pycom03g10870

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012923
Physical Location & Seq
Reverse (-)
10192233 .. 10194182
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10870.3

Sequence Viewer

Length: 1149 bp
ATGGCTGCTTTAACTGCTACTGCCCCAACTGAACGAATACATGTATTCTGGCACGAGGGCATGCTCAACCACGACTCCGGCCATGGAGTATTCGACACTGGAATGGATCCTGGTTTTCTAGACGTTCTAGAAAAGCACCCAGAGAACTCTGACAGAATCAAAAACATGGTTTCTATTCTAAAAAGAGGTCCCATCTCACCCTACATATCTTGGGTTCCTGGAAGGCCTGCTCTGCTCTCTGAATTGCTCTCTTTCCACTCTCCAGAATACATAAATGAGCTAGTTGAAGCAGATAGAGATGGGGGTAAGATGCTATGTACCGGCACTTTCTTGAACCCTGGCTCATGGGATGCCTCGCTCCTTGCTGCCGGTACTACATTATCAGCAATGAAGCATGTACTTGATGGACCCGGAAAAATTTCTTATGCATTGGTTAGGCCTCCGGGTCACCATGCTCAGCCTACACAAGCTGATGGCTACTGCTTCCTTAACAATGCCGGTCTTGCTGTTCAATTGGCTTTAAATTCTGGCTGTGCAAAGGTTGCAGTCATAGACATCGATGTTCATTATGGAAATGGGACTGCCGAGGGGTTTTATCGGTCTGATAAAGTTCTTACAATCTCCCTTCACATGAATCATGGTTCCTGGGGCCCTTCTCACCCACAAACTGGCTCTGTTGAGGAGCTCGGTGAAGGGGAAGGGTTAGGTTATAATTTGAATATACCTCTGCCAAATGGGACAGGGGACCAAGGATATGGACATGCCATGACTGAGTTGGTTGTCCCTTCAGTCGGAAAGTTTGAACCTGAAATGATAGTTCTGGTCATTGGCCAAGATTCAAGTGCGTTTGATCCAAATGGAAGGCAATGCTTGACAATGGAGGGTTATAAAGAGATTGGCCGGATGGTTCGGGGCCTGGTGGATAGACACTGCAGAGGACGTCTTCTGATTGTCCAAGAAGGTGGATATCATGTTACCTACTCAGCCTATTGTCTTCATGCAACACTTGAAGGTGTGCTTAACCTACCAGTTTCTTTATTATCTGATCCCATTGCTTATTACCCAGAGGATAAGGCATTTGCTGTAGAAGTAATTAAATCTATAAAAAAGTTCCAGAAAGACAATGTACCGTTTTTAATTGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

383

Amino Acids

41.45

Weight (kDa)

