Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003352.1

Orthogroup ID

OG0012552

Physical Location & Seq

Genomic Coordinates Forward (+)

288 .. 1535

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003352.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggaatgggtgatcagagaaaggccctacaggccaaaggagctagactactcttatctgttggaatttacaaccaagtttcatgggatatcacaaggtaaagaactctttacgcgtgttcctcaggagtttcagaatgagctcctttacaacaatcttgtgattgcttgtttggacaaaggagcaataaggcttccgcttgagtgcatgaagaaaatgagggaattgggccatcctatctcgcacttggtatttaatcggctgattattctacattcatcatcaaggcgtaaaaaattgataccgaaaattcttgctcagatgaaggccgataaagtggccaggcatgcttccacatttaacattctgatgaaaatggaagccagtgaacacaatattgatgggttgatgaaggtatcctctgatatgaagcgagcaaatgttgaggcgaatgagatttcttactgcatcatagctactgcctatgcagtggcgaggttacatactgctgctgaagcttatgttgaagccttggagaagtcagctacaggtaaaaactggtcaacattggatgttctaataatgttatatgggtatttgggaaaggagaagcagctagagaaaacttggggcttagtgaaggaacttccctatgtcaggtctaagagttatgtgatggcaattgaagcatttggtagaattggccaactcacccgagctgaagaactctggttagagatgaaatcagtaaaagggttgagatccaccgagcaattcaactctattatatctgtctattgcaagcatgggctgattgacaaagcatctaaaattttcagggagataactacagatggttgcaaaccaaatgccataacttttcggcatcttgctttgggttgcttaaaagcaggattggtagacgaagccattaatactttagatttagggatggatttgacaatgtgcaatgtggtcaggaattctaccccatggttggagaccactctttcgataattgaggcttttgccgaaaggggtgatataaggaacgtcgagaagttgtttgaggaactagctaaagccaagtatataaggtacacttttgtatacaacactttgatcaaggcttatgtgaaggccaaaatttatgatccaaatcttttgaagagaatgattctaggaggtgcacgaccagatgctgaaacctatagtctgatgaaacttgccgagcagtttcggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010035 GO:0010038 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

415

Amino Acids

47.52

Weight (kDa)

