AT1G08460

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012923
Physical Location & Seq
Forward (+)
2672198 .. 2674721
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08460.2

Sequence Viewer

Length: 1134 bp
ATGGTTACCAATCGCGTAGACGTCTTCTGGCACGAAGGAATGCTCCGACACGACGCCGTAGAAGGCGTCTTCGACACTGGATACGACCCTGGATTCCTCGACGTATTGGAGAAGCACCCGGAGAACGCCGATCGCGTCAGGAACATGCTTTCGATTCTCCGACGCGGTCCCATCGCTCCTCATGTCAATTGGTTTACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAATTGCCGCAGGTACTTTCATGAGCCCAGGCTCGTGGGAAGCTGCTCTTCTTGCAGCTGGAACAACTCTTTCAGCAATGCAACATATTCTTGATTGCCATGGGAAAATTGCATATGCTCTGGTACGCCCACCAGGTCACCACTCACAGCCTACTCAGGCTGATGGGTATTGCTTCCTCAACAACGCTGCTCTTGCTGTCAAGCTGGCATTGAATTCGGGTTCTTGTTCCCGAGTTGCGGTTATTGACATCGATGTACATTATGGAAATGGCACAGCTGAAGGGTTTTATACATCTGATAAGGTTCTTACGGTGTCACTCCATATGAACCATGGATCATGGGGATCGTCCCACCCGCAGAAAGGGTCGATTGATGAACTTGGTGAAGACGTGGGATTGGGTTACAATCTGAATGTCCCTTTACCGAATGGCACGGGTGACCGGGGATATGAATATGCCATGAATGAGCTGGTGGTTCCTGCAGTTAGAAGGTTTGGACCCGATATGGTTGTTCTCGTTGTTGGTCAAGACTCTAGCGCTTTTGATCCAAACGGGAGACAAAGCCTGACAATGAATGGATACAGAAGGATTGGGCAGATAATGAGGGGAGTTGCAGAGGAGCACAGCCATGGAAGGTTGCTTATGGTGCAAGAAGGCGGGTATCATGTAACATATGCAGCTTACTGCCTCCACGCCATGCTCGAAGGGGTGCTGAAGATTCCAGAACCGCATCTATCTGATCCGATCGCTTATTATCCCGAAGAAGAAGCTAATGCTGTTGCTGCTGTGGAGTCAATCAAAACATATCACACCGAATTTGTTCCATTTCTCAGAGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

377

Amino Acids

41.26

Weight (kDa)

