AT1G07790

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019125
Physical Location & Seq
Forward (+)
2412938 .. 2413790
853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07790.1

Sequence Viewer

Length: 447 bp
ATGGCACCAAGAGCCGAGAAGAAGCCCGCCGAGAAAAAAACCGCCGCTGAGAGACCGGTGGAAGAGAACAAGGCTGCTGAAAAGGCTCCGGCGGAGAAGAAACCCAAGGCGGGGAAGAAATTGCCACCAAAGGAAGCCGGTGACAAGAAGAAGAAGCGATCTAAGAAAAACGTCGAAACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGATATCGGAATTTCAAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAGCTAGCTCAGGAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGCGAGATCCAGACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACCAAGGCGGTTACCAAGTTTACTAGCTCTTGA

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

10.05

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 48 - 124 9.5e-21 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 78 - 147 4.4e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07790 AT5G22880
malus_domestica MD00G1105600.v1.1 MD03G1128400.v1.1 MD05G1239800.v1.1 MD11G1149100.v1.1
prunus_persica Prupe.6G113500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073431

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 2 cut(s) 4, 413
AccII CGCG 1 cut(s) 348
AciI CCGC 6 cut(s) 27, 42, 45, 92, 110, 422
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 2 cut(s) 227, 429
AfaI GTAC 2 cut(s) 320, 415
AfiI CCNNNNNNNGG 3 cut(s) 110, 111, 227
AgeI ACCGGT 1 cut(s) 55
AgsI TTSAA 2 cut(s) 199, 237
AluBI AGCT 3 cut(s) 289, 293, 441
AluI AGCT 3 cut(s) 289, 293, 441
Alw26I GTCTC 3 cut(s) 46, 361, 409
AlwI GGATC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 231
AsiGI ACCGGT 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 263
Asp718I GGTACC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 2 cut(s) 152, 395
AsuII TTCGAA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 289
BanI GGYRCC 2 cut(s) 4, 413
BbvI GCAGC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 375, 386
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 3 cut(s) 46, 361, 409
BfaI CTAG 3 cut(s) 290, 315, 438
BfuAI ACCTGC 1 cut(s) 202
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 45, 75
BlsI GCNGC 2 cut(s) 46, 76
Bme1390I CCNGG 1 cut(s) 381
BmiI GGNNCC 3 cut(s) 6, 87, 415
BmrFI CCNGG 1 cut(s) 381
BmtI GCTAGC 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 4 cut(s) 105, 246, 379, 417
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 111, 227
Bse118I RCCGGY 2 cut(s) 55, 137
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 105, 246, 379, 417
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 110, 111, 227
BseMII CTCAG 2 cut(s) 39, 308
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 348
BshNI GGYRCC 2 cut(s) 4, 413
BshTI ACCGGT 1 cut(s) 55
BsiSI CCGG 4 cut(s) 56, 89, 138, 381
BslI CCNNNNNNNGG 3 cut(s) 110, 111, 227
BsmAI GTCTC 3 cut(s) 46, 361, 409
BsmBI CGTCTC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 3 cut(s) 158, 186, 351
Bsp19I CCATGG 1 cut(s) 246
Bsp68I TCGCGA 1 cut(s) 348
BspACI CCGC 6 cut(s) 27, 42, 45, 92, 110, 422
BspCNI CTCAG 2 cut(s) 40, 307
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 6, 87, 415
BspMI ACCTGC 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 346
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 4, 413
BspTNI GGTCTC 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 55, 137
BssAI RCCGGY 2 cut(s) 55, 137
BssECI CCNNGG 4 cut(s) 105, 246, 379, 417
BssMI GATC 3 cut(s) 158, 186, 351
BssT1I CCWWGG 3 cut(s) 105, 246, 417
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 27, 291
BstDEI CTNAG 3 cut(s) 48, 162, 294
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 348
