCCAAGTATATAAGGTACACTTTTGTATACAACACTTTGATCAAGGCTTATGTGAAGGCCAAAATTTATGATCCAAATCTTTTGAAGAGGATGATTCTAGGAGGTGCACGACCAGATGCTGAAACCTATAGTCTGATGAAACTTGCTGAGCAGTTTCAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010035 GO:0010038 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

529

Amino Acids

60.53

Weight (kDa)

9.31

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	231 - 276	1.5e-08	PPR repeat family
PPR_2	PF13041	372 - 414	3.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07590
fragaria_vesca	FvH4_3g36060 FvH4_3g36060
malus_domestica	MD11G1109000.v1.1
prunus_persica	Prupe.6G077700_v2.0.a1
pyrus_communis	pycom11g09010
rosa_chinensis	RchiOBHm_Chr5g0064501
rosa_laevigata	RLG00000035729
rosa_multiflora	Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002
rosa_roxburghii	Rroxscaffold_1G00016520
rosa_rugosa	Rorug05G0365500 Rorug05G0365600
rosa_samantha	Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300
rosa_wichuraiana	Rw5G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1449
AccII	CGCG	2 cut(s)	327, 454
AciI	CCGC	1 cut(s)	536
AclI	AACGTT	1 cut(s)	1392
AclWI	GGATC	2 cut(s)	1095, 1487
AcoI	YGGCCR	1 cut(s)	1042
AcsI	RAATTY	5 cut(s)	648, 795, 1170, 1321, 1485
AcuI	CTGAAG	2 cut(s)	873, 1080
AdeI	CACNNNGTG	2 cut(s)	62, 589
AfaI	GTAC	3 cut(s)	14, 118, 1439
AfiI	CCNNNNNNNGG	3 cut(s)	996, 1291, 1336
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	8 cut(s)	41, 103, 700, 866, 1025, 1117, 1507, 1580
AjnI	CCWGG	1 cut(s)	1284
AleI	CACNNNNGTG	1 cut(s)	273
Alw21I	GWGCWC	2 cut(s)	69, 1531
Alw26I	GTCTC	1 cut(s)	1334
Alw44I	GTGCAC	1 cut(s)	1527
AlwI	GGATC	2 cut(s)	1095, 1487
AlwNI	CAGNNNCTG	2 cut(s)	180, 1541
AoxI	GGCC	4 cut(s)	362, 568, 1042, 1479
ApaLI	GTGCAC	1 cut(s)	1527
ApeKI	GCWGC	3 cut(s)	180, 848, 952
ApoI	RAATTY	5 cut(s)	648, 795, 1170, 1321, 1485
ArsI	GACNNNNNNTTYG	2 cut(s)	1333, 1365
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	30, 329
AspS9I	GGNCC	2 cut(s)	363, 568
AsuHPI	GGTGA	4 cut(s)	263, 287, 361, 1391
BaeGI	GKGCMC	1 cut(s)	1531
BalI	TGGCCA	1 cut(s)	1044
Bbv12I	GWGCWC	2 cut(s)	69, 1531
BbvI	GCAGC	3 cut(s)	167, 835, 964
BccI	CCATC	7 cut(s)	100, 241, 248, 579, 734, 1009, 1285
BciT130I	CCWGG	1 cut(s)	1286
BclI	TGATCA	2 cut(s)	351, 1461
BcoDI	GTCTC	1 cut(s)	1334
BfaI	CTAG	8 cut(s)	383, 681, 908, 956, 1229, 1280, 1415, 1520
BfmI	CTRYAG	2 cut(s)	885, 1549
BisI	GCNGC	3 cut(s)	181, 849, 953
BlpI	GCTNAGC	1 cut(s)	1569
BlsI	GCNGC	3 cut(s)	182, 850, 954
Bme1390I	CCNGG	1 cut(s)	1286
BmgT120I	GGNCC	2 cut(s)	363, 568
BmrFI	CCNGG	1 cut(s)	1286
BmsI	GCATC	4 cut(s)	124, 816, 1234, 1528
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	1569
BpuEI	CTTGAG	3 cut(s)	296, 353, 560
