RchiOBHm_Chr5g0073431

histone H2B.1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
79460919 .. 79461110
192 bp
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UTR
Exon/CDS
Intron
PRQ34831

Sequence Viewer

Length: 192 bp
ATGAACAGCTTCATCAATGACATCTTCGAGAAGCTTGCTCAGGAGTCGTCGAGGCTCGCTAGGTACAACAAGAAGCCGACGATTACTTCCCGGGAGATCCAGACGGCGTTGAGGCTTGTGCTTCCCGGTGAATTGGCTAAGCATGCTGTTTTTGAGGGGACTAAGGTGGTGACCAAGTTCACAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.11

Weight (kDa)

9.87

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 1 - 39 4.5e-09 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 5 - 61 3.3e-06 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AfaI GTAC 1 cut(s) 65
AluBI AGCT 3 cut(s) 9, 34, 186
AluI AGCT 3 cut(s) 9, 34, 186
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 3 cut(s) 91, 92, 126
AsuHPI GGTGA 2 cut(s) 140, 181
AvaI CYCGRG 1 cut(s) 90
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BcnI CCSGG 3 cut(s) 91, 92, 126
BfaI CTAG 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 138
Bme1390I CCNGG 3 cut(s) 91, 92, 126
BmeT110I CYCGRG 1 cut(s) 90
BmrFI CCNGG 3 cut(s) 91, 92, 126
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 3 cut(s) 91, 92, 126
BsaJI CCNNGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 91, 126
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 1 cut(s) 96
Bsp1720I GCTNAGC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 36, 57, 144
BstDEI CTNAG 3 cut(s) 39, 138, 162
BstEII GGTNACC 1 cut(s) 169
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 89, 90, 124
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 36, 57, 144
Cfr9I CCCGGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 143
CviJI RGCY 7 cut(s) 9, 34, 55, 76, 115, 137, 186
CviKI_1 RGCY 7 cut(s) 9, 34, 55, 76, 115, 137, 186
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 39, 138, 162
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
FaeI CATG 1 cut(s) 146
FaiI YATR 1 cut(s) 144
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 142
FspBI CTAG 1 cut(s) 60
HapII CCGG 2 cut(s) 91, 126
Hin1II CATG 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 91, 126
HphI GGTGA 2 cut(s) 140, 181
Hpy166II GTNNAC 1 cut(s) 180
Hpy188III TCNNGA 4 cut(s) 28, 41, 100, 189
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 2 cut(s) 52, 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 39, 138, 162
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 4 cut(s) 26, 104, 113, 139
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 96
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 3 cut(s) 45, 105, 148
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 2 cut(s) 91, 126
MspR9I CCNGG 3 cut(s) 91, 92, 126
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 3 cut(s) 91, 92, 126
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 96
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 3 cut(s) 91, 92, 126
SetI ASST 5 cut(s) 11, 36, 65, 168, 188
SmaI CCCGGG 1 cut(s) 92
SphI GCATGC 1 cut(s) 146
Sse9I AATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 89, 90, 124
TaqI TCGA 2 cut(s) 27, 50
TasI AATT 1 cut(s) 131
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 90
XceI RCATGY 1 cut(s) 146
XmaI CCCGGG 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.