Prupe.6G143900_v2.0.a1

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012923
Physical Location & Seq
Reverse (-)
11662264 .. 11664376
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G143900.1

Sequence Viewer

Length: 1149 bp
ATGGCCGCTTCAACTGCGACTGCCCCAACTGACCGCATAGATGTGTTCTGGGAATCAGGCATGCTCAACCATAACTCAGGCAATGGAGTATTCGACACTGGAATGGATCCTGGGTTTCTGGATGTGTTAGAAAAGCACCCAGAGAACTCTGACAGAGTTAAAAACATGGTTTCTATTCTAAAGAGAGGCCCTATCTCTCCCTACATTTCTTGGCTCCCAGGAAGGCCTGCTCTGCTCTCTGAATTGCTCTCTTTCCACTCTTCAGAATACATAAATGAACTAGTTGAAGCGGATAGAGATGGGGGTAAGATGTTATGTGCTGGGACTTTCTTGAACCCTGGATCATGGGGTGCCTCGCTTCTTGCTGCCGGTACAACATTATCGGCAATGAAACATGTGCTTGATGGACATGGAAAAATTGCTTATGCATTGGTTAGGCCTCCGGGTCACCATGCTCAGCCTACTCGAGCTGATGGCTACTGCTTCCTTAACAATGCCGGTCTTGCTGTTCAATTCGCTTTAAATTCTGGATGCTCAAAGGTTGCGGTCATAGACATCGATGTCCATTATGGAAATGGGACTGCTGAGGGATTCTATAGGTCTGATAAGGTTCTCACAACCTCCCTTCATATGAATCATGGTTCATGGGGTCCATCTCACCCACAGAATGGCTCCGTTGATGAGCTTGGTGAAGCGGAGGGGTTTGGTTATAATTTGAATATACCTCTACCAAATGGGACCGGGGACCGTGGATACAGGCATGCCATGACTGAGTTGGTTGTCCTTGCAATCCAAAAGTTTGAGCCTGAAATGATGGTTCTGGTCATTGGCCAAGATTCAAGTGCTTTTGATCCAAATGGAAGGCAGTGTTTGACAATGGAGGGTTATCAAGAGATTGGCAGGATTGTTCGTAGCCTGGCGGACCGACACTGCAGTGGACGGCTTCTGATTGTCCAAGAAGGTGGATATCATGTTACCTACTCAGCCTATTGTCTCCATGCCACACTTGAAGGTGTGCTCAACCTACCAACTTGTCTATTATCTGATCCCATTGCTTATTACCCAGAGGATGAGGCATTGGCCGTGGAAGTTATTAAATCCATTAAAAAGTTCCAGAAAGACAATGTACCATTCTTAAAAGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

383

Amino Acids

41.38

Weight (kDa)