BsaBI	GATNNNNATC	1 cut(s)	1497
BsaI	GGTCTC	1 cut(s)	1334
BsaJI	CCNNGG	3 cut(s)	870, 1285, 1331
Bsc4I	CCNNNNNNNGG	3 cut(s)	996, 1291, 1336
Bse1I	ACTGG	4 cut(s)	221, 723, 902, 1171
Bse3DI	GCAATG	1 cut(s)	1315
Bse8I	GATNNNNATC	1 cut(s)	1497
BseBI	CCWGG	1 cut(s)	1286
BseDI	CCNNGG	3 cut(s)	870, 1285, 1331
BseGI	GGATG	5 cut(s)	92, 252, 571, 1296, 1518
BseJI	GATNNNNATC	1 cut(s)	1497
BseLI	CCNNNNNNNGG	3 cut(s)	996, 1291, 1336
BseMI	GCAATG	1 cut(s)	1315
BseMII	CTCAG	3 cut(s)	671, 894, 1560
BseNI	ACTGG	4 cut(s)	221, 723, 902, 1171
BseSI	GKGCMC	1 cut(s)	1531
BseXI	GCAGC	3 cut(s)	167, 835, 964
Bsh1236I	CGCG	2 cut(s)	327, 454
BshFI	GGCC	4 cut(s)	364, 570, 1044, 1481
BsiHKAI	GWGCWC	2 cut(s)	69, 1531
BsiSI	CCGG	1 cut(s)	1222
BslI	CCNNNNNNNGG	3 cut(s)	996, 1291, 1336
BsmAI	GTCTC	1 cut(s)	1334
BsmI	GAATGC	2 cut(s)	233, 613
BsnI	GGCC	4 cut(s)	364, 570, 1044, 1481
Bso31I	GGTCTC	1 cut(s)	1334
Bsp1286I	GDGCHC	2 cut(s)	69, 1531
Bsp143I	GATC	4 cut(s)	351, 1100, 1461, 1492
Bsp1720I	GCTNAGC	1 cut(s)	1569
Bsp19I	CCATGG	1 cut(s)	1331
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	4 cut(s)	364, 570, 1044, 1481
BspCNI	CTCAG	3 cut(s)	670, 893, 1561
BspFNI	CGCG	2 cut(s)	327, 454
BspPI	GGATC	2 cut(s)	1095, 1487
BspTNI	GGTCTC	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	1315
BsrI	ACTGG	4 cut(s)	221, 723, 902, 1171
BssECI	CCNNGG	3 cut(s)	870, 1285, 1331
BssMI	GATC	4 cut(s)	351, 1100, 1461, 1492
BssNAI	GTATAC	1 cut(s)	1450
BssT1I	CCWWGG	2 cut(s)	870, 1331
Bst1107I	GTATAC	1 cut(s)	1450
Bst2UI	CCWGG	1 cut(s)	1286
Bst4CI	ACNGT	1 cut(s)	1196
Bst6I	CTCTTC	2 cut(s)	545, 1502
BstC8I	GCNNGC	3 cut(s)	218, 508, 1142
BstDEI	CTNAG	6 cut(s)	302, 657, 880, 973, 1002, 1569
BstDSI	CCRYGG	1 cut(s)	1331
BstF5I	GGATG	5 cut(s)	92, 252, 571, 1296, 1518
BstFNI	CGCG	2 cut(s)	327, 454
BstHHI	GCGC	2 cut(s)	30, 329
BstKTI	GATC	4 cut(s)	354, 1103, 1464, 1495
BstMAI	GTCTC	1 cut(s)	1334
BstMBI	GATC	4 cut(s)	351, 1100, 1461, 1492
BstMWI	GCNNNNNNNGC	5 cut(s)	370, 379, 686, 854, 1025
BstNI	CCWGG	1 cut(s)	1286
BstNSI	RCATGY	2 cut(s)	373, 689
BstSCI	CCNGG	1 cut(s)	1284
BstSFI	CTRYAG	2 cut(s)	885, 1549
BstSLI	GKGCMC	1 cut(s)	1531
BstUI	CGCG	2 cut(s)	327, 454
BstV1I	GCAGC	3 cut(s)	167, 835, 964
BstX2I	RGATCY	1 cut(s)	1100
BstYI	RGATCY	1 cut(s)	1100
BstZ17I	GTATAC	1 cut(s)	1450
BsuRI	GGCC	4 cut(s)	364, 570, 1044, 1481
BtgI	CCRYGG	1 cut(s)	1331
BtsCI	GGATG	5 cut(s)	92, 252, 571, 1296, 1518
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	2 cut(s)	730, 834
Cac8I	GCNNGC	3 cut(s)	218, 508, 1142
CaiI	CAGNNNCTG	2 cut(s)	180, 1541
CfoI	GCGC	2 cut(s)	30, 329
Cfr13I	GGNCC	2 cut(s)	363, 568
Csp6I	GTAC	3 cut(s)	13, 117, 1438
CviAII	CATG	9 cut(s)	143, 287, 370, 422, 547, 686, 1145, 1332, 1584