BstKTI GATC 3 cut(s) 161, 189, 354
BstMAI GTCTC 3 cut(s) 46, 361, 409
BstMBI GATC 3 cut(s) 158, 186, 351
BstMWI GCNNNNNNNGC 3 cut(s) 11, 83, 398
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 186, 351
BstYI RGATCY 2 cut(s) 186, 351
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 217
BtuMI TCGCGA 1 cut(s) 348
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 27, 291
Cfr10I RCCGGY 2 cut(s) 55, 137
Csp6I GTAC 2 cut(s) 319, 414
CspAI ACCGGT 1 cut(s) 55
CviAII CATG 1 cut(s) 247
CviQI GTAC 2 cut(s) 319, 414
DdeI CTNAG 3 cut(s) 48, 162, 294
DpnI GATC 3 cut(s) 160, 188, 353
DpnII GATC 3 cut(s) 158, 186, 351
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 107
Eco130I CCWWGG 3 cut(s) 105, 246, 417
Eco31I GGTCTC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 227, 429
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 105, 246, 417
ErhI CCWWGG 3 cut(s) 105, 246, 417
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 248, 257, 278
FatI CATG 1 cut(s) 246
FauI CCCGC 2 cut(s) 34, 103
Fnu4HI GCNGC 2 cut(s) 45, 75
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 45, 75
FspBI CTAG 3 cut(s) 290, 315, 438
GluI GCNGC 2 cut(s) 45, 75
HapII CCGG 4 cut(s) 56, 89, 138, 381
Hin1II CATG 1 cut(s) 250
HinfI GANTC 2 cut(s) 299, 369
HpaII CCGG 4 cut(s) 56, 89, 138, 381
HphI GGTGA 2 cut(s) 152, 395
Hpy166II GTNNAC 2 cut(s) 386, 435
Hpy188I TCNGA 2 cut(s) 230, 409
Hpy188III TCNNGA 6 cut(s) 221, 283, 296, 347, 355, 444
Hpy8I GTNNAC 2 cut(s) 386, 435
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 83, 398
HpyF3I CTNAG 3 cut(s) 48, 162, 294
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 250
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 3 cut(s) 158, 186, 351
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 69, 102, 151, 197, 234, 281, 368, 394
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 3 cut(s) 290, 315, 438
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 140, 424
MalI GATC 3 cut(s) 160, 188, 353
MboI GATC 3 cut(s) 158, 186, 351
MboII GAAGA 8 cut(s) 31, 74, 109, 127, 160, 163, 187, 294
MflI RGATCY 2 cut(s) 186, 351
MluCI AATT 2 cut(s) 119, 231
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 4 cut(s) 56, 89, 138, 381
MspR9I CCNGG 1 cut(s) 381
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 11, 83, 398
NciI CCSGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 246
NdeII GATC 3 cut(s) 158, 186, 351
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 3 cut(s) 6, 87, 415
NmeAIII GCCGAG 2 cut(s) 40, 55
NmuCI GTSAC 1 cut(s) 140
NruI TCGCGA 1 cut(s) 348
NspV TTCGAA 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 2 cut(s) 46, 76
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 424
PspN4I GGNNCC 3 cut(s) 6, 87, 415
PsuI RGATCY 2 cut(s) 186, 351
RruI TCGCGA 1 cut(s) 348
RsaI GTAC 2 cut(s) 320, 415
RsaNI GTAC 2 cut(s) 319, 414
SatI GCNGC 2 cut(s) 45, 75
Sau3AI GATC 3 cut(s) 158, 186, 351
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 381
SetI ASST 9 cut(s) 174, 182, 204, 216, 291, 295, 320, 415, 443
SfuI TTCGAA 1 cut(s) 305
Sse9I AATT 2 cut(s) 119, 231
SsiI CCGC 6 cut(s) 27, 42, 45, 92, 110, 422
SspMI CTAG 3 cut(s) 290, 315, 438
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 3 cut(s) 105, 246, 417
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 174, 282, 305
TasI AATT 2 cut(s) 119, 231
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 299
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 206, 256, 272
XapI RAATTY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 3 cut(s) 290, 315, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.