Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009988

Physical Location & Seq

Genomic Coordinates Forward (+)

10000827 .. 10003142

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1114400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGACCCCCAAAAAGGACACACCGCCAAATAAAACCAAAGAAGCAAAGAAGCCGAGCACCAAATCCCCACCGCCGAAGAAAAACCAGCAAACAAAGAAGCCGACCACCGCCAAGGCAAAAACCCCTGAGAAAAAGAAGCCGAGCAGCGCCAAGAAATCCACCAACATAAACAAGATCACCAGCAACGGAAATGCGAGAGAATCCGACGTAGAGGCGGTTCCGTCGCCGAGCTCCGAGTCCCGGAGAGGCGCAGAGCAGAATGGGGGTAAATTTACGAAAACGCCCACCCCGAAGTCGAAGAAGGGCACGGAGAAAGGAAAGCGAAAGCGAGAGGGGGAGGTCGCAGATGAAGAGGAGGTGAAGGCGTATACGTTTCCGATGGAACGTGTGAGAAGGATTATCAGAAGCGAGTATTCGGATTTGCGGATTAGCAACGACGCCGTTTTCCTCATCAACAAAGCCACCGAGAAGTTTCTGGAGAAGTTCTGTGAAGAATCACATGCGTGCTGTGTTAAGGACCGGAGGAAGGCTATTGCTTACAAGCACCTAGCCACAGTTGTTTCTAAACGAAAGAGATACGACTTCCTTTCAGATTACGTTCCGGAGAAGGTAAAAGCCGAGGATGCATTGGCAAAGAGAAAGTTAGCCGAAGCAAAAGCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

9.97

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	110 - 188	6.3e-10	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	125 - 188	7.9e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07980 AT1G07980
fragaria_vesca	FvH4_3g32640
malus_domestica	MD03G1114400.v1.1
prunus_persica	Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1 Prupe.6G099600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059711
rosa_laevigata	RLG00000035322
rosa_multiflora	Rmu_sc0000660.1_g000043 Rmu_sc0033761.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020900
rosa_rugosa	Rorug05G0324300 Rorug05G0324400
rosa_samantha	Rh5AG389800 Rh5BG401400 Rh5CG425500 Rh5DG417800
rosa_wichuraiana	Rw5G036680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	604
AciI	CCGC	5 cut(s)	26, 74, 111, 218, 427
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	441
AfiI	CCNNNNNNNGG	3 cut(s)	16, 243, 529
AflIII	ACRYGT	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	505
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
Alw21I	GWGCWC	2 cut(s)	62, 236
Aor13HI	TCCGGA	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	152, 254
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	172, 373
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	62, 236
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	114, 621
BsaWI	WCCGGW	2 cut(s)	522, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 243, 529
BseAI	TCCGGA	1 cut(s)	604
BseDI	CCNNGG	2 cut(s)	114, 621
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	16, 243, 529
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	62, 236
BsiSI	CCGG	3 cut(s)	244, 523, 605
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	16, 243, 529
BsmFI	GGGAC	1 cut(s)	226
Bsp1286I	GDGCHC	3 cut(s)	62, 236, 311
Bsp13I	TCCGGA	1 cut(s)	604
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	26, 74, 111, 218, 427
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	114, 621
BssMI	GATC	1 cut(s)	177
BssNAI	GTATAC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	152, 254
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	159
BstZ17I	GTATAC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	508
CfoI	GCGC	2 cut(s)	152, 254
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	1 cut(s)	449
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	9 cut(s)	55, 103, 142, 234, 464, 533, 554, 620, 650
CviKI_1	RGCY	9 cut(s)	55, 103, 142, 234, 464, 533, 554, 620, 650
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	506
FaiI	YATR	3 cut(s)	170, 372, 504
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	2 cut(s)	151, 253
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	153
HapII	CCGG	3 cut(s)	244, 523, 605
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	152, 254
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	150, 252
HinP1I	GCGC	2 cut(s)	150, 252
HinfI	GANTC	3 cut(s)	203, 239, 497
HpaII	CCGG	3 cut(s)	244, 523, 605
HphI	GGTGA	2 cut(s)	172, 373
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	6 cut(s)	208, 238, 381, 407, 421, 595
Hpy188III	TCNNGA	2 cut(s)	479, 605
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	3 cut(s)	212, 229, 443
HpyAV	CCTTC	5 cut(s)	298, 358, 390, 523, 604
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	4 cut(s)	210, 374, 388, 600
HpyCH4V	TGCA	1 cut(s)	629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	4 cut(s)	210, 374, 388, 600
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	150, 252
Kpn2I	TCCGGA	1 cut(s)	604
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	101, 141, 196, 257, 464, 536, 618, 648
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	4 cut(s)	210, 374, 388, 600
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	4 cut(s)	91, 313, 365, 506
MhlI	GDGCHC	3 cut(s)	62, 236, 311
MluCI	AATT	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	9 cut(s)	208, 242, 328, 334, 349, 352, 461, 519, 616
Mph1103I	ATGCAT	1 cut(s)	631
MroI	TCCGGA	1 cut(s)	604
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	505
MspI	CCGG	3 cut(s)	244, 523, 605
MspR9I	CCNGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	626
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	506
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	4 cut(s)	81, 168, 255, 646
NsiI	ATGCAT	1 cut(s)	631
NspI	RCATGY	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	203, 497
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	520
PsrI	GAACNNNNNNTAC	2 cut(s)	204, 236
RseI	CAYNNNNRTG	1 cut(s)	505
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	3 cut(s)	62, 236, 311
SetI	ASST	9 cut(s)	213, 236, 345, 363, 377, 391, 552, 603, 615
SfaNI	GCATC	1 cut(s)	616
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	505
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	5 cut(s)	26, 74, 111, 218, 427
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	4 cut(s)	213, 377, 391, 603
TaqI	TCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	203, 497
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	3 cut(s)	204, 213, 326
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.