CviQI	GTAC	3 cut(s)	13, 117, 1438
DdeI	CTNAG	6 cut(s)	302, 657, 880, 973, 1002, 1569
DpnI	GATC	4 cut(s)	353, 1102, 1463, 1494
DpnII	GATC	4 cut(s)	351, 1100, 1461, 1492
DraIII	CACNNNGTG	2 cut(s)	62, 589
EaeI	YGGCCR	1 cut(s)	1042
Eam1104I	CTCTTC	2 cut(s)	545, 1502
EarI	CTCTTC	2 cut(s)	545, 1502
Eco130I	CCWWGG	2 cut(s)	870, 1331
Eco31I	GGTCTC	1 cut(s)	1334
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	873, 1080
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	1321
EcoRII	CCWGG	1 cut(s)	1284
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	870, 1331
ErhI	CCWWGG	2 cut(s)	870, 1331
FaeI	CATG	9 cut(s)	146, 290, 373, 425, 550, 689, 1148, 1335, 1587
FalI	AAGNNNNNCTT	2 cut(s)	1426, 1458
FatI	CATG	9 cut(s)	142, 286, 369, 421, 546, 685, 1144, 1331, 1583
FbaI	TGATCA	2 cut(s)	351, 1461
FblI	GTMKAC	1 cut(s)	1449
Fnu4HI	GCNGC	3 cut(s)	181, 849, 953
FokI	GGATG	5 cut(s)	79, 259, 558, 1303, 1525
Fsp4HI	GCNGC	3 cut(s)	181, 849, 953
FspBI	CTAG	8 cut(s)	383, 681, 908, 956, 1229, 1280, 1415, 1520
GlaI	GCGC	2 cut(s)	29, 328
GluI	GCNGC	3 cut(s)	181, 849, 953
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	4 cut(s)	364, 570, 1044, 1481
HapII	CCGG	1 cut(s)	1222
HhaI	GCGC	2 cut(s)	30, 329
Hin1II	CATG	9 cut(s)	146, 290, 373, 425, 550, 689, 1148, 1335, 1587
Hin6I	GCGC	2 cut(s)	28, 327
HinP1I	GCGC	2 cut(s)	28, 327
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	2 cut(s)	203, 855
HinfI	GANTC	3 cut(s)	195, 1276, 1516
HpaII	CCGG	1 cut(s)	1222
HphI	GGTGA	4 cut(s)	263, 287, 361, 1391
Hpy166II	GTNNAC	6 cut(s)	408, 728, 903, 1440, 1450, 1529
Hpy188I	TCNGA	7 cut(s)	356, 474, 660, 708, 763, 918, 1557
Hpy188III	TCNNGA	6 cut(s)	199, 238, 332, 464, 1280, 1318
Hpy8I	GTNNAC	6 cut(s)	408, 728, 903, 1440, 1450, 1529
HpyAV	CCTTC	6 cut(s)	109, 658, 745, 937, 1369, 1471
HpyCH4III	ACNGT	1 cut(s)	1196
HpyCH4IV	ACGT	1 cut(s)	1392
HpyCH4V	TGCA	9 cut(s)	4, 233, 546, 613, 807, 827, 1140, 1200, 1529
HpyF10VI	GCNNNNNNNGC	5 cut(s)	370, 379, 686, 854, 1025
HpyF3I	CTNAG	6 cut(s)	302, 657, 880, 973, 1002, 1569
HpySE526I	ACGT	1 cut(s)	1392
Hsp92II	CATG	9 cut(s)	146, 290, 373, 425, 550, 689, 1148, 1335, 1587
HspAI	GCGC	2 cut(s)	28, 327
Ksp22I	TGATCA	2 cut(s)	351, 1461
Kzo9I	GATC	4 cut(s)	351, 1100, 1461, 1492
LmnI	GCTCC	2 cut(s)	379, 521
Lsp1109I	GCAGC	3 cut(s)	167, 835, 964
LweI	GCATC	4 cut(s)	124, 816, 1234, 1528
MaeI	CTAG	8 cut(s)	383, 681, 908, 956, 1229, 1280, 1415, 1520
MaeII	ACGT	1 cut(s)	1392
MaeIII	GTNAC	2 cut(s)	275, 837
MalI	GATC	4 cut(s)	353, 1102, 1463, 1494
MboI	GATC	4 cut(s)	351, 1100, 1461, 1492
MboII	GAAGA	6 cut(s)	179, 274, 562, 609, 1073, 1519
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	1 cut(s)	1100
