Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012552

Physical Location & Seq

Genomic Coordinates Forward (+)

48713181 .. 48714018

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0365500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTTTAAGAACCTGCATGCTTATAATCTTTTGATGCTGTCTAAACAAGGTTGGAGGTTACTTCATAAACCTACTTCTCTTATTGCCAGATTGTATAAGGCTCGTTACTATCCAGATTGCTCTTTTTTAGAGGCTAATATGGGAGAGGCTCCCTCTTTTGCATGGAGAAGCATTATGGATGCACGCCCGGTTGGGTCGGGTAGGGATATAAATATTTGGAATGATGATTGGATTCCTAATGTTCCCAGCCATAATCTTCATCAGCCTAGCCATTGCAATATTCACTCGGTCTCTGATCTTATTCATTTGGAAAGCAAAACTTGGAAGAGAGAACTTCTTCAAGATTTATTTTCTGAGGAGGTTCAGGCAGCTATATTATGCATTCCTTTGAGTTTTCGTCATACTCGAGATCGTTTAACATGGAAGCTTGATCGAAAGGGTTTCTTTTCAGTAAAGTCTGCATATTGGGTTGCTCGAGATTTTGTGATAGGGAGCTCTCTTTCCTCTACCTCTCTTGGGGATCCATTTAGCATGCTATGGAAAACCTTGTGGAAAGCCAAGGTTCCAGGAATGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010035 GO:0010038 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

194

Amino Acids

22.39

Weight (kDa)

9.32

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07590
fragaria_vesca	FvH4_3g36060 FvH4_3g36060
malus_domestica	MD11G1109000.v1.1
prunus_persica	Prupe.6G077700_v2.0.a1
pyrus_communis	pycom11g09010
rosa_chinensis	RchiOBHm_Chr5g0064501
rosa_laevigata	RLG00000035729
rosa_multiflora	Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002
rosa_roxburghii	Rroxscaffold_1G00016520
rosa_rugosa	Rorug05G0365500 Rorug05G0365600
rosa_samantha	Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300
rosa_wichuraiana	Rw5G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	518, 531
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	3 cut(s)	374, 430, 498
AluI	AGCT	3 cut(s)	374, 430, 498
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	518, 531
Ama87I	CYCGRG	2 cut(s)	408, 477
ApeKI	GCWGC	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	408, 477
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	191, 570
BmeT110I	CYCGRG	2 cut(s)	408, 477
BmiI	GGNNCC	3 cut(s)	153, 525, 567
BmrFI	CCNGG	2 cut(s)	191, 570
BmsI	GCATC	3 cut(s)	27, 172, 568
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpuMI	CCSGG	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	187, 583
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	2 cut(s)	408, 477
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	2 cut(s)	408, 477
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	298, 412, 433, 523
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	153, 525, 567
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	518, 531
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	298, 412, 433, 523
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	570
Bst6I	CTCTTC	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	21, 187, 536
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	187, 583
BstKTI	GATC	4 cut(s)	301, 415, 436, 526
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	298, 412, 433, 523
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	23, 538
BstSCI	CCNGG	2 cut(s)	189, 568
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BtsCI	GGATG	2 cut(s)	187, 583
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	21, 187, 536
CviAII	CATG	4 cut(s)	20, 165, 423, 535
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	4 cut(s)	300, 414, 435, 525
DpnII	GATC	4 cut(s)	298, 412, 433, 523
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	408, 477
EcoICRI	GAGCTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	23, 168, 426, 538
FalI	AAGNNNNNCTT	4 cut(s)	307, 339, 431, 463
FatI	CATG	4 cut(s)	19, 164, 422, 534
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	4 cut(s)	23, 168, 426, 538
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	298, 358
Hpy188III	TCNNGA	4 cut(s)	116, 344, 410, 479
HpyCH4V	TGCA	6 cut(s)	19, 164, 185, 279, 384, 464
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	23, 168, 426, 538
Kzo9I	GATC	4 cut(s)	298, 412, 433, 523
LmnI	GCTCC	2 cut(s)	157, 495
LpnPI	CCDG	7 cut(s)	29, 103, 129, 204, 262, 353, 555
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	3 cut(s)	27, 172, 568
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	60, 107
MalI	GATC	4 cut(s)	300, 414, 435, 525
MboI	GATC	4 cut(s)	298, 412, 433, 523
MboII	GAAGA	3 cut(s)	251, 332, 340
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	51, 127, 142, 166, 352, 355, 517, 523
Mph1103I	ATGCAT	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	2 cut(s)	9, 419
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	191, 570
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	570
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	4 cut(s)	298, 412, 433, 523
NlaIII	CATG	4 cut(s)	23, 168, 426, 538
NlaIV	GGNNCC	3 cut(s)	153, 525, 567
NsiI	ATGCAT	1 cut(s)	386
NspI	RCATGY	2 cut(s)	23, 538
PaeI	GCATGC	2 cut(s)	23, 538
PaeR7I	CTCGAG	2 cut(s)	408, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	568
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	153, 525, 567
PsuI	RGATCY	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	9, 419
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	298, 412, 433, 523
ScrFI	CCNGG	2 cut(s)	191, 570
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	3 cut(s)	27, 172, 568
Sfr274I	CTCGAG	2 cut(s)	408, 477
SlaI	CTCGAG	2 cut(s)	408, 477
SmlI	CTYRAG	2 cut(s)	408, 477
SmoI	CTYRAG	2 cut(s)	408, 477
SphI	GCATGC	2 cut(s)	23, 538
SspI	AATATT	2 cut(s)	217, 283
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	189, 568
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	3 cut(s)	409, 436, 478
TaqII	GACCGA	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	9, 419
Tru9I	TTAA	2 cut(s)	9, 419
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	56, 251, 296
XceI	RCATGY	2 cut(s)	23, 538
XhoI	CTCGAG	2 cut(s)	408, 477
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.