5.43

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 39 - 277 3.7e-68 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 18
AccII CGCG 3 cut(s) 15, 135, 165
AciI CCGC 6 cut(s) 165, 300, 530, 647, 948, 1019
AclWI GGATC 4 cut(s) 634, 643, 830, 1025
AcsI RAATTY 2 cut(s) 505, 1106
AcuI CTGAAG 3 cut(s) 225, 591, 1025
AcyI GRCGYC 3 cut(s) 21, 54, 66
AfaI GTAC 4 cut(s) 248, 307, 417, 549
AfeI AGCGCT 1 cut(s) 829
AfiI CCNNNNNNNGG 2 cut(s) 529, 653
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 505
AjiI CACGTC 1 cut(s) 682
AjnI CCWGG 3 cut(s) 88, 319, 424
AluBI AGCT 9 cut(s) 223, 259, 335, 350, 496, 569, 760, 971, 1061
AluI AGCT 9 cut(s) 223, 259, 335, 350, 496, 569, 760, 971, 1061
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 4 cut(s) 634, 643, 830, 1025
Ama87I CYCGRG 1 cut(s) 522
Aor51HI AGCGCT 1 cut(s) 829
ApeKI GCWGC 5 cut(s) 335, 347, 479, 968, 1073
ApoI RAATTY 2 cut(s) 505, 1106
AsiGI ACCGGT 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 1 cut(s) 830
AspS9I GGNCC 2 cut(s) 167, 788
AsuC2I CCSGG 2 cut(s) 119, 734
AsuHPI GGTGA 3 cut(s) 422, 686, 740
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 2 cut(s) 167, 788
BanII GRGCYC 1 cut(s) 320
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 4 cut(s) 16, 61, 194, 684
Bbv12I GWGCWC 1 cut(s) 915
BbvI GCAGC 5 cut(s) 322, 359, 466, 980, 1060
BccI CCATC 2 cut(s) 179, 449
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 4 cut(s) 198, 232, 489, 523
BciT130I CCWGG 3 cut(s) 90, 321, 426
BciVI GTATCC 2 cut(s) 74, 863
BcnI CCSGG 2 cut(s) 119, 734
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 2 cut(s) 260, 825
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 2 cut(s) 74, 863
BisI GCNGC 6 cut(s) 300, 336, 348, 480, 969, 1074
BlsI GCNGC 6 cut(s) 301, 337, 349, 481, 970, 1075
Bme1390I CCNGG 5 cut(s) 90, 119, 321, 426, 734
Bme18I GGWCC 2 cut(s) 167, 788
BmeT110I CYCGRG 1 cut(s) 522
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 167, 788
BmiI GGNNCC 3 cut(s) 169, 768, 790
BmrFI CCNGG 5 cut(s) 90, 119, 321, 426, 734
BmsI GCATC 1 cut(s) 1030
BpiI GAAGAC 4 cut(s) 16, 61, 194, 684
BpuMI CCSGG 2 cut(s) 119, 734
Bsa29I ATCGAT 1 cut(s) 543
BsaHI GRCGYC 3 cut(s) 21, 54, 66
BsaJI CCNNGG 6 cut(s) 88, 319, 391, 622, 733, 919
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 653
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 3 cut(s) 90, 321, 426
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 6 cut(s) 88, 319, 391, 622, 733, 919
BseLI CCNNNNNNNGG 2 cut(s) 529, 653
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 168, 923
BseXI GCAGC 5 cut(s) 322, 359, 466, 980, 1060
Bsh1236I CGCG 3 cut(s) 15, 135, 165
Bsh1285I CGRYCG 2 cut(s) 133, 1038
BshTI ACCGGT 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 543
BsiEI CGRYCG 2 cut(s) 133, 1038
BsiHKAI GWGCWC 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 3 cut(s) 119, 198, 733
BslFI GGGAC 3 cut(s) 153, 625, 692
BslI CCNNNNNNNGG 2 cut(s) 529, 653
BsmAI GTCTC 1 cut(s) 841
BsmFI GGGAC 3 cut(s) 153, 625, 692
BsmI GAATGC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 320, 915
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
Bsp19I CCATGG 3 cut(s) 391, 622, 919
BspACI CCGC 6 cut(s) 165, 300, 530, 647, 948, 1019
BspCNI CTCAG 2 cut(s) 460, 1134
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 3 cut(s) 15, 135, 165
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 169, 768, 790
BspMAI CTGCAG 1 cut(s) 775
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 4 cut(s) 634, 643, 830, 1025
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 547
