AT1G07980

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009988
Physical Location & Seq
Reverse (-)
2473165 .. 2475128
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07980.2

Sequence Viewer

Length: 621 bp
ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAAGCGAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAACGAAGAAGACGTCGAACAAGGTTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACTCTGTGGAAGAAGCAATAAGAGGCGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGAGGGGTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAAGAGGACGATGGAGGCGCGGAAGATGCTAAGATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTATTTCTTGTCAACAAAGCCACGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACACCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGAGGCATGACAGATGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

206

Amino Acids

23.03

Weight (kDa)

9.57

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 109 - 170 3.4e-21 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 436
AccII CGCG 2 cut(s) 308, 581
AciI CCGC 4 cut(s) 308, 349, 436, 579
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 2 cut(s) 261, 482
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 2 cut(s) 107, 225
AluBI AGCT 2 cut(s) 84, 452
AluI AGCT 2 cut(s) 84, 452
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 261, 482
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 110, 278
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 4 cut(s) 353, 387, 524, 558
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 82, 579
BlsI GCNGC 2 cut(s) 83, 580
BmeT110I CYCGRG 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 3 cut(s) 304, 382, 601
BpiI GAAGAC 2 cut(s) 110, 278
BsaHI GRCGYC 2 cut(s) 107, 225
BsaJI CCNNGG 2 cut(s) 21, 417
BsaWI WCCGGW 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 21, 417
BseGI GGATG 3 cut(s) 397, 486, 506
BseMII CTCAG 2 cut(s) 171, 392
BseRI GAGGAG 2 cut(s) 52, 366
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 2 cut(s) 308, 581
BshFI GGCC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 87, 140
BsnI GGCC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 557
Bsp143I GATC 3 cut(s) 153, 321, 351
BspACI CCGC 4 cut(s) 308, 349, 436, 579
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 2 cut(s) 170, 391
BspFNI CGCG 2 cut(s) 308, 581
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 21, 417
BssMI GATC 3 cut(s) 153, 321, 351
BssNI GRCGYC 2 cut(s) 107, 225
BssT1I CCWWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 2 cut(s) 107, 225
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 3 cut(s) 157, 318, 378
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 397, 486, 506
BstFNI CGCG 2 cut(s) 308, 581
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 3 cut(s) 156, 324, 354
BstMBI GATC 3 cut(s) 153, 321, 351
BstMWI GCNNNNNNNGC 3 cut(s) 231, 314, 578
BstUI CGCG 2 cut(s) 308, 581
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 2 cut(s) 110, 278
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 417
BtgZI GCGATG 2 cut(s) 57, 216
BtsCI GGATG 3 cut(s) 397, 486, 506
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 616
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 308
CseI GACGC 1 cut(s) 214
CviAII CATG 2 cut(s) 355, 604
CviJI RGCY 6 cut(s) 84, 139, 416, 452, 578, 618
CviKI_1 RGCY 6 cut(s) 84, 139, 416, 452, 578, 618
DdeI CTNAG 3 cut(s) 157, 318, 378
DpnI GATC 3 cut(s) 155, 323, 353
DpnII GATC 3 cut(s) 153, 321, 351
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 2 cut(s) 358, 607
FaiI YATR 4 cut(s) 356, 386, 456, 605
FatI CATG 2 cut(s) 354, 603
Fnu4HI GCNGC 2 cut(s) 82, 579
FokI GGATG 3 cut(s) 404, 473, 493
Fsp4HI GCNGC 2 cut(s) 82, 579
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 82, 579
HaeIII GGCC 1 cut(s) 578
HapII CCGG 2 cut(s) 87, 140
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 2 cut(s) 107, 225
Hin1II CATG 2 cut(s) 358, 607
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 2 cut(s) 121, 409
HindII GTYRAC 2 cut(s) 121, 409
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 4 cut(s) 161, 176, 337, 343
HpaI GTTAAC 1 cut(s) 121
HpaII CCGG 2 cut(s) 87, 140
Hpy166II GTNNAC 3 cut(s) 77, 121, 409
Hpy188I TCNGA 7 cut(s) 72, 160, 267, 333, 342, 381, 445
Hpy188III TCNNGA 5 cut(s) 93, 229, 287, 355, 557
Hpy8I GTNNAC 3 cut(s) 77, 121, 409
Hpy99I CGWCG 4 cut(s) 53, 112, 230, 271
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 388, 545, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 314, 578
HpyF3I CTNAG 3 cut(s) 157, 318, 378
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 2 cut(s) 107, 225
Hsp92II CATG 2 cut(s) 358, 607
HspAI GCGC 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 153, 321, 351
LmnI GCTCC 3 cut(s) 39, 89, 379
LpnPI CCDG 6 cut(s) 100, 106, 153, 374, 539, 600
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 3 cut(s) 304, 382, 601
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 4 cut(s) 173, 218, 242, 518
MalI GATC 3 cut(s) 155, 323, 353
MbiI CCGCTC 1 cut(s) 436
MboI GATC 3 cut(s) 153, 321, 351
MflI RGATCY 1 cut(s) 153
MluCI AATT 3 cut(s) 261, 367, 482
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 50, 290, 564
MseI TTAA 2 cut(s) 120, 567
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 2 cut(s) 87, 140
MvnI CGCG 2 cut(s) 308, 581
MwoI GCNNNNNNNGC 3 cut(s) 231, 314, 578
NdeII GATC 3 cut(s) 153, 321, 351
NlaIII CATG 2 cut(s) 358, 607
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 173
PagI TCATGA 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 3 cut(s) 161, 337, 343
PkrI GCNGC 2 cut(s) 83, 580
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 2 cut(s) 120, 567
SatI GCNGC 2 cut(s) 82, 579
Sau3AI GATC 3 cut(s) 153, 321, 351
SchI GAGTC 1 cut(s) 170
SetI ASST 5 cut(s) 86, 110, 120, 454, 504
SfaNI GCATC 3 cut(s) 304, 382, 601
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 3 cut(s) 261, 367, 482
SsiI CCGC 4 cut(s) 308, 349, 436, 579
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 110
TaqI TCGA 3 cut(s) 110, 167, 286
TasI AATT 3 cut(s) 261, 367, 482
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 3 cut(s) 161, 337, 343
Tru1I TTAA 2 cut(s) 120, 567
Tru9I TTAA 2 cut(s) 120, 567
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 350, 418, 475
TspGWI ACGGA 4 cut(s) 261, 434, 454, 499
TspRI CASTG 1 cut(s) 178
XapI RAATTY 2 cut(s) 261, 482
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.