9.22

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07590
fragaria_vesca	FvH4_3g36060 FvH4_3g36060
malus_domestica	MD11G1109000.v1.1
prunus_persica	Prupe.6G077700_v2.0.a1
pyrus_communis	pycom11g09010
rosa_chinensis	RchiOBHm_Chr5g0064501
rosa_laevigata	RLG00000035729
rosa_multiflora	Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002
rosa_roxburghii	Rroxscaffold_1G00016520
rosa_rugosa	Rorug05G0365500 Rorug05G0365600
rosa_samantha	Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300
rosa_wichuraiana	Rw5G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	921, 1110
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	2 cut(s)	756, 1148
AcoI	YGGCCR	2 cut(s)	339, 703
AcsI	RAATTY	5 cut(s)	65, 309, 831, 982, 1146
AcuI	CTGAAG	2 cut(s)	534, 741
AfaI	GTAC	1 cut(s)	1100
AfiI	CCNNNNNNNGG	2 cut(s)	657, 997
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	527, 686, 778, 1168
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	8 cut(s)	43, 142, 476, 518, 545, 616, 719, 1079
AluI	AGCT	8 cut(s)	43, 142, 476, 518, 545, 616, 719, 1079
Alw21I	GWGCWC	2 cut(s)	144, 1192
Alw26I	GTCTC	1 cut(s)	995
Alw44I	GTGCAC	1 cut(s)	1188
AlwI	GGATC	2 cut(s)	756, 1148
AlwNI	CAGNNNCTG	1 cut(s)	1202
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	7 cut(s)	23, 32, 229, 327, 339, 703, 1140
ApaLI	GTGCAC	1 cut(s)	1188
ApeKI	GCWGC	2 cut(s)	509, 613
ApoI	RAATTY	5 cut(s)	65, 309, 831, 982, 1146
ArsI	GACNNNNNNTTYG	2 cut(s)	994, 1026
AseI	ATTAAT	1 cut(s)	933
AspS9I	GGNCC	2 cut(s)	24, 229
AsuHPI	GGTGA	3 cut(s)	22, 703, 1052
AvaI	CYCGRG	1 cut(s)	714
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	1192
BalI	TGGCCA	2 cut(s)	341, 705
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	144, 1192
BbvI	GCAGC	2 cut(s)	496, 625
BccI	CCATC	5 cut(s)	240, 395, 670, 848, 946
BciT130I	CCWGG	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	2 cut(s)	12, 1122
BcoDI	GTCTC	1 cut(s)	995
BfaI	CTAG	4 cut(s)	44, 617, 1076, 1181
BfmI	CTRYAG	4 cut(s)	28, 546, 849, 1210
BfuI	GTATCC	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	510, 614
BlsI	GCNGC	2 cut(s)	511, 615
Bme1390I	CCNGG	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	24, 229
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	4 cut(s)	477, 833, 895, 1189
BpuEI	CTTGAG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	2 cut(s)	531, 992
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 997
Bse1I	ACTGG	2 cut(s)	384, 563
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	976
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	531, 992
BseGI	GGATG	3 cut(s)	232, 577, 957
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	2 cut(s)	657, 997
BseMI	GCAATG	1 cut(s)	976
BseMII	CTCAG	2 cut(s)	137, 332
BseNI	ACTGG	2 cut(s)	384, 563
BseSI	GKGCMC	1 cut(s)	1192
BseXI	GCAGC	2 cut(s)	496, 625
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	7 cut(s)	25, 34, 231, 329, 341, 705, 1142
BsiHKAI	GWGCWC	2 cut(s)	144, 1192
BsiHKCI	CYCGRG	1 cut(s)	714
BslI	CCNNNNNNNGG	2 cut(s)	657, 997
BsmAI	GTCTC	1 cut(s)	995
BsnI	GGCC	7 cut(s)	25, 34, 231, 329, 341, 705, 1142
Bso31I	GGTCTC	1 cut(s)	995
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	2 cut(s)	144, 1192
Bsp143I	GATC	4 cut(s)	12, 761, 1122, 1153
Bsp19I	CCATGG	1 cut(s)	992
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	7 cut(s)	25, 34, 231, 329, 341, 705, 1142
BspCNI	CTCAG	2 cut(s)	136, 331
BspFNI	CGCG	1 cut(s)	115
BspPI	GGATC	2 cut(s)	756, 1148
BspTNI	GGTCTC	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	976
BsrI	ACTGG	2 cut(s)	384, 563
BssECI	CCNNGG	2 cut(s)	531, 992
BssMI	GATC	4 cut(s)	12, 761, 1122, 1153
BssNAI	GTATAC	1 cut(s)	1111
BssT1I	CCWWGG	2 cut(s)	531, 992
Bst1107I	GTATAC	1 cut(s)	1111
Bst2UI	CCWGG	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	1163
BstC8I	GCNNGC	3 cut(s)	348, 435, 803
BstDEI	CTNAG	4 cut(s)	123, 318, 634, 663
BstDSI	CCRYGG	1 cut(s)	992
BstENI	CCTNNNNNAGG	1 cut(s)	655
BstF5I	GGATG	3 cut(s)	232, 577, 957
BstFNI	CGCG	1 cut(s)	115
BstKTI	GATC	4 cut(s)	15, 764, 1125, 1156
BstMAI	GTCTC	1 cut(s)	995
BstMBI	GATC	4 cut(s)	12, 761, 1122, 1153
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 40, 347, 515, 686
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	4 cut(s)	28, 546, 849, 1210
BstSLI	GKGCMC	1 cut(s)	1192
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	496, 625
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BstZ17I	GTATAC	1 cut(s)	1111
Bsu36I	CCTNAGG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	7 cut(s)	25, 34, 231, 329, 341, 705, 1142
