Rroxscaffold_1G00033650

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012923
Physical Location & Seq
Reverse (-)
48773886 .. 48776161
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033650.1

Sequence Viewer

Length: 1134 bp
ATGGCTGCTTCAACTGAGCGCGTAGATGTGTTCTGGGACTCGGGTATGCTGAACCATAACTCGGGCACCGGAGTATTCGACACTGGAATGGATCCTGGATTCCTTGACGTGTTAGAAAAGCACCCAGAGAACTCTGATAGAGTCAAGAACATGGTTTCCATTCTAAGGCGCGGCCCAATCTCTCCCTACATTTCTTGGCTTCCTGGAAGACATGCCCTGCTTCCTGAATTGCTCTCTTTCCACTCTCCAGAGTACATAAATGAACTAGTTGAAGCAGATAAAGAGGGAGGTAAGATGCTATGTGCCGGGACTTTCTTGAACCCCGGCTCGTGGGATGCCTCCCTTCTTGCTGCCGGTACTACACTATCCGCAATGAAGCATGTGCTTGACGGAAATGGCAAAATTGCTTATGCATTGGTCAGGCCACCGGGTCACCATGCTCAGCCTACTCGAGCTGATGGCTACTGCTTCCTTAACAATGCTGGCCTAGCTGTTCAGCTTGCTTTAGACTCTGGCTGTGCAAAGGTCGCAGTGATAGACATTGATGTTCATTATGGCAATGGGACTGCAGAGGGGTTTTATCGGTCTGATAAGGTTCTTACAACTTCTCTTCATATGAATCATGGTACTTGGGGTCCATCTCATCCACAGAATGGCTCTATTCATGAGCTCGGTGAAGGGGAGGGCTTCGGTTATAATTTGAATATACCTTTGCCCAATGGGACAGGGGACCGAGGATATGTGTATGCTATGAACGAGTTGGTTGCCCCGGCAGTCAGAAAGTTTGAGCCTGAAATGATAGTTTTGGTCATTGGCCAAGATTCTAGTGCTTTTGATCCAAATGGAAGGCAATGTTTGACAATGGAGGGTTATCGCGAGATTGGCAAGATAGTTCGTAGCCTGGTGGATAGTCACTGTGGTGGACGTCTTCTGATTGTCCAAGAAGGTGGATATCACATTACGTACTCAGCCTATTGTCTTCATGCAACACTTGAGGGTGTGCTCAACCTACCGATTCCTTTGTTATCCGATCCCATTGCTTATTACCCTGAGGAGGAGCGATTATCTGTAGAACGTATTGAATACATTAAAAGGTTCCAGAAAGATACTGTACTGTTTTTGAAAGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

377

Amino Acids

41.24

Weight (kDa)

