Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012552

Physical Location & Seq

Genomic Coordinates Reverse (-)

5297180 .. 5299983

Gene Structure 2804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGCAAACGCTGTACCTTGTGATACAGCGCAGGTTCGTTCAGGCAAAACCTCAAACAGTTTATGTCCCATATTTTTCTGCCAATAAAATCTCGTCTAGCTTCAAATTTTTTCTTTGCACCCAAACACCAAATGATTTTACCGGGAAAGTCTCTGAGTCAAAACGAGAAGAACCCAGGTCCTGCTTATCTTATAGGATTGAGAAGCTGCCAAATGGAGAACCAGTTGGGTCTGCTTTCCAGAGCTGGATGGGTGATGGATTTCCCATTCATAGAGGTGACATCTTTCACGCCATTAACCGTCTTAGGAAGCTCAAGTTGAATAAACGCGCTCTTGAGGTAATGGAATGGGTGATCAGAGAAAGGCCCTACAGGCCAAAGGAACTAGACTACTCTTATCTGTTGGAATTTACAACCAAGTTTCATGGGATATCTCAAGGTAAAGAACTCTTTACACGCGTTCCTCTTGAGTTTCAAAATGAGCTGCTTTACAACAATCTTGTGATTGCTTGCTTGGATAAGGGTGCAATAAGGCTTCCACTTGAGTGTATGAAGAAAATGAGGGAATTGGGTCATCCCATTTCACACTTGGTATTTAATCGACTCATTATTCTCCATTCCTCTTCAAGGCGTAAAAAGTTGATTGTAAAAATCCTTGCACAAATGAGGGCTGATAAAGTGGTTCTACATGCCTCCACATTCAACATTCTCATGAAAATAGAAGCCAACGAACACAATATTGAAGGATTGATGAAGGTATACTCCGATATGAAGCGAGCAAAAGTTGAGCCGAATGAAATATCTCACTGCATCGTAGCTACTGCACATGCAGTGGCAAGGTTGTATACCGCAGCTGAAGCGTATGTTGAAGCCTTAGAGAAGTCAGTTACAGGTAGTAACTGGTCAACACTTGATGTTCTAATTATGTTGTATGGTTATTTAGGGAAGGAGAAGGAGTTAGAGAGAACTTGGGGTTTAGTGAAGGAACTCCCCCATGTTCGGTCTAAAAGTTATGTGATGGCAATTGAAGCATTTGGTAGAATCAGCCAACTGAGCCGAGCTGAAGAACTTTGGTTAGAGATGAAGGCAGAAAAAGGGTTGAAAACTACTGAGCAGTTCAATTCTATGATATCTGTGTATTGCAAGCATGGGCTTATCGATAAAGCGTCTAAGCTTTTCAGGGAAATAAAGGCGGATGGGTGCAAACCAAATGCCATAACCTTTCGCCATCTTGCTTTGGGTTGCTTAAAAGCAGGATTGGTAGAGGAAGCCATTAAGACTCTAGAGATGGGGATGAGTTCGACAATGAGCAATGGTGTCAGGAATTCTACCCCATGGTTGGAGACCACTCATTCAATAATTGAGGCTTTCGCTGAGAATGGTGATGTAGGGAACGTTGAGAAGTTGTTTGAAGAACTTACTAAAGCCAAGTATGCAAGACATACTTTTGTATACAACACTTTAATTAAGGCTTATGTGAAGGCCAAAATTTATGATTCGAATCTTTTGAAGAGGATGATTCTAGGAGGCGCAAGGCCAGATGCCGAAACCTATAGTCTGATGAAACTTGAGGAGCAGTTTCGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010035 GO:0010038 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

529

Amino Acids

60.53

Weight (kDa)

