AT5G22880

Belongs to the histone H2B family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
7651868 .. 7652714
847 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22880.1

Sequence Viewer

Length: 438 bp
ATGGCGAAGGCAGATAAGAAACCAGCGGAGAAGAAACCGGCAGAGAAAACTCCGGCAGCCGAACCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAACCAGCCGGCGCCGGAGACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTGCTGGTGAGTCTTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAAGTTTACGAGTTCTTAG

Protein Analysis

145

Amino Acids

15.73

Weight (kDa)

10.05

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 121 4.7e-20 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 75 - 144 1.5e-06 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 4 cut(s) 26, 74, 353, 413
AclI AACGTT 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 95, 218
AgsI TTSAA 2 cut(s) 190, 199
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 3 cut(s) 126, 161, 352
ApeKI GCWGC 3 cut(s) 56, 68, 71
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 299, 367
AsuII TTCGAA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 68, 80, 83
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 3 cut(s) 126, 161, 352
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 129
BglII AGATCT 1 cut(s) 177
BisI GCNGC 4 cut(s) 57, 69, 72, 75
BlsI GCNGC 4 cut(s) 58, 70, 73, 76
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 117, 127
BmrFI CCNGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 2 cut(s) 211, 393
Bpu14I TTCGAA 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 218
Bse118I RCCGGY 2 cut(s) 37, 122
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 95, 218
BseXI GCAGC 3 cut(s) 68, 80, 83
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 5 cut(s) 38, 53, 96, 123, 129
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 95, 218
BsmAI GTCTC 3 cut(s) 126, 161, 352
BsmFI GGGAC 1 cut(s) 418
Bsp119I TTCGAA 1 cut(s) 296
Bsp143I GATC 2 cut(s) 149, 177
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 4 cut(s) 26, 74, 353, 413
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 117, 127
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 125
BsrFI RCCGGY 2 cut(s) 37, 122
BssAI RCCGGY 2 cut(s) 37, 122
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 149, 177
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 124, 303
BstDEI CTNAG 2 cut(s) 408, 435
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 152, 180
BstMAI GTCTC 3 cut(s) 126, 161, 352
BstMBI GATC 2 cut(s) 149, 177
BstMWI GCNNNNNNNGC 3 cut(s) 65, 74, 389
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 68, 80, 83
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 124, 303
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 2 cut(s) 37, 122
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 238, 247, 389
CviJI RGCY 6 cut(s) 59, 95, 122, 236, 301, 322
CviKI_1 RGCY 6 cut(s) 59, 95, 122, 236, 301, 322
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 408, 435
DinI GGCGCC 1 cut(s) 127
DpnI GATC 2 cut(s) 151, 179
DpnII GATC 2 cut(s) 149, 177
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 237
Eco32I GATATC 2 cut(s) 217, 268
Eco57I CTGAAG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 2 cut(s) 217, 268
EcoT14I CCWWGG 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 241, 250, 392
FaiI YATR 4 cut(s) 172, 239, 248, 390
FaqI GGGAC 1 cut(s) 418
FatI CATG 3 cut(s) 237, 246, 388
Fnu4HI GCNGC 4 cut(s) 57, 69, 72, 75
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 57, 69, 72, 75
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 57, 69, 72, 75
GsuI CTGGAG 2 cut(s) 211, 393
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 5 cut(s) 38, 53, 96, 123, 129
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 241, 250, 392
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 4 cut(s) 222, 243, 290, 343
HpaII CCGG 5 cut(s) 38, 53, 96, 123, 129
HphI GGTGA 2 cut(s) 299, 367
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 3 cut(s) 221, 348, 400
Hpy188III TCNNGA 3 cut(s) 109, 212, 247
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 106, 395
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 74, 389
HpyF3I CTNAG 2 cut(s) 408, 435
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 241, 250, 392
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 149, 177
Lsp1109I GCAGC 3 cut(s) 68, 80, 83
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 151, 179
MboI GATC 2 cut(s) 149, 177
MboII GAAGA 8 cut(s) 43, 94, 151, 154, 157, 169, 178, 285
MflI RGATCY 1 cut(s) 177
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 254
MspA1I CMGCKG 2 cut(s) 26, 74
MspI CCGG 5 cut(s) 38, 53, 96, 123, 129
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 65, 74, 389
NaeI GCCGGC 1 cut(s) 124
NarI GGCGCC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 237
NdeII GATC 2 cut(s) 149, 177
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 3 cut(s) 241, 250, 392
NlaIV GGNNCC 2 cut(s) 117, 127
NspI RCATGY 1 cut(s) 392
NspV TTCGAA 1 cut(s) 296
PagI TCATGA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 302, 425
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 222, 243, 343
PkrI GCNGC 4 cut(s) 58, 70, 73, 76
PleI GAGTC 1 cut(s) 298
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 117, 127
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 4 cut(s) 57, 69, 72, 75
Sau3AI GATC 2 cut(s) 149, 177
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 372
SetI ASST 4 cut(s) 165, 195, 303, 311
SfoI GGCGCC 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 296
SsiI CCGC 4 cut(s) 26, 74, 353, 413
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 296
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 222, 243, 343
TseI GCWGC 3 cut(s) 56, 68, 71
TspDTI ATGAA 3 cut(s) 197, 247, 263
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.