5.46

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 711, 888
AatII GACGTC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 668
AclWI GGATC 4 cut(s) 101, 114, 845, 1040
AcoI YGGCCR 3 cut(s) 79, 829, 898
AcsI RAATTY 2 cut(s) 417, 523
AcuI CTGAAG 1 cut(s) 771
AcyI GRCGYC 1 cut(s) 940
AfaI GTAC 4 cut(s) 319, 373, 399, 1128
AfiI CCNNNNNNNGG 2 cut(s) 668, 791
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 8 cut(s) 287, 334, 512, 718, 803, 840, 1010, 1142
AjnI CCWGG 5 cut(s) 109, 217, 337, 644, 915
AluBI AGCT 3 cut(s) 280, 470, 685
AluI AGCT 3 cut(s) 280, 470, 685
Alw21I GWGCWC 1 cut(s) 687
AlwI GGATC 4 cut(s) 101, 114, 845, 1040
AoxI GGCC 7 cut(s) 79, 224, 437, 649, 829, 898, 913
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 2 cut(s) 5, 365
ApoI RAATTY 2 cut(s) 417, 523
Asp700I GAANNNNTTC 1 cut(s) 418
AspS9I GGNCC 6 cut(s) 188, 407, 649, 650, 745, 913
AsuC2I CCSGG 2 cut(s) 411, 444
AsuHPI GGTGA 4 cut(s) 189, 440, 650, 701
AvaII GGWCC 3 cut(s) 188, 407, 745
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 653, 687
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 2 cut(s) 935, 986
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 352
BccI CCATC 5 cut(s) 200, 293, 398, 467, 898
BciT130I CCWGG 5 cut(s) 111, 219, 339, 646, 917
BcnI CCSGG 2 cut(s) 411, 444
BfaI CTAG 3 cut(s) 119, 128, 281
BfmI CTRYAG 2 cut(s) 931, 1083
BisI GCNGC 2 cut(s) 6, 366
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 2 cut(s) 7, 367
Bme1390I CCNGG 7 cut(s) 111, 219, 339, 411, 444, 646, 917
Bme18I GGWCC 3 cut(s) 188, 407, 745
BmgT120I GGNCC 6 cut(s) 188, 407, 649, 650, 745, 913
BmiI GGNNCC 9 cut(s) 108, 190, 216, 409, 643, 650, 651, 746, 914
BmrFI CCNGG 7 cut(s) 111, 219, 339, 411, 444, 646, 917
BmsI GCATC 2 cut(s) 300, 340
BpiI GAAGAC 2 cut(s) 935, 986
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 456
BpuMI CCSGG 2 cut(s) 411, 444
Bsa29I ATCGAT 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 940
BsaJI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 791
Bse118I RCCGGY 3 cut(s) 320, 368, 497
Bse1I ACTGG 3 cut(s) 103, 673, 1028
Bse3DI GCAATG 3 cut(s) 393, 872, 1050
BseBI CCWGG 5 cut(s) 111, 219, 339, 646, 917
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BseGI GGATG 2 cut(s) 355, 909
BseLI CCNNNNNNNGG 2 cut(s) 668, 791
BseMI GCAATG 3 cut(s) 393, 872, 1050
BseMII CTCAG 3 cut(s) 470, 762, 996
BseNI ACTGG 3 cut(s) 103, 673, 1028
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 687
BsiSI CCGG 7 cut(s) 78, 321, 369, 411, 443, 498, 901
BslFI GGGAC 5 cut(s) 174, 592, 751, 758, 767
BslI CCNNNNNNNGG 2 cut(s) 668, 791
BsmFI GGGAC 5 cut(s) 174, 592, 751, 758, 767
BsnI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 653, 687
Bsp143I GATC 3 cut(s) 106, 850, 1045
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 82
BspANI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BspCNI CTCAG 3 cut(s) 469, 763, 995
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 9 cut(s) 108, 190, 216, 409, 643, 650, 651, 746, 914
BspMAI CTGCAG 1 cut(s) 935
BspPI GGATC 4 cut(s) 101, 114, 845, 1040
BsrDI GCAATG 3 cut(s) 393, 872, 1050
BsrFI RCCGGY 3 cut(s) 320, 368, 497
BsrI ACTGG 3 cut(s) 103, 673, 1028
BssAI RCCGGY 3 cut(s) 320, 368, 497
BssECI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BssMI GATC 3 cut(s) 106, 850, 1045
BssNI GRCGYC 1 cut(s) 940
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 82, 748
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 5 cut(s) 111, 219, 339, 646, 917
Bst4CI ACNGT 1 cut(s) 1131
BstACI GRCGYC 1 cut(s) 940
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 62, 228
BstDEI CTNAG 3 cut(s) 456, 771, 982
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 2 cut(s) 355, 909
BstKTI GATC 3 cut(s) 109, 853, 1048
BstMBI GATC 3 cut(s) 106, 850, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
BstNI CCWGG 5 cut(s) 111, 219, 339, 646, 917
BstNSI RCATGY 4 cut(s) 44, 64, 398, 764
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 7 cut(s) 109, 217, 337, 409, 442, 644, 915
BstSFI CTRYAG 2 cut(s) 931, 1083
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 935, 986
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 2 cut(s) 755, 962
BstYI RGATCY 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 355, 909
BtsI GCAGTG 1 cut(s) 928
BtsIMutI CAGTG 2 cut(s) 96, 928
Cac8I GCNNGC 2 cut(s) 62, 228
Cfr10I RCCGGY 3 cut(s) 320, 368, 497
Cfr13I GGNCC 6 cut(s) 188, 407, 649, 650, 745, 913
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 4 cut(s) 318, 372, 398, 1127
CviQI GTAC 4 cut(s) 318, 372, 398, 1127
DdeI CTNAG 3 cut(s) 456, 771, 982
DpnI GATC 3 cut(s) 108, 852, 1047
DpnII GATC 3 cut(s) 106, 850, 1045
DraI TTTAAA 1 cut(s) 522
EaeI YGGCCR 3 cut(s) 79, 829, 898
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 2 cut(s) 82, 748
Eco147I AGGCCT 2 cut(s) 226, 439
Eco24I GRGCYC 2 cut(s) 653, 687
Eco32I GATATC 1 cut(s) 968