BtgI	CCRYGG	1 cut(s)	992
BtsCI	GGATG	3 cut(s)	232, 577, 957
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	391, 495
Cac8I	GCNNGC	3 cut(s)	348, 435, 803
CaiI	CAGNNNCTG	1 cut(s)	1202
Cfr13I	GGNCC	2 cut(s)	24, 229
Csp6I	GTAC	1 cut(s)	1099
CviAII	CATG	5 cut(s)	83, 208, 347, 806, 993
CviQI	GTAC	1 cut(s)	1099
DdeI	CTNAG	4 cut(s)	123, 318, 634, 663
DpnI	GATC	4 cut(s)	14, 763, 1124, 1155
DpnII	GATC	4 cut(s)	12, 761, 1122, 1153
EaeI	YGGCCR	2 cut(s)	339, 703
Eam1104I	CTCTTC	1 cut(s)	1163
EarI	CTCTTC	1 cut(s)	1163
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	531, 992
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	995
Eco32I	GATATC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	534, 741
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	982
EcoRII	CCWGG	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	531, 992
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	531, 992
FaeI	CATG	5 cut(s)	86, 211, 350, 809, 996
FalI	AAGNNNNNCTT	2 cut(s)	1087, 1119
FatI	CATG	5 cut(s)	82, 207, 346, 805, 992
FbaI	TGATCA	2 cut(s)	12, 1122
FblI	GTMKAC	2 cut(s)	921, 1110
Fnu4HI	GCNGC	2 cut(s)	510, 614
FokI	GGATG	3 cut(s)	219, 584, 964
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	510, 614
FspBI	CTAG	4 cut(s)	44, 617, 1076, 1181
GluI	GCNGC	2 cut(s)	510, 614
HaeIII	GGCC	7 cut(s)	25, 34, 231, 329, 341, 705, 1142
Hin1II	CATG	5 cut(s)	86, 211, 350, 809, 996
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	1 cut(s)	1177
HphI	GGTGA	3 cut(s)	22, 703, 1052
Hpy166II	GTNNAC	6 cut(s)	389, 564, 922, 1101, 1111, 1190
Hpy188I	TCNGA	7 cut(s)	17, 135, 321, 369, 424, 1218, 1242
Hpy188III	TCNNGA	3 cut(s)	125, 979, 1057
Hpy8I	GTNNAC	6 cut(s)	389, 564, 922, 1101, 1111, 1190
Hpy99I	CGWCG	1 cut(s)	1058
HpyAV	CCTTC	4 cut(s)	319, 406, 634, 1132
HpyCH4IV	ACGT	1 cut(s)	1053
HpyCH4V	TGCA	7 cut(s)	207, 468, 488, 801, 861, 969, 1190
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 40, 347, 515, 686
HpyF3I	CTNAG	4 cut(s)	123, 318, 634, 663
HpySE526I	ACGT	1 cut(s)	1053
Hsp92II	CATG	5 cut(s)	86, 211, 350, 809, 996
Ksp22I	TGATCA	2 cut(s)	12, 1122
Kzo9I	GATC	4 cut(s)	12, 761, 1122, 1153
LmnI	GCTCC	3 cut(s)	40, 147, 182
Lsp1109I	GCAGC	2 cut(s)	496, 625
LweI	GCATC	4 cut(s)	477, 833, 895, 1189
MaeI	CTAG	4 cut(s)	44, 617, 1076, 1181
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	4 cut(s)	14, 763, 1124, 1155
MboI	GATC	4 cut(s)	12, 761, 1122, 1153
MboII	GAAGA	3 cut(s)	223, 734, 1180
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	2 cut(s)	144, 1192
MlsI	TGGCCA	2 cut(s)	341, 705
MluI	ACGCGT	1 cut(s)	113
MluNI	TGGCCA	2 cut(s)	341, 705
MmeI	TCCRAC	2 cut(s)	42, 978
MnlI	CCTC	8 cut(s)	132, 213, 430, 439, 489, 1015, 1063, 1178
Mox20I	TGGCCA	2 cut(s)	341, 705
MscI	TGGCCA	2 cut(s)	341, 705
MseI	TTAA	4 cut(s)	255, 360, 905, 933
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	2 cut(s)	341, 705
MspR9I	CCNGG	1 cut(s)	343
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	5 cut(s)	31, 40, 347, 515, 686
NcoI	CCATGG	1 cut(s)	992
NdeII	GATC	4 cut(s)	12, 761, 1122, 1153
NlaIII	CATG	5 cut(s)	86, 211, 350, 809, 996
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	1177
PkrI	GCNGC	2 cut(s)	511, 615
PshBI	ATTAAT	1 cut(s)	933
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	24, 229
PstNI	CAGNNNCTG	1 cut(s)	1202
PsuI	RGATCY	1 cut(s)	761
RsaI	GTAC	1 cut(s)	1100
RsaNI	GTAC	1 cut(s)	1099
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	255, 360, 905, 933
SatI	GCNGC	2 cut(s)	510, 614
Sau3AI	GATC	4 cut(s)	12, 761, 1122, 1153
Sau96I	GGNCC	2 cut(s)	24, 229
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	144, 1192
SfaNI	GCATC	4 cut(s)	477, 833, 895, 1189
SfcI	CTRYAG	4 cut(s)	28, 546, 849, 1210
SfiI	GGCCNNNNNGGCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	350
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	44, 617, 1076, 1181
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	2 cut(s)	531, 992
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	2 cut(s)	1013, 1056
TfiI	GAWTC	1 cut(s)	1177
Tru1I	TTAA	4 cut(s)	255, 360, 905, 933
Tru9I	TTAA	4 cut(s)	255, 360, 905, 933
TscAI	CASTG	2 cut(s)	391, 495
TseI	GCWGC	2 cut(s)	509, 613
TspDTI	ATGAA	9 cut(s)	71, 224, 267, 338, 386, 425, 443, 755, 1235
TspRI	CASTG	2 cut(s)	391, 495
VneI	GTGCAC	1 cut(s)	1188
VspI	ATTAAT	1 cut(s)	933
XagI	CCTNNNNNAGG	1 cut(s)	655
XapI	RAATTY	5 cut(s)	65, 309, 831, 982, 1146
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	921, 1110
XspI	CTAG	4 cut(s)	44, 617, 1076, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.