9.36

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07590
fragaria_vesca	FvH4_3g36060 FvH4_3g36060
malus_domestica	MD11G1109000.v1.1
prunus_persica	Prupe.6G077700_v2.0.a1
pyrus_communis	pycom11g09010
rosa_chinensis	RchiOBHm_Chr5g0064501
rosa_laevigata	RLG00000035729
rosa_multiflora	Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002
rosa_roxburghii	Rroxscaffold_1G00016520
rosa_rugosa	Rorug05G0365500 Rorug05G0365600
rosa_samantha	Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300
rosa_wichuraiana	Rw5G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccI	GTMKAC	3 cut(s)	756, 842, 1449
AccII	CGCG	2 cut(s)	327, 456
AciI	CCGC	2 cut(s)	846, 1190
AclI	AACGTT	1 cut(s)	1392
AcsI	RAATTY	4 cut(s)	104, 404, 1321, 1485
AcuI	CTGAAG	2 cut(s)	873, 1080
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	624, 996, 1336
AflIII	ACRYGT	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	173
AleI	CACNNNNGTG	1 cut(s)	541
AluBI	AGCT	9 cut(s)	99, 205, 243, 310, 481, 815, 851, 1058, 1171
AluI	AGCT	9 cut(s)	99, 205, 243, 310, 481, 815, 851, 1058, 1171
Alw26I	GTCTC	2 cut(s)	154, 1334
AlwNI	CAGNNNCTG	1 cut(s)	180
AoxI	GGCC	4 cut(s)	362, 371, 1479, 1532
ApeKI	GCWGC	3 cut(s)	205, 481, 848
ApoI	RAATTY	4 cut(s)	104, 404, 1321, 1485
AspLEI	GCGC	3 cut(s)	30, 329, 1529
AspS9I	GGNCC	2 cut(s)	177, 363
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	263, 287, 361, 1391
AsuII	TTCGAA	2 cut(s)	1496, 1579
AvaII	GGWCC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	192, 468, 860
BccI	CCATC	6 cut(s)	241, 248, 1009, 1187, 1233, 1279
BciT130I	CCWGG	1 cut(s)	175
BclI	TGATCA	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	154, 1334
BfaI	CTAG	4 cut(s)	96, 383, 1280, 1520
BfmI	CTRYAG	2 cut(s)	367, 1549
BfuAI	ACCTGC	1 cut(s)	21
BglI	GCCNNNNNGGC	1 cut(s)	370
BisI	GCNGC	3 cut(s)	206, 482, 849
BlsI	GCNGC	3 cut(s)	207, 483, 850
Bme1390I	CCNGG	2 cut(s)	142, 175
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	177, 363
BmrFI	CCNGG	2 cut(s)	142, 175
BmsI	GCATC	2 cut(s)	816, 1528
Bpu14I	TTCGAA	2 cut(s)	1496, 1579
BpuEI	CTTGAG	6 cut(s)	296, 353, 417, 485, 560, 1586
BpuMI	CCSGG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	1155
BsaBI	GATNNNNATC	1 cut(s)	1497
BsaI	GGTCTC	1 cut(s)	1334
BsaJI	CCNNGG	2 cut(s)	173, 1331
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 938, 968
Bsc4I	CCNNNNNNNGG	3 cut(s)	624, 996, 1336
Bse1I	ACTGG	2 cut(s)	221, 902
Bse3DI	GCAATG	1 cut(s)	1315
Bse8I	GATNNNNATC	1 cut(s)	1497
BseBI	CCWGG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	1155
BseDI	CCNNGG	2 cut(s)	173, 1331
BseGI	GGATG	5 cut(s)	252, 571, 1198, 1296, 1518
BseJI	GATNNNNATC	1 cut(s)	1497
BseLI	CCNNNNNNNGG	3 cut(s)	624, 996, 1336
BseMI	GCAATG	1 cut(s)	1315
BseMII	CTCAG	4 cut(s)	144, 1040, 1098, 1362
BseNI	ACTGG	2 cut(s)	221, 902
BseRI	GAGGAG	1 cut(s)	1583
BseXI	GCAGC	3 cut(s)	192, 468, 860
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	2 cut(s)	327, 456
BshFI	GGCC	4 cut(s)	364, 373, 1481, 1534
BshVI	ATCGAT	1 cut(s)	1155
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	624, 996, 1336
BsmAI	GTCTC	2 cut(s)	154, 1334
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	4 cut(s)	364, 373, 1481, 1534
Bso31I	GGTCTC	1 cut(s)	1334
Bsp119I	TTCGAA	2 cut(s)	1496, 1579
Bsp143I	GATC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	1331
BspACI	CCGC	2 cut(s)	846, 1190
BspANI	GGCC	4 cut(s)	364, 373, 1481, 1534
BspCNI	CTCAG	4 cut(s)	145, 1041, 1099, 1363
BspDI	ATCGAT	1 cut(s)	1155
BspFNI	CGCG	2 cut(s)	327, 456