Eco47I GGWCC 3 cut(s) 188, 407, 745
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 685
EcoO109I RGGNCCY 4 cut(s) 188, 649, 650, 913
EcoO65I GGTNACC 1 cut(s) 446
EcoRII CCWGG 5 cut(s) 109, 217, 337, 644, 915
EcoRV GATATC 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 82, 748
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 653, 687
ErhI CCWWGG 2 cut(s) 82, 748
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 5 cut(s) 174, 592, 751, 758, 767
Fnu4HI GCNGC 2 cut(s) 6, 366
FokI GGATG 2 cut(s) 362, 916
FriOI GRGCYC 2 cut(s) 653, 687
Fsp4HI GCNGC 2 cut(s) 6, 366
FspBI CTAG 3 cut(s) 119, 128, 281
GluI GCNGC 2 cut(s) 6, 366
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
HapII CCGG 7 cut(s) 78, 321, 369, 411, 443, 498, 901
Hin1I GRCGYC 1 cut(s) 940
HinfI GANTC 4 cut(s) 74, 156, 634, 836
HpaII CCGG 7 cut(s) 78, 321, 369, 411, 443, 498, 901
HphI GGTGA 4 cut(s) 189, 440, 650, 701
Hpy188I TCNGA 6 cut(s) 151, 241, 604, 794, 948, 1045
Hpy188III TCNNGA 5 cut(s) 119, 128, 263, 331, 1114
HpyAV CCTTC 9 cut(s) 216, 635, 663, 686, 692, 795, 855, 953, 1004
HpyCH4III ACNGT 1 cut(s) 1131
HpyCH4IV ACGT 2 cut(s) 123, 940
HpyCH4V TGCA 5 cut(s) 428, 536, 545, 933, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
HpyF3I CTNAG 3 cut(s) 456, 771, 982
HpySE526I ACGT 2 cut(s) 123, 940
Hsp92I GRCGYC 1 cut(s) 940
Kzo9I GATC 3 cut(s) 106, 850, 1045
LmnI GCTCC 2 cut(s) 363, 682
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 300, 340
MaeI CTAG 3 cut(s) 119, 128, 281
MaeII ACGT 2 cut(s) 123, 940
MaeIII GTNAC 2 cut(s) 446, 973
MalI GATC 3 cut(s) 108, 852, 1047
MboI GATC 3 cut(s) 106, 850, 1045
MboII GAAGA 2 cut(s) 935, 986
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 653, 687
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 772
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 418
MscI TGGCCA 1 cut(s) 831
MseI TTAA 7 cut(s) 11, 489, 521, 1020, 1095, 1136, 1147
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 7 cut(s) 78, 321, 369, 411, 443, 498, 901
MspR9I CCNGG 7 cut(s) 111, 219, 339, 411, 444, 646, 917
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 5 cut(s) 111, 219, 339, 646, 917
MwoI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
NciI CCSGG 2 cut(s) 411, 444
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 106, 850, 1045
NlaIV GGNNCC 9 cut(s) 108, 190, 216, 409, 643, 650, 651, 746, 914
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 446
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 4 cut(s) 44, 64, 398, 764
PaeI GCATGC 1 cut(s) 64
PceI AGGCCT 2 cut(s) 226, 439
PciI ACATGT 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 156, 634, 836
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 217
PkrI GCNGC 2 cut(s) 7, 367
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 188
PscI ACATGT 1 cut(s) 40
PsiI TTATAA 2 cut(s) 711, 888
Psp124BI GAGCTC 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 5 cut(s) 109, 217, 337, 644, 915
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 5 cut(s) 109, 217, 337, 644, 915
PspN4I GGNNCC 9 cut(s) 108, 190, 216, 409, 643, 650, 651, 746, 914
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 6 cut(s) 188, 407, 649, 650, 745, 913
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 4 cut(s) 319, 373, 399, 1128
RsaNI GTAC 4 cut(s) 318, 372, 398, 1127
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 687
SaqAI TTAA 7 cut(s) 11, 489, 521, 1020, 1095, 1136, 1147
SatI GCNGC 2 cut(s) 6, 366
Sau3AI GATC 3 cut(s) 106, 850, 1045
Sau96I GGNCC 6 cut(s) 188, 407, 649, 650, 745, 913
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 7 cut(s) 111, 219, 339, 411, 444, 646, 917
SduI GDGCHC 2 cut(s) 653, 687
SfaNI GCATC 2 cut(s) 300, 340
SfcI CTRYAG 2 cut(s) 931, 1083
SinI GGWCC 3 cut(s) 188, 407, 745
SmiMI CAYNNNNRTG 1 cut(s) 101
SphI GCATGC 1 cut(s) 64
Sse9I AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
SseBI AGGCCT 2 cut(s) 226, 439
SspMI CTAG 3 cut(s) 119, 128, 281
SstI GAGCTC 1 cut(s) 687
StuI AGGCCT 2 cut(s) 226, 439
StyD4I CCNGG 7 cut(s) 109, 217, 337, 409, 442, 644, 915
StyI CCWWGG 2 cut(s) 82, 748
TaaI ACNGT 1 cut(s) 1131
TaiI ACGT 2 cut(s) 126, 943
TaqI TCGA 2 cut(s) 93, 558
TaqII GACCGA 1 cut(s) 588
TasI AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 3 cut(s) 156, 634, 836
Tru1I TTAA 7 cut(s) 11, 489, 521, 1020, 1095, 1136, 1147
Tru9I TTAA 7 cut(s) 11, 489, 521, 1020, 1095, 1136, 1147
TscAI CASTG 2 cut(s) 103, 935
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 5, 365
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 404, 554, 647, 986
TspRI CASTG 2 cut(s) 103, 935
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 3 cut(s) 188, 407, 745
XapI RAATTY 2 cut(s) 417, 523
XbaI TCTAGA 2 cut(s) 118, 127
XceI RCATGY 4 cut(s) 44, 64, 398, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 3 cut(s) 119, 128, 281
ZraI GACGTC 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.