5.56

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AasI GACNNNNNNGTC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 668
AciI CCGC 6 cut(s) 6, 34, 290, 545, 695, 920
AclWI GGATC 5 cut(s) 101, 114, 349, 845, 1040
AcoI YGGCCR 3 cut(s) 3, 829, 1080
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 373, 1128
AfiI CCNNNNNNNGG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 7 cut(s) 12, 287, 334, 512, 718, 840, 1010
AhlI ACTAGT 1 cut(s) 280
AjnI CCWGG 4 cut(s) 109, 217, 337, 915
AleI CACNNNNGTG 1 cut(s) 933
AluBI AGCT 3 cut(s) 470, 685, 1145
AluI AGCT 3 cut(s) 470, 685, 1145
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 1 cut(s) 998
AlwI GGATC 5 cut(s) 101, 114, 349, 845, 1040
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 6 cut(s) 3, 187, 224, 437, 829, 1080
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 523
AspS9I GGNCC 5 cut(s) 188, 650, 738, 745, 922
AsuC2I CCSGG 2 cut(s) 444, 742
AsuHPI GGTGA 3 cut(s) 440, 650, 701
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 4 cut(s) 650, 738, 745, 922
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 1020
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 352
BccI CCATC 5 cut(s) 293, 398, 467, 661, 808
BceAI ACGGC 2 cut(s) 956, 1067
BciT130I CCWGG 4 cut(s) 111, 219, 339, 917
BciVI GTATCC 1 cut(s) 746
BcnI CCSGG 2 cut(s) 444, 742
BcoDI GTCTC 1 cut(s) 998
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 595, 931
BfuI GTATCC 1 cut(s) 746
BisI GCNGC 2 cut(s) 6, 366
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 2 cut(s) 7, 367
Bme1390I CCNGG 6 cut(s) 111, 219, 339, 444, 742, 917
Bme18I GGWCC 4 cut(s) 650, 738, 745, 922
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 5 cut(s) 188, 650, 738, 745, 922
BmiI GGNNCC 7 cut(s) 108, 215, 352, 651, 673, 739, 746
BmrFI CCNGG 6 cut(s) 111, 219, 339, 444, 742, 917
BmsI GCATC 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 456
BpuMI CCSGG 2 cut(s) 444, 742
Bsa29I ATCGAT 1 cut(s) 558
BsaJI CCNNGG 6 cut(s) 110, 217, 337, 741, 748, 1083
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse118I RCCGGY 2 cut(s) 368, 497
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 3 cut(s) 88, 393, 1050
BseBI CCWGG 4 cut(s) 111, 219, 339, 917
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 6 cut(s) 110, 217, 337, 741, 748, 1083
BseGI GGATG 3 cut(s) 127, 536, 1075
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMI GCAATG 3 cut(s) 88, 393, 1050
BseMII CTCAG 5 cut(s) 90, 470, 576, 762, 996
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 352
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 6 cut(s) 5, 189, 226, 439, 831, 1082
BshNI GGYRCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 4 cut(s) 369, 443, 498, 741
BslFI GGGAC 4 cut(s) 337, 592, 751, 758
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 998
BsmFI GGGAC 4 cut(s) 337, 592, 751, 758
BsnI GGCC 6 cut(s) 5, 189, 226, 439, 831, 1082
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp143I GATC 4 cut(s) 106, 341, 850, 1045
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 6 cut(s) 6, 34, 290, 545, 695, 920
BspANI GGCC 6 cut(s) 5, 189, 226, 439, 831, 1082
BspCNI CTCAG 5 cut(s) 89, 469, 577, 763, 995
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 7 cut(s) 108, 215, 352, 651, 673, 739, 746
BspMAI CTGCAG 1 cut(s) 935
BspPI GGATC 5 cut(s) 101, 114, 349, 845, 1040
BspT107I GGYRCC 1 cut(s) 350
BsrDI GCAATG 3 cut(s) 88, 393, 1050
BsrFI RCCGGY 2 cut(s) 368, 497
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 2 cut(s) 368, 497
BssECI CCNNGG 6 cut(s) 110, 217, 337, 741, 748, 1083
BssMI GATC 4 cut(s) 106, 341, 850, 1045
Bst2UI CCWGG 4 cut(s) 111, 219, 339, 917
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 62, 228, 762
BstDEI CTNAG 5 cut(s) 76, 456, 585, 771, 982
BstDSI CCRYGG 2 cut(s) 748, 1083
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 3 cut(s) 127, 536, 1075
BstKTI GATC 4 cut(s) 109, 344, 853, 1048
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 4 cut(s) 106, 341, 850, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 14, 232, 503
BstNI CCWGG 4 cut(s) 111, 219, 339, 917
BstNSI RCATGY 3 cut(s) 64, 398, 764
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 6 cut(s) 109, 217, 337, 442, 740, 915
BstSFI CTRYAG 2 cut(s) 595, 931
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 962
BstYI RGATCY 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 558
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 6 cut(s) 5, 189, 226, 439, 831, 1082
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 2 cut(s) 748, 1083
BtsCI GGATG 3 cut(s) 127, 536, 1075
BtsI GCAGTG 3 cut(s) 872, 928, 940
BtsIMutI CAGTG 4 cut(s) 96, 872, 928, 940
Cac8I GCNNGC 3 cut(s) 62, 228, 762
Cfr10I RCCGGY 2 cut(s) 368, 497
Cfr13I GGNCC 5 cut(s) 188, 650, 738, 745, 922
ClaI ATCGAT 1 cut(s) 558
CpoI CGGWCCG 1 cut(s) 922
Csp6I GTAC 2 cut(s) 372, 1127
CspI CGGWCCG 1 cut(s) 922