BspHI	TCATGA	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	21
BspT104I	TTCGAA	2 cut(s)	1496, 1579
BspTNI	GGTCTC	1 cut(s)	1334
BsrDI	GCAATG	1 cut(s)	1315
BsrI	ACTGG	2 cut(s)	221, 902
BssECI	CCNNGG	2 cut(s)	173, 1331
BssMI	GATC	1 cut(s)	351
BssNAI	GTATAC	3 cut(s)	757, 843, 1450
BssT1I	CCWWGG	1 cut(s)	1331
Bst1107I	GTATAC	3 cut(s)	757, 843, 1450
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	58, 299
Bst6I	CTCTTC	2 cut(s)	625, 1502
BstBI	TTCGAA	2 cut(s)	1496, 1579
BstC8I	GCNNGC	3 cut(s)	508, 774, 1142
BstDEI	CTNAG	7 cut(s)	153, 302, 871, 1049, 1107, 1167, 1371
BstDSI	CCRYGG	1 cut(s)	1331
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstF5I	GGATG	5 cut(s)	252, 571, 1198, 1296, 1518
BstFNI	CGCG	2 cut(s)	327, 456
BstHHI	GCGC	3 cut(s)	30, 329, 1529
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	154, 1334
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	5 cut(s)	370, 854, 1025, 1050, 1430
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	2 cut(s)	689, 827
BstSCI	CCNGG	2 cut(s)	140, 173
BstSFI	CTRYAG	2 cut(s)	367, 1549
BstUI	CGCG	2 cut(s)	327, 456
BstV1I	GCAGC	3 cut(s)	192, 468, 860
BstZ17I	GTATAC	3 cut(s)	757, 843, 1450
Bsu15I	ATCGAT	1 cut(s)	1155
BsuRI	GGCC	4 cut(s)	364, 373, 1481, 1534
BsuTUI	ATCGAT	1 cut(s)	1155
BtgI	CCRYGG	1 cut(s)	1331
BtsCI	GGATG	5 cut(s)	252, 571, 1198, 1296, 1518
BtsI	GCAGTG	2 cut(s)	802, 834
BtsIMutI	CAGTG	2 cut(s)	802, 834
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	508, 774, 1142
CaiI	CAGNNNCTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	3 cut(s)	30, 329, 1529
Cfr13I	GGNCC	2 cut(s)	177, 363
ClaI	ATCGAT	1 cut(s)	1155
CseI	GACGC	1 cut(s)	1152
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	7 cut(s)	422, 686, 709, 824, 992, 1145, 1332
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	7 cut(s)	153, 302, 871, 1049, 1107, 1167, 1371
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	625, 1502
EarI	CTCTTC	2 cut(s)	625, 1502
EciI	GGCGGA	1 cut(s)	1205
Eco130I	CCWWGG	1 cut(s)	1331
Eco31I	GGTCTC	1 cut(s)	1334
Eco32I	GATATC	2 cut(s)	429, 1128
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	873, 1080
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoO109I	RGGNCCY	2 cut(s)	177, 363
EcoRI	GAATTC	1 cut(s)	1321
EcoRII	CCWGG	1 cut(s)	173
EcoRV	GATATC	2 cut(s)	429, 1128
EcoT14I	CCWWGG	1 cut(s)	1331
ErhI	CCWWGG	1 cut(s)	1331
FaeI	CATG	7 cut(s)	425, 689, 712, 827, 995, 1148, 1335
FalI	AAGNNNNNCTT	2 cut(s)	1426, 1458
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	7 cut(s)	421, 685, 708, 823, 991, 1144, 1331
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	3 cut(s)	756, 842, 1449
Fnu4HI	GCNGC	3 cut(s)	206, 482, 849
FokI	GGATG	5 cut(s)	259, 558, 1205, 1303, 1525
Fsp4HI	GCNGC	3 cut(s)	206, 482, 849
FspBI	CTAG	4 cut(s)	96, 383, 1280, 1520
GlaI	GCGC	3 cut(s)	29, 328, 1528
GluI	GCNGC	3 cut(s)	206, 482, 849
HaeIII	GGCC	4 cut(s)	364, 373, 1481, 1534
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	1152
HhaI	GCGC	3 cut(s)	30, 329, 1529
Hin1II	CATG	7 cut(s)	425, 689, 712, 827, 995, 1148, 1335
Hin6I	GCGC	3 cut(s)	28, 327, 1527
HinP1I	GCGC	3 cut(s)	28, 327, 1527
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	7 cut(s)	155, 600, 1038, 1276, 1493, 1498, 1516
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	263, 287, 361, 1391
Hpy166II	GTNNAC	4 cut(s)	757, 843, 903, 1450
Hpy188I	TCNGA	4 cut(s)	154, 356, 763, 1557
Hpy188III	TCNNGA	6 cut(s)	238, 332, 464, 709, 1280, 1318
Hpy8I	GTNNAC	4 cut(s)	757, 843, 903, 1450