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 6 cut(s) 88, 319, 391, 622, 733, 919
BssMI GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
BssNI GRCGYC 3 cut(s) 21, 54, 66
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 3 cut(s) 391, 622, 919
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 3 cut(s) 90, 321, 426
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 3 cut(s) 21, 54, 66
BstAUI TGTACA 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 447, 1121
BstDSI CCRYGG 3 cut(s) 391, 622, 919
BstEII GGTNACC 3 cut(s) 4, 428, 728
BstFNI CGCG 3 cut(s) 15, 135, 165
BstH2I RGCGCY 1 cut(s) 831
BstHHI GCGC 1 cut(s) 830
BstKTI GATC 6 cut(s) 133, 629, 638, 838, 1033, 1038
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
BstMCI CGRYCG 2 cut(s) 133, 1038
BstMWI GCNNNNNNNGC 4 cut(s) 344, 485, 937, 1073
BstNI CCWGG 3 cut(s) 90, 321, 426
BstNSI RCATGY 1 cut(s) 148
BstPI GGTNACC 3 cut(s) 4, 428, 728
BstSCI CCNGG 5 cut(s) 88, 117, 319, 424, 732
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 3 cut(s) 15, 135, 165
BstV1I GCAGC 5 cut(s) 322, 359, 466, 980, 1060
BstV2I GAAGAC 4 cut(s) 16, 61, 194, 684
BstXI CCANNNNNNTGG 1 cut(s) 327
Bsu15I ATCGAT 1 cut(s) 543
BsuI GTATCC 2 cut(s) 74, 863
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 3 cut(s) 391, 622, 919
BtgZI GCGATG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 682
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 498
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 830
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 167, 788
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 4 cut(s) 55, 62, 124, 171
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 4 cut(s) 247, 306, 416, 548
CspAI ACCGGT 1 cut(s) 197
CviQI GTAC 4 cut(s) 247, 306, 416, 548
DdeI CTNAG 2 cut(s) 447, 1121
DpnI GATC 6 cut(s) 132, 628, 637, 837, 1032, 1037
DpnII GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 3 cut(s) 391, 622, 919
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 167, 788
Eco47III AGCGCT 1 cut(s) 829
Eco57I CTGAAG 3 cut(s) 225, 591, 1025
Eco88I CYCGRG 1 cut(s) 522
Eco91I GGTNACC 3 cut(s) 4, 428, 728
EcoO65I GGTNACC 3 cut(s) 4, 428, 728
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 3 cut(s) 88, 319, 424
EcoT14I CCWWGG 3 cut(s) 391, 622, 919
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 3 cut(s) 391, 622, 919
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 3 cut(s) 153, 625, 692
FauI CCCGC 2 cut(s) 654, 941
FauNDI CATATG 3 cut(s) 406, 615, 964
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 6 cut(s) 300, 336, 348, 480, 969, 1074
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 6 cut(s) 300, 336, 348, 480, 969, 1074
FspBI CTAG 2 cut(s) 260, 825
GlaI GCGC 1 cut(s) 829
GluI GCNGC 6 cut(s) 300, 336, 348, 480, 969, 1074
HaeII RGCGCY 1 cut(s) 831
HapII CCGG 3 cut(s) 119, 198, 733
HgaI GACGC 4 cut(s) 55, 62, 124, 171
HhaI GCGC 1 cut(s) 830
Hin1I GRCGYC 3 cut(s) 21, 54, 66
Hin6I GCGC 1 cut(s) 828
HinP1I GCGC 1 cut(s) 828
HinfI GANTC 5 cut(s) 93, 154, 821, 1009, 1082
HpaII CCGG 3 cut(s) 119, 198, 733
HphI GGTGA 3 cut(s) 422, 686, 740
Hpy166II GTNNAC 2 cut(s) 19, 195
Hpy188I TCNGA 9 cut(s) 47, 161, 220, 244, 589, 702, 1030, 1035, 1124
Hpy188III TCNNGA 8 cut(s) 139, 279, 313, 383, 522, 818, 1013, 1049
Hpy8I GTNNAC 2 cut(s) 19, 195
Hpy99I CGWCG 3 cut(s) 56, 104, 165
HpyAV CCTTC 8 cut(s) 29, 56, 566, 774, 870, 918, 938, 989
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4IV ACGT 3 cut(s) 21, 102, 681
HpyCH4V TGCA 7 cut(s) 347, 373, 404, 773, 905, 940, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 485, 937, 1073
HpyF3I CTNAG 2 cut(s) 447, 1121