5.55

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 41 - 332 4.4e-83 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AatII GACGTC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 1 cut(s) 653
AccII CGCG 3 cut(s) 21, 171, 876
AciI CCGC 2 cut(s) 171, 369
AclWI GGATC 4 cut(s) 86, 99, 830, 1025
AcoI YGGCCR 1 cut(s) 814
AcyI GRCGYC 1 cut(s) 925
AfaI GTAC 5 cut(s) 254, 358, 628, 965, 1113
AfiI CCNNNNNNNGG 5 cut(s) 61, 165, 330, 653, 1054
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 12, 272, 319, 703, 1082, 1123
AhlI ACTAGT 1 cut(s) 265
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 3 cut(s) 94, 202, 900
AleI CACNNNNGTG 1 cut(s) 918
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 455, 491, 499, 670
AluI AGCT 4 cut(s) 455, 491, 499, 670
Alw21I GWGCWC 2 cut(s) 672, 1005
AlwI GGATC 4 cut(s) 86, 99, 830, 1025
Ama87I CYCGRG 3 cut(s) 40, 61, 450
AoxI GGCC 4 cut(s) 172, 422, 484, 814
ApeKI GCWGC 2 cut(s) 5, 350
AspLEI GCGC 2 cut(s) 21, 171
AspS9I GGNCC 3 cut(s) 173, 635, 730
AsuC2I CCSGG 4 cut(s) 307, 324, 429, 770
AsuHPI GGTGA 2 cut(s) 425, 686
AvaI CYCGRG 3 cut(s) 40, 61, 450
AvaII GGWCC 2 cut(s) 635, 730
AxyI CCTNAGG 1 cut(s) 1050
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 816
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 672
BauI CACGAG 1 cut(s) 328
BbsI GAAGAC 3 cut(s) 214, 920, 971
Bbv12I GWGCWC 2 cut(s) 672, 1005
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 452, 646
BcgI CGANNNNNNTGC 4 cut(s) 746, 780, 1019, 1053
BciT130I CCWGG 3 cut(s) 96, 204, 902
BcnI CCSGG 4 cut(s) 307, 324, 429, 770
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 3 cut(s) 266, 488, 825
BfmI CTRYAG 2 cut(s) 567, 1068
BisI GCNGC 3 cut(s) 6, 172, 351
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 7, 173, 352
Bme1390I CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
Bme18I GGWCC 2 cut(s) 635, 730
BmeT110I CYCGRG 3 cut(s) 40, 61, 450
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 173, 635, 730
BmiI GGNNCC 5 cut(s) 67, 93, 636, 731, 1097
BmrFI CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
BmsI GCATC 2 cut(s) 285, 325
BpiI GAAGAC 3 cut(s) 214, 920, 971
BpmI CTGGAG 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 4 cut(s) 307, 324, 429, 770
BsaAI YACGTR 1 cut(s) 963
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 3 cut(s) 322, 733, 768
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 165, 330, 653, 1054
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 1050
Bse3DI GCAATG 4 cut(s) 378, 565, 857, 1035
BseBI CCWGG 3 cut(s) 96, 204, 902
BseDI CCNNGG 3 cut(s) 322, 733, 768
BseGI GGATG 2 cut(s) 340, 643
BseLI CCNNNNNNNGG 5 cut(s) 61, 165, 330, 653, 1054
BseMI GCAATG 4 cut(s) 378, 565, 857, 1035
BseMII CTCAG 4 cut(s) 6, 455, 981, 1041
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 2 cut(s) 1067, 1070
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 337
Bsh1236I CGCG 3 cut(s) 21, 171, 876
BshFI GGCC 4 cut(s) 174, 424, 486, 816
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 672, 1005
BsiHKCI CYCGRG 3 cut(s) 40, 61, 450
BsiSI CCGG 6 cut(s) 69, 306, 324, 354, 428, 770
BslFI GGGAC 5 cut(s) 50, 322, 577, 736, 743
BslI CCNNNNNNNGG 5 cut(s) 61, 165, 330, 653, 1054
BsmFI GGGAC 5 cut(s) 50, 322, 577, 736, 743
BsnI GGCC 4 cut(s) 174, 424, 486, 816
BsoBI CYCGRG 3 cut(s) 40, 61, 450
Bsp1286I GDGCHC 3 cut(s) 68, 672, 1005
Bsp143I GATC 3 cut(s) 91, 835, 1030
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp68I TCGCGA 1 cut(s) 876
BspACI CCGC 2 cut(s) 171, 369
BspANI GGCC 4 cut(s) 174, 424, 486, 816
BspCNI CTCAG 4 cut(s) 7, 454, 980, 1042
BspFNI CGCG 3 cut(s) 21, 171, 876
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 5 cut(s) 67, 93, 636, 731, 1097
