Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009988

Physical Location & Seq

Genomic Coordinates Forward (+)

27946098 .. 27948763

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAACTTAAAACTAAAAGCCCAAAACCACAGCACCAATCATTTCTCAGGCCGAACCTGTCGATCAAAAACACTTTTGAGGAAGCTCAGTTCAGCTCCCAAACAATGGCGACCCCAAAGAAAGCCACACCCCCGAAGAAAACCAAAGAAACCAAGAAGCCAAGCACCAAAATCAGCAAACCCAGCAGCACCCAGAAGAAAGAAGACAACAAAACCAAAAAGAAAACCAGCAATGGCACCGCCGCGGCTGCGAAATCCCCGAGCTCAAAGTCTCAGAAGAGCAGAGCGCAAAATGGGGCCAAAACTACGAAACCACCCACCCCGAAATCCAAGCAGAACGGAAAGCGAGTCAAAGAGGAAGAGGTCGACGAGAAAGAGGATGTGAAGTCTTATACTTTTCCGATGGAGCGGGTTAAGAGGATTGTAAGGGAAGATGATTCCGACTTGCGCATTAGCTCTGACGCCGTTTTTCTAATCAACAAAGCCACCGAGAAGTTTCTGGAGAAGTTTTCTGAAGATGCCCATAAATGTTGTGTTAGGGATCGCAAGAAGGCTCTTGCTTACAAGCACCTATCCTCAGTCGTTGGCAAAATGAAGAGATATGAGTTTCTTTCAGATTTTGTTCCTGAGAAAATAAAAGCCGGGGATGCATTGGCAAAGAGAAAACAAGTTCAAGACGGAACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

230

Amino Acids

25.8

Weight (kDa)

10.04

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	118 - 194	1.1e-11	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	132 - 195	5.4e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07980 AT1G07980
fragaria_vesca	FvH4_3g32640
malus_domestica	MD03G1114400.v1.1
prunus_persica	Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059711
rosa_laevigata	RLG00000035322
rosa_multiflora	Rmu_sc0000660.1_g000043 Rmu_sc0033761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020900
rosa_rugosa	Rorug05G0324300 Rorug05G0324400
rosa_samantha	Rh5AG389800 Rh5BG401400 Rh5CG425500 Rh5DG417800
rosa_wichuraiana	Rw5G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	240, 243, 245, 409
AclWI	GGATC	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	674
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	86, 96, 264, 456, 687
AluI	AGCT	5 cut(s)	86, 96, 264, 456, 687
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	50, 297
ApeKI	GCWGC	2 cut(s)	186, 248
AspLEI	GCGC	2 cut(s)	289, 450
AspS9I	GGNCC	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	198, 235
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	449
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	688
BisI	GCNGC	4 cut(s)	187, 243, 246, 249
BlsI	GCNGC	4 cut(s)	188, 244, 247, 250
Bme1390I	CCNGG	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	238, 298
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	2 cut(s)	508, 637
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	243, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	243, 642
BseGI	GGATG	2 cut(s)	385, 652
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	5 cut(s)	61, 101, 287, 591, 618
BseXI	GCAGC	2 cut(s)	198, 235
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	52, 299
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	52, 299
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	63, 541
BspACI	CCGC	4 cut(s)	240, 243, 245, 409
BspANI	GGCC	2 cut(s)	52, 299
BspCNI	CTCAG	5 cut(s)	60, 100, 286, 590, 619
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	238, 298
BspPI	GGATC	1 cut(s)	549
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	243, 642
BssMI	GATC	2 cut(s)	63, 541
BssNI	GRCGYC	1 cut(s)	462
Bst6I	CTCTTC	3 cut(s)	272, 354, 590
BstACI	GRCGYC	1 cut(s)	462
BstDEI	CTNAG	5 cut(s)	47, 87, 273, 577, 627
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	385, 652
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	289, 450
BstKTI	GATC	2 cut(s)	66, 544
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	63, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 248, 647
BstSCI	CCNGG	1 cut(s)	641
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	198, 235
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	52, 299
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	385, 652
CfoI	GCGC	2 cut(s)	289, 450
Cfr13I	GGNCC	1 cut(s)	297
Cfr42I	CCGCGG	1 cut(s)	246
CseI	GACGC	1 cut(s)	470
DdeI	CTNAG	5 cut(s)	47, 87, 273, 577, 627
DpnI	GATC	2 cut(s)	65, 543
DpnII	GATC	2 cut(s)	63, 541
Eam1104I	CTCTTC	3 cut(s)	272, 354, 590
EarI	CTCTTC	3 cut(s)	272, 354, 590
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	266
FaiI	YATR	3 cut(s)	393, 525, 603
FauI	CCCGC	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	187, 243, 246, 249
FokI	GGATG	2 cut(s)	392, 659
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	187, 243, 246, 249
FspBI	CTAG	1 cut(s)	688
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	2 cut(s)	288, 449
GluI	GCNGC	4 cut(s)	187, 243, 246, 249
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	52, 299
HapII	CCGG	1 cut(s)	642
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	289, 450
Hin1I	GRCGYC	1 cut(s)	462
Hin6I	GCGC	2 cut(s)	287, 448
HinP1I	GCGC	2 cut(s)	287, 448
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	348, 437
HpaII	CCGG	1 cut(s)	642
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	6 cut(s)	276, 402, 442, 460, 514, 616
Hpy188III	TCNNGA	3 cut(s)	500, 626, 674
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	544
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 248, 647
HpyF3I	CTNAG	5 cut(s)	47, 87, 273, 577, 627
Hsp92I	GRCGYC	1 cut(s)	462
HspAI	GCGC	2 cut(s)	287, 448
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	63, 541
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	101, 406
LpnPI	CCDG	8 cut(s)	34, 71, 196, 206, 241, 485, 639, 655
Lsp1109I	GCAGC	2 cut(s)	198, 235
LweI	GCATC	2 cut(s)	508, 637
MaeI	CTAG	1 cut(s)	688
MalI	GATC	2 cut(s)	65, 543
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	2 cut(s)	63, 541
MboII	GAAGA	8 cut(s)	148, 208, 215, 289, 371, 443, 527, 607
MhlI	GDGCHC	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	73, 349, 355, 370, 411, 586
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	2 cut(s)	9, 414
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	183, 248, 647
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	2 cut(s)	63, 541
NlaIV	GGNNCC	2 cut(s)	238, 298
NsbI	TGCGCA	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	437
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	188, 244, 247, 250
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	238, 298
PspPI	GGNCC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	365
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	9, 414
SatI	GCNGC	4 cut(s)	187, 243, 246, 249
Sau3AI	GATC	2 cut(s)	63, 541
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	8 cut(s)	60, 88, 98, 266, 366, 458, 573, 689
SfaNI	GCATC	2 cut(s)	508, 637
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SsiI	CCGC	4 cut(s)	240, 243, 245, 409
SspMI	CTAG	1 cut(s)	688
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	641
TaqI	TCGA	2 cut(s)	62, 366
TauI	GCSGC	2 cut(s)	245, 248
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	9, 414
Tru9I	TTAA	2 cut(s)	9, 414
TseI	GCWGC	2 cut(s)	186, 248
TspDTI	ATGAA	2 cut(s)	17, 608
TspGWI	ACGGA	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.