HpySE526I ACGT 3 cut(s) 21, 102, 681
Hsp92I GRCGYC 3 cut(s) 21, 54, 66
HspAI GCGC 1 cut(s) 828
Kzo9I GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 4 cut(s) 48, 181, 220, 910
Lsp1109I GCAGC 5 cut(s) 322, 359, 466, 980, 1060
LweI GCATC 1 cut(s) 1030
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 2 cut(s) 260, 825
MaeII ACGT 3 cut(s) 21, 102, 681
MaeIII GTNAC 6 cut(s) 4, 428, 606, 692, 728, 958
MalI GATC 6 cut(s) 132, 628, 637, 837, 1032, 1037
MboI GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
MboII GAAGA 8 cut(s) 16, 61, 194, 332, 689, 1018, 1064, 1067
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 320, 915
MluCI AATT 5 cut(s) 187, 294, 399, 505, 1106
MlyI GAGTC 2 cut(s) 815, 1091
MmeI TCCRAC 2 cut(s) 70, 184
MnlI CCTC 8 cut(s) 107, 189, 259, 479, 888, 901, 989, 1118
MroXI GAANNNNTTC 1 cut(s) 1110
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 350, 569
MspI CCGG 3 cut(s) 119, 198, 733
MspR9I CCNGG 5 cut(s) 90, 119, 321, 426, 734
MunI CAATTG 1 cut(s) 187
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 3 cut(s) 90, 321, 426
MvnI CGCG 3 cut(s) 15, 135, 165
MwoI GCNNNNNNNGC 4 cut(s) 344, 485, 937, 1073
NciI CCSGG 2 cut(s) 119, 734
NcoI CCATGG 3 cut(s) 391, 622, 919
NdeI CATATG 3 cut(s) 406, 615, 964
NdeII GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
NlaIV GGNNCC 3 cut(s) 169, 768, 790
NmuCI GTSAC 3 cut(s) 428, 606, 728
NspI RCATGY 1 cut(s) 148
PagI TCATGA 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 990
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 3 cut(s) 93, 154, 1009
PflFI GACNNNGTC 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 197
PkrI GCNGC 6 cut(s) 301, 337, 349, 481, 970, 1075
Ple19I CGATCG 2 cut(s) 133, 1038
PleI GAGTC 2 cut(s) 815, 1090
PpsI GAGTC 2 cut(s) 815, 1090
Psp6I CCWGG 3 cut(s) 88, 319, 424
PspEI GGTNACC 3 cut(s) 4, 428, 728
PspGI CCWGG 3 cut(s) 88, 319, 424
PspN4I GGNNCC 3 cut(s) 169, 768, 790
PspPI GGNCC 2 cut(s) 167, 788
PstI CTGCAG 1 cut(s) 775
PsyI GACNNNGTC 1 cut(s) 165
PvuI CGATCG 2 cut(s) 133, 1038
PvuII CAGCTG 2 cut(s) 350, 569
RsaI GTAC 4 cut(s) 248, 307, 417, 549
RsaNI GTAC 4 cut(s) 247, 306, 416, 548
RseI CAYNNNNRTG 1 cut(s) 918
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 6 cut(s) 300, 336, 348, 480, 969, 1074
Sau3AI GATC 6 cut(s) 130, 626, 635, 835, 1030, 1035
Sau96I GGNCC 2 cut(s) 167, 788
SchI GAGTC 2 cut(s) 815, 1091
ScrFI CCNGG 5 cut(s) 90, 119, 321, 426, 734
SduI GDGCHC 2 cut(s) 320, 915
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 1 cut(s) 1030
SfcI CTRYAG 1 cut(s) 771
SinI GGWCC 2 cut(s) 167, 788
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 5 cut(s) 187, 294, 399, 505, 1106
SsiI CCGC 6 cut(s) 165, 300, 530, 647, 948, 1019
SspMI CTAG 2 cut(s) 260, 825
StyD4I CCNGG 5 cut(s) 88, 117, 319, 424, 732
StyI CCWWGG 3 cut(s) 391, 622, 919
TaaI ACNGT 1 cut(s) 604
TaiI ACGT 3 cut(s) 24, 105, 684
TaqI TCGA 6 cut(s) 72, 99, 152, 543, 659, 993
TasI AATT 5 cut(s) 187, 294, 399, 505, 1106
TatI WGTACW 2 cut(s) 246, 547
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 3 cut(s) 93, 154, 1009
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 3 cut(s) 428, 606, 728
TseI GCWGC 5 cut(s) 335, 347, 479, 968, 1073
Tsp45I GTSAC 3 cut(s) 428, 606, 728
TspDTI ATGAA 6 cut(s) 301, 632, 681, 756, 767, 878
TspRI CASTG 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 167, 788
XapI RAATTY 2 cut(s) 505, 1106
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 2 cut(s) 620, 757
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 2 cut(s) 260, 825
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.