BspMAI CTGCAG 1 cut(s) 571
BspPI GGATC 4 cut(s) 86, 99, 830, 1025
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 378, 565, 857, 1035
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 322, 733, 768
BssMI GATC 3 cut(s) 91, 835, 1030
BssNI GRCGYC 1 cut(s) 925
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 3 cut(s) 96, 204, 902
Bst4CI ACNGT 3 cut(s) 917, 1111, 1116
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 925
BstBAI YACGTR 1 cut(s) 963
BstC8I GCNNGC 2 cut(s) 484, 501
BstDEI CTNAG 5 cut(s) 15, 164, 441, 967, 1050
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 2 cut(s) 340, 643
BstFNI CGCG 3 cut(s) 21, 171, 876
BstHHI GCGC 2 cut(s) 21, 171
BstKTI GATC 3 cut(s) 94, 838, 1033
BstMBI GATC 3 cut(s) 91, 835, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 488, 527, 882
BstNI CCWGG 3 cut(s) 96, 204, 902
BstNSI RCATGY 2 cut(s) 215, 383
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 7 cut(s) 94, 202, 305, 322, 427, 768, 900
BstSFI CTRYAG 2 cut(s) 567, 1068
BstSLI GKGCMC 1 cut(s) 68
BstSNI TACGTA 1 cut(s) 963
BstUI CGCG 3 cut(s) 21, 171, 876
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 3 cut(s) 214, 920, 971
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 1050
BsuRI GGCC 4 cut(s) 174, 424, 486, 816
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 340, 643
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 81, 537, 913
BtuMI TCGCGA 1 cut(s) 876
Cac8I GCNNGC 2 cut(s) 484, 501
CciI TCATGA 1 cut(s) 664
CfoI GCGC 2 cut(s) 21, 171
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 173, 635, 730
Csp6I GTAC 5 cut(s) 253, 357, 627, 964, 1112
CviAII CATG 7 cut(s) 151, 212, 380, 437, 623, 665, 983
CviQI GTAC 5 cut(s) 253, 357, 627, 964, 1112
DdeI CTNAG 5 cut(s) 15, 164, 441, 967, 1050
DpnI GATC 3 cut(s) 93, 837, 1032
DpnII GATC 3 cut(s) 91, 835, 1030
EaeI YGGCCR 1 cut(s) 814
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 670
Eco105I TACGTA 1 cut(s) 963
Eco24I GRGCYC 1 cut(s) 672
Eco32I GATATC 1 cut(s) 953
Eco47I GGWCC 2 cut(s) 635, 730
Eco53kI GAGCTC 1 cut(s) 670
Eco81I CCTNAGG 1 cut(s) 1050
Eco88I CYCGRG 3 cut(s) 40, 61, 450
Eco91I GGTNACC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 94, 202, 900
EcoRV GATATC 1 cut(s) 953
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 672
FaeI CATG 7 cut(s) 154, 215, 383, 440, 626, 668, 986
FaqI GGGAC 5 cut(s) 50, 322, 577, 736, 743
FatI CATG 7 cut(s) 150, 211, 379, 436, 622, 664, 982
FauNDI CATATG 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 6, 172, 351
FokI GGATG 2 cut(s) 347, 630
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 3 cut(s) 6, 172, 351
FspBI CTAG 3 cut(s) 266, 488, 825
GlaI GCGC 2 cut(s) 20, 170
GluI GCNGC 3 cut(s) 6, 172, 351
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 4 cut(s) 174, 424, 486, 816
HapII CCGG 6 cut(s) 69, 306, 324, 354, 428, 770
HhaI GCGC 2 cut(s) 21, 171
Hin1I GRCGYC 1 cut(s) 925
Hin1II CATG 7 cut(s) 154, 215, 383, 440, 626, 668, 986
Hin6I GCGC 2 cut(s) 19, 169
HinP1I GCGC 2 cut(s) 19, 169
HinfI GANTC 7 cut(s) 38, 99, 141, 509, 619, 821, 1015
HpaII CCGG 6 cut(s) 69, 306, 324, 354, 428, 770
HphI GGTGA 2 cut(s) 425, 686
Hpy166II GTNNAC 1 cut(s) 923
Hpy188I TCNGA 5 cut(s) 136, 589, 779, 933, 1030
Hpy188III TCNNGA 7 cut(s) 145, 224, 248, 316, 665, 875, 1099
Hpy8I GTNNAC 1 cut(s) 923
HpyAV CCTTC 4 cut(s) 353, 671, 840, 938
HpyCH4III ACNGT 3 cut(s) 917, 1111, 1116
HpyCH4IV ACGT 4 cut(s) 108, 925, 962, 1075
HpyCH4V TGCA 4 cut(s) 413, 521, 569, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 527, 882
HpyF3I CTNAG 5 cut(s) 15, 164, 441, 967, 1050
HpySE526I ACGT 4 cut(s) 108, 925, 962, 1075
Hsp92I GRCGYC 1 cut(s) 925
Hsp92II CATG 7 cut(s) 154, 215, 383, 440, 626, 668, 986
HspAI GCGC 2 cut(s) 19, 169