CviQI GTAC 2 cut(s) 372, 1127
DdeI CTNAG 5 cut(s) 76, 456, 585, 771, 982
DpnI GATC 4 cut(s) 108, 343, 852, 1047
DpnII GATC 4 cut(s) 106, 341, 850, 1045
DraI TTTAAA 1 cut(s) 522
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 3 cut(s) 3, 829, 1080
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
EciI GGCGGA 1 cut(s) 935
Eco147I AGGCCT 2 cut(s) 226, 439
Eco32I GATATC 1 cut(s) 968
Eco47I GGWCC 4 cut(s) 650, 738, 745, 922
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 446
EcoRII CCWGG 4 cut(s) 109, 217, 337, 915
EcoRV GATATC 1 cut(s) 968
EcoT22I ATGCAT 1 cut(s) 430
FaqI GGGAC 4 cut(s) 337, 592, 751, 758
FauNDI CATATG 1 cut(s) 630
Fnu4HI GCNGC 2 cut(s) 6, 366
FokI GGATG 3 cut(s) 134, 543, 1082
Fsp4HI GCNGC 2 cut(s) 6, 366
FspBI CTAG 1 cut(s) 281
GluI GCNGC 2 cut(s) 6, 366
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 6 cut(s) 5, 189, 226, 439, 831, 1082
HapII CCGG 4 cut(s) 369, 443, 498, 741
HinfI GANTC 4 cut(s) 53, 591, 634, 836
HpaII CCGG 4 cut(s) 369, 443, 498, 741
HphI GGTGA 3 cut(s) 440, 650, 701
Hpy166II GTNNAC 1 cut(s) 938
Hpy188I TCNGA 6 cut(s) 151, 241, 265, 604, 948, 1045
Hpy188III TCNNGA 5 cut(s) 119, 331, 528, 890, 1114
Hpy8I GTNNAC 1 cut(s) 938
HpyAV CCTTC 5 cut(s) 216, 635, 855, 953, 1004
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4V TGCA 3 cut(s) 428, 788, 933
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 232, 503
HpyF3I CTNAG 5 cut(s) 76, 456, 585, 771, 982
Kzo9I GATC 4 cut(s) 106, 341, 850, 1045
LmnI GCTCC 3 cut(s) 219, 677, 1142
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 521
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 446, 973
MalI GATC 4 cut(s) 108, 343, 852, 1047
MboI GATC 4 cut(s) 106, 341, 850, 1045
MboII GAAGA 1 cut(s) 252
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 1020
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 5 cut(s) 242, 417, 512, 523, 712
MluNI TGGCCA 1 cut(s) 831
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 430
MscI TGGCCA 1 cut(s) 831
MseI TTAA 7 cut(s) 159, 489, 521, 1095, 1104, 1136, 1147
MslI CAYNNNNRTG 3 cut(s) 41, 101, 933
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 4 cut(s) 369, 443, 498, 741
MspR9I CCNGG 6 cut(s) 111, 219, 339, 444, 742, 917
MvaI CCWGG 4 cut(s) 111, 219, 339, 917
MwoI GCNNNNNNNGC 3 cut(s) 14, 232, 503
NciI CCSGG 2 cut(s) 444, 742
NdeI CATATG 1 cut(s) 630
NdeII GATC 4 cut(s) 106, 341, 850, 1045
NlaIV GGNNCC 7 cut(s) 108, 215, 352, 651, 673, 739, 746
NmuCI GTSAC 1 cut(s) 446
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 64, 398, 764
OliI CACNNNNGTG 1 cut(s) 933
PaeI GCATGC 2 cut(s) 64, 764
PaeR7I CTCGAG 1 cut(s) 465
PceI AGGCCT 2 cut(s) 226, 439
PciI ACATGT 1 cut(s) 394
PfeI GAWTC 4 cut(s) 53, 591, 634, 836
PflMI CCANNNNNTGG 1 cut(s) 668
PkrI GCNGC 2 cut(s) 7, 367
PscI ACATGT 1 cut(s) 394
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 4 cut(s) 109, 217, 337, 915
PspEI GGTNACC 1 cut(s) 446
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 4 cut(s) 109, 217, 337, 915
PspN4I GGNNCC 7 cut(s) 108, 215, 352, 651, 673, 739, 746
PspPI GGNCC 5 cut(s) 188, 650, 738, 745, 922
PspXI VCTCGAGB 1 cut(s) 465
PstI CTGCAG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 2 cut(s) 373, 1128
RsaNI GTAC 2 cut(s) 372, 1127
RseI CAYNNNNRTG 3 cut(s) 41, 101, 933
Rsr2I CGGWCCG 1 cut(s) 922
RsrII CGGWCCG 1 cut(s) 922
SaqAI TTAA 7 cut(s) 159, 489, 521, 1095, 1104, 1136, 1147
SatI GCNGC 2 cut(s) 6, 366
Sau3AI GATC 4 cut(s) 106, 341, 850, 1045
Sau96I GGNCC 5 cut(s) 188, 650, 738, 745, 922
ScrFI CCNGG 6 cut(s) 111, 219, 339, 444, 742, 917
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 2 cut(s) 595, 931
Sfr274I CTCGAG 1 cut(s) 465
SinI GGWCC 4 cut(s) 650, 738, 745, 922
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 3 cut(s) 41, 101, 933
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
SpeI ACTAGT 1 cut(s) 280
SphI GCATGC 2 cut(s) 64, 764
Sse9I AATT 5 cut(s) 242, 417, 512, 523, 712
SseBI AGGCCT 2 cut(s) 226, 439
SsiI CCGC 6 cut(s) 6, 34, 290, 545, 695, 920
SspMI CTAG 1 cut(s) 281
StuI AGGCCT 2 cut(s) 226, 439
StyD4I CCNGG 6 cut(s) 109, 217, 337, 442, 740, 915
TaaI ACNGT 1 cut(s) 749
TaqI TCGA 3 cut(s) 93, 466, 558
TaqII GACCGA 1 cut(s) 939
TasI AATT 5 cut(s) 242, 417, 512, 523, 712
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 53, 591, 634, 836
Tru1I TTAA 7 cut(s) 159, 489, 521, 1095, 1104, 1136, 1147
Tru9I TTAA 7 cut(s) 159, 489, 521, 1095, 1104, 1136, 1147
TscAI CASTG 4 cut(s) 103, 872, 935, 940
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 5 cut(s) 291, 404, 617, 633, 647
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 4 cut(s) 103, 872, 935, 940
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 4 cut(s) 650, 738, 745, 922
XapI RAATTY 1 cut(s) 523
XceI RCATGY 3 cut(s) 64, 398, 764
XcmI CCANNNNNNNNNTGG 2 cut(s) 572, 772
XhoI CTCGAG 1 cut(s) 465
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.