MhlI	GDGCHC	2 cut(s)	69, 1531
MlsI	TGGCCA	1 cut(s)	1044
MluCI	AATT	9 cut(s)	635, 648, 795, 1020, 1038, 1112, 1170, 1321, 1485
MluI	ACGCGT	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	1044
MlyI	GAGTC	1 cut(s)	1270
MmeI	TCCRAC	2 cut(s)	381, 1317
Mox20I	TGGCCA	1 cut(s)	1044
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	2 cut(s)	294, 594
MslI	CAYNNNNRTG	2 cut(s)	273, 707
Msp20I	TGGCCA	1 cut(s)	1044
MspI	CCGG	1 cut(s)	1222
MspR9I	CCNGG	1 cut(s)	1286
MunI	CAATTG	1 cut(s)	1020
Mva1269I	GAATGC	2 cut(s)	233, 613
MvaI	CCWGG	1 cut(s)	1286
MvnI	CGCG	2 cut(s)	327, 454
MwoI	GCNNNNNNNGC	5 cut(s)	370, 379, 686, 854, 1025
NcoI	CCATGG	1 cut(s)	1331
NdeII	GATC	4 cut(s)	351, 1100, 1461, 1492
NlaIII	CATG	9 cut(s)	146, 290, 373, 425, 550, 689, 1148, 1335, 1587
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	2 cut(s)	373, 689
OliI	CACNNNNGTG	1 cut(s)	273
PctI	GAATGC	2 cut(s)	233, 613
PfeI	GAWTC	2 cut(s)	195, 1516
PkrI	GCNGC	3 cut(s)	182, 850, 954
PleI	GAGTC	1 cut(s)	1270
PpsI	GAGTC	1 cut(s)	1270
PshBI	ATTAAT	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	1392
Psp6I	CCWGG	1 cut(s)	1284
PspGI	CCWGG	1 cut(s)	1284
PspPI	GGNCC	2 cut(s)	363, 568
PstNI	CAGNNNCTG	2 cut(s)	180, 1541
PsuI	RGATCY	1 cut(s)	1100
RsaI	GTAC	3 cut(s)	14, 118, 1439
RsaNI	GTAC	3 cut(s)	13, 117, 1438
RseI	CAYNNNNRTG	2 cut(s)	273, 707
SaqAI	TTAA	2 cut(s)	294, 594
SatI	GCNGC	3 cut(s)	181, 849, 953
Sau3AI	GATC	4 cut(s)	351, 1100, 1461, 1492
Sau96I	GGNCC	2 cut(s)	363, 568
SchI	GAGTC	1 cut(s)	1270
ScrFI	CCNGG	1 cut(s)	1286
SduI	GDGCHC	2 cut(s)	69, 1531
SfaNI	GCATC	4 cut(s)	124, 816, 1234, 1528
SfcI	CTRYAG	2 cut(s)	885, 1549
SmiMI	CAYNNNNRTG	2 cut(s)	273, 707
SmlI	CTYRAG	3 cut(s)	311, 332, 539
SmoI	CTYRAG	3 cut(s)	311, 332, 539
Sse9I	AATT	9 cut(s)	635, 648, 795, 1020, 1038, 1112, 1170, 1321, 1485
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	8 cut(s)	383, 681, 908, 956, 1229, 1280, 1415, 1520
StyD4I	CCNGG	1 cut(s)	1284
StyI	CCWWGG	2 cut(s)	870, 1331
TaaI	ACNGT	1 cut(s)	1196
TaiI	ACGT	1 cut(s)	1395
TaqI	TCGA	3 cut(s)	198, 298, 1359
TasI	AATT	9 cut(s)	635, 648, 795, 1020, 1038, 1112, 1170, 1321, 1485
TfiI	GAWTC	2 cut(s)	195, 1516
Tru1I	TTAA	2 cut(s)	294, 594
Tru9I	TTAA	2 cut(s)	294, 594
TscAI	CASTG	2 cut(s)	730, 834
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	3 cut(s)	180, 848, 952
Tsp45I	GTSAC	1 cut(s)	275
TspRI	CASTG	2 cut(s)	730, 834
VneI	GTGCAC	1 cut(s)	1527
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	5 cut(s)	648, 795, 1170, 1321, 1485
XbaI	TCTAGA	1 cut(s)	1279
XceI	RCATGY	2 cut(s)	373, 689
XmiI	GTMKAC	1 cut(s)	1449
XspI	CTAG	8 cut(s)	383, 681, 908, 956, 1229, 1280, 1415, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.