Kzo9I GATC 3 cut(s) 91, 835, 1030
LmnI GCTCC 1 cut(s) 1057
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 285, 325
MaeI CTAG 3 cut(s) 266, 488, 825
MaeII ACGT 4 cut(s) 108, 925, 962, 1075
MaeIII GTNAC 2 cut(s) 431, 911
MalI GATC 3 cut(s) 93, 837, 1032
MboI GATC 3 cut(s) 91, 835, 1030
MboII GAAGA 4 cut(s) 219, 602, 920, 971
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 68, 672, 1005
MlsI TGGCCA 1 cut(s) 816
MluCI AATT 3 cut(s) 227, 402, 697
MluNI TGGCCA 1 cut(s) 816
MlyI GAGTC 3 cut(s) 32, 150, 503
Mox20I TGGCCA 1 cut(s) 816
Mph1103I ATGCAT 1 cut(s) 415
MscI TGGCCA 1 cut(s) 816
MseI TTAA 3 cut(s) 474, 1089, 1132
MslI CAYNNNNRTG 2 cut(s) 86, 918
Msp20I TGGCCA 1 cut(s) 816
MspI CCGG 6 cut(s) 69, 306, 324, 354, 428, 770
MspR9I CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
MvaI CCWGG 3 cut(s) 96, 204, 902
MvnI CGCG 3 cut(s) 21, 171, 876
MwoI GCNNNNNNNGC 3 cut(s) 488, 527, 882
NciI CCSGG 4 cut(s) 307, 324, 429, 770
NdeI CATATG 1 cut(s) 615
NdeII GATC 3 cut(s) 91, 835, 1030
NlaIII CATG 7 cut(s) 154, 215, 383, 440, 626, 668, 986
NlaIV GGNNCC 5 cut(s) 67, 93, 636, 731, 1097
NmuCI GTSAC 2 cut(s) 431, 911
NruI TCGCGA 1 cut(s) 876
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 2 cut(s) 215, 383
OliI CACNNNNGTG 1 cut(s) 918
PaeR7I CTCGAG 1 cut(s) 450
PagI TCATGA 1 cut(s) 664
PfeI GAWTC 4 cut(s) 99, 619, 821, 1015
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 2 cut(s) 94, 202
PkrI GCNGC 3 cut(s) 7, 173, 352
PleI GAGTC 3 cut(s) 32, 149, 503
PpsI GAGTC 3 cut(s) 32, 149, 503
Ppu21I YACGTR 1 cut(s) 963
PsiI TTATAA 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 672
Psp6I CCWGG 3 cut(s) 94, 202, 900
PspEI GGTNACC 1 cut(s) 431
PspGI CCWGG 3 cut(s) 94, 202, 900
PspN4I GGNNCC 5 cut(s) 67, 93, 636, 731, 1097
PspPI GGNCC 3 cut(s) 173, 635, 730
PspXI VCTCGAGB 1 cut(s) 450
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 1 cut(s) 91
RruI TCGCGA 1 cut(s) 876
RsaI GTAC 5 cut(s) 254, 358, 628, 965, 1113
RsaNI GTAC 5 cut(s) 253, 357, 627, 964, 1112
RseI CAYNNNNRTG 2 cut(s) 86, 918
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 474, 1089, 1132
SatI GCNGC 3 cut(s) 6, 172, 351
Sau3AI GATC 3 cut(s) 91, 835, 1030
Sau96I GGNCC 3 cut(s) 173, 635, 730
SchI GAGTC 3 cut(s) 32, 150, 503
ScrFI CCNGG 7 cut(s) 96, 204, 307, 324, 429, 770, 902
SduI GDGCHC 3 cut(s) 68, 672, 1005
SfaNI GCATC 2 cut(s) 285, 325
SfcI CTRYAG 2 cut(s) 567, 1068
Sfr274I CTCGAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 635, 730
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 2 cut(s) 86, 918
SmlI CTYRAG 2 cut(s) 450, 992
SmoI CTYRAG 2 cut(s) 450, 992
SnaBI TACGTA 1 cut(s) 963
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 3 cut(s) 227, 402, 697
SsiI CCGC 2 cut(s) 171, 369
SspMI CTAG 3 cut(s) 266, 488, 825
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 7 cut(s) 94, 202, 305, 322, 427, 768, 900
TaaI ACNGT 3 cut(s) 917, 1111, 1116
TaiI ACGT 4 cut(s) 111, 928, 965, 1078
TaqI TCGA 2 cut(s) 78, 451
TaqII GACCGA 2 cut(s) 573, 747
TasI AATT 3 cut(s) 227, 402, 697
TatI WGTACW 2 cut(s) 252, 1111
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 4 cut(s) 99, 619, 821, 1015
Tru1I TTAA 3 cut(s) 474, 1089, 1132
Tru9I TTAA 3 cut(s) 474, 1089, 1132
TscAI CASTG 3 cut(s) 88, 537, 920
TseFI GTSAC 2 cut(s) 431, 911
TseI GCWGC 2 cut(s) 5, 350
Tsp45I GTSAC 2 cut(s) 431, 911
TspDTI ATGAA 8 cut(s) 276, 389, 539, 602, 632, 653, 767, 971
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 3 cut(s) 88, 537, 920
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 2 cut(s) 635, 730
XceI RCATGY 2 cut(s) 215, 383
XhoI CTCGAG 1 cut(s) 450
XspI CTAG 3 cut(s) 266, 488, 825
ZraI GACGTC 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.