HpyAV	CCTTC	7 cut(s)	734, 745, 937, 943, 973, 1075, 1471
HpyCH4III	ACNGT	2 cut(s)	58, 299
HpyCH4IV	ACGT	1 cut(s)	1392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	370, 854, 1025, 1050, 1430
HpyF3I	CTNAG	7 cut(s)	153, 302, 871, 1049, 1107, 1167, 1371
HpySE526I	ACGT	1 cut(s)	1392
Hsp92II	CATG	7 cut(s)	425, 689, 712, 827, 995, 1148, 1335
HspAI	GCGC	3 cut(s)	28, 327, 1527
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	1570
Lsp1109I	GCAGC	3 cut(s)	192, 468, 860
LweI	GCATC	2 cut(s)	816, 1528
MaeI	CTAG	4 cut(s)	96, 383, 1280, 1520
MaeII	ACGT	1 cut(s)	1392
MaeIII	GTNAC	3 cut(s)	275, 883, 893
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	6 cut(s)	179, 562, 612, 1073, 1421, 1519
MfeI	CAATTG	1 cut(s)	1020
MluI	ACGCGT	1 cut(s)	454
MlyI	GAGTC	3 cut(s)	164, 594, 1270
MmeI	TCCRAC	2 cut(s)	381, 1317
MseI	TTAA	6 cut(s)	294, 594, 1244, 1272, 1460, 1464
MslI	CAYNNNNRTG	3 cut(s)	273, 541, 707
MspA1I	CMGCKG	1 cut(s)	851
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	142, 175
MunI	CAATTG	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	327, 456
MwoI	GCNNNNNNNGC	5 cut(s)	370, 854, 1025, 1050, 1430
NciI	CCSGG	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	1331
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	7 cut(s)	425, 689, 712, 827, 995, 1148, 1335
NmeAIII	GCCGAG	1 cut(s)	1079
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	2 cut(s)	689, 827
NspV	TTCGAA	2 cut(s)	1496, 1579
OliI	CACNNNNGTG	1 cut(s)	541
PacI	TTAATTAA	1 cut(s)	1464
PagI	TCATGA	1 cut(s)	708
PfeI	GAWTC	4 cut(s)	1038, 1493, 1498, 1516
PkrI	GCNGC	3 cut(s)	207, 483, 850
PleI	GAGTC	3 cut(s)	163, 594, 1270
PpsI	GAGTC	3 cut(s)	163, 594, 1270
PpuMI	RGGWCCY	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	1392
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	177, 363
PspPPI	RGGWCCY	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	3 cut(s)	273, 541, 707
SaqAI	TTAA	6 cut(s)	294, 594, 1244, 1272, 1460, 1464
SatI	GCNGC	3 cut(s)	206, 482, 849
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	2 cut(s)	177, 363
SchI	GAGTC	3 cut(s)	164, 594, 1270
ScrFI	CCNGG	2 cut(s)	142, 175
SfaNI	GCATC	2 cut(s)	816, 1528
SfcI	CTRYAG	2 cut(s)	367, 1549
SfiI	GGCCNNNNNGGCC	1 cut(s)	370
SfuI	TTCGAA	2 cut(s)	1496, 1579
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	3 cut(s)	273, 541, 707
SmlI	CTYRAG	6 cut(s)	311, 332, 432, 464, 539, 1565
SmoI	CTYRAG	6 cut(s)	311, 332, 432, 464, 539, 1565
SsiI	CCGC	2 cut(s)	846, 1190
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	4 cut(s)	96, 383, 1280, 1520
StyD4I	CCNGG	2 cut(s)	140, 173
StyI	CCWWGG	1 cut(s)	1331
TaaI	ACNGT	2 cut(s)	58, 299
TaiI	ACGT	1 cut(s)	1395
TaqI	TCGA	5 cut(s)	598, 1155, 1298, 1496, 1579
TaqII	GACCGA	1 cut(s)	987
TfiI	GAWTC	4 cut(s)	1038, 1493, 1498, 1516
Tru1I	TTAA	6 cut(s)	294, 594, 1244, 1272, 1460, 1464
Tru9I	TTAA	6 cut(s)	294, 594, 1244, 1272, 1460, 1464
TscAI	CASTG	2 cut(s)	809, 834
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	3 cut(s)	205, 481, 848
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	9 cut(s)	257, 410, 563, 725, 764, 782, 807, 1094, 1574
TspRI	CASTG	2 cut(s)	809, 834
VpaK11BI	GGWCC	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	4 cut(s)	104, 404, 1321, 1485
XbaI	TCTAGA	1 cut(s)	1279
XceI	RCATGY	2 cut(s)	689, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmiI	GTMKAC	3 cut(s)	756, 842, 1449
XspI	CTAG	4 cut(s)	96, 383, 1280, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.