FvH4_3g26560

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012923
Physical Location & Seq
Reverse (-)
19685826 .. 19688024
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26560.t2

Sequence Viewer

Length: 1200 bp
ATGGAAATTCATAGTTGCGTTTTCCCAGTGGCCTTAAAAGACACAAGTCCAACTAAACAGACATTCATGGCTGCTTCAACTGAGCGCGTTGATGTGTTCTGGGACTCCGGCATGCTGACCCATGACTCGGGCACCGGAGTATTCGACACTGGAATGGATCCTGGATTCCTTGACGTCTTAGAGAAGCACCCAGAGAACTCTGATAGAGTCAAGAACATGGTCTCTATTCTAAAGAGAGGCCCAATCTCTCCTTACATTTCTTGGCTTCCTGGAAGGCATGCCCTGCTTCCTGAATTGCTATCTTTCCACTCTCAAGAATACATAAATGAACTAGTTAAAGCAGATAAAGAGGGAGGCAAGATGCTATGTGCCGGGACTTTCTTGAACCCCGGTTCGTGGGATGCCGCCCTTCTTGCTGCCGGTACTACACTATCTGCAATGAAGCATGTGATTAATGGAAATGGGAAAATTGCTTATGCATTGGTCAGGCCTCCCGGTCACCACGCTCAGCCTACTCGGGCTGATGGCTACTGCTTCCTTAACAATGCTGGTCTTGCTGTTCAATTGGCTTTAGACTCTGGCTGTGCAAAGGTTGCTGTGATAGACATTGATGTTCATTACGGCAATGGGACTGCTGAGGGTTTCTATCGGTCTGATAAGGTTCTTACAACCTCCCTCCATATGAATCATGGTACTTGGGGTCCATCTCACCCACAGAATGGCTCTATTCATGAGCTCGGTGAAGAGGATGGCTTTGGTTATAATTTGAATATACCTTTACCCAATGGGACAGGGGACCGAGGATATGTGTATGCTATGAATGAGTTGATTGCCCCAGCAATCAGAAAGTTTGAGCCTGAACTCTTAGTTTTGGTCATTGGCCAAGATTCTAGTGCTTTTGATCCAAATGGAAGGCAATGCTTGACAATGGAGGGTTATCGAGAGATTGGCAAGAAAGTTCGCAGCCTGGTGAATAGACATTGTGGCGGACGTCTTCTGATTGTCCAAGAAGGTGGCTATCACATTACATACTCAGCCTATTGTCTTCATGCAACACTTGAAGGTGTGCTGAACCTACCTATTCCTTTGTTATCCGATCCCATTGCTTATTACCCTGAGGACGAGCGATTATCTGTAGAAGGTATTGATTCCATTAAAAGGTTTCAGAAAGATACTGTACCATTTTTGAAAGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

400

Amino Acids

43.58

Weight (kDa)

5.79

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 63 - 345 1.5e-75 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 762
AatII GACGTC 2 cut(s) 177, 994
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 719
AccII CGCG 1 cut(s) 87
AciI CCGC 2 cut(s) 405, 987
AclWI GGATC 4 cut(s) 152, 165, 896, 1091
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 2 cut(s) 174, 991
AfaI GTAC 3 cut(s) 424, 694, 1179
AfiI CCNNNNNNNGG 4 cut(s) 127, 396, 719, 1158
AgsI TTSAA 6 cut(s) 78, 385, 563, 769, 1061, 1189
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 3 cut(s) 160, 268, 966
AluBI AGCT 1 cut(s) 736
AluI AGCT 1 cut(s) 736
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 4 cut(s) 152, 165, 896, 1091
Ama87I CYCGRG 2 cut(s) 127, 516
AoxI GGCC 4 cut(s) 30, 238, 488, 880
ApeKI GCWGC 3 cut(s) 71, 416, 963
ApoI RAATTY 1 cut(s) 6
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 3 cut(s) 239, 701, 796
AsuC2I CCSGG 3 cut(s) 373, 390, 495
AsuHPI GGTGA 4 cut(s) 491, 701, 752, 982
AvaI CYCGRG 2 cut(s) 127, 516
AvaII GGWCC 2 cut(s) 701, 796
AxyI CCTNAGG 1 cut(s) 1116
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 882
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 738
BbsI GAAGAC 2 cut(s) 986, 1037
Bbv12I GWGCWC 1 cut(s) 738
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 58, 403, 975
BccI CCATC 3 cut(s) 518, 712, 743
BceAI ACGGC 1 cut(s) 637
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BciT130I CCWGG 3 cut(s) 162, 270, 968
BcnI CCSGG 3 cut(s) 373, 390, 495
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 2 cut(s) 332, 891
BfmI CTRYAG 1 cut(s) 1134
BisI GCNGC 4 cut(s) 72, 405, 417, 964
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 4 cut(s) 73, 406, 418, 965
Bme1390I CCNGG 6 cut(s) 162, 270, 373, 390, 495, 968
Bme18I GGWCC 2 cut(s) 701, 796
BmeT110I CYCGRG 2 cut(s) 127, 516
BmgT120I GGNCC 3 cut(s) 239, 701, 796
BmiI GGNNCC 4 cut(s) 133, 159, 702, 797
BmrFI CCNGG 6 cut(s) 162, 270, 373, 390, 495, 968
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 351, 391
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 986, 1037
Bpu10I CCTNAGC 1 cut(s) 636
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 3 cut(s) 373, 390, 495
BsaHI GRCGYC 2 cut(s) 174, 991
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 388, 799
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 396, 719, 1158
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 26, 154
Bse21I CCTNAGG 1 cut(s) 1116
Bse3DI GCAATG 4 cut(s) 444, 631, 923, 1101
BseBI CCWGG 3 cut(s) 162, 270, 968
BseDI CCNNGG 2 cut(s) 388, 799
BseGI GGATG 2 cut(s) 406, 754
BseLI CCNNNNNNNGG 4 cut(s) 127, 396, 719, 1158
BseMI GCAATG 4 cut(s) 444, 631, 923, 1101
BseMII CTCAG 5 cut(s) 72, 521, 627, 1047, 1107
BseNI ACTGG 2 cut(s) 26, 154
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 3 cut(s) 58, 403, 975
BseYI CCCAGC 1 cut(s) 835
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 32, 240, 490, 882
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 2 cut(s) 127, 516
BsiSI CCGG 6 cut(s) 108, 135, 372, 390, 420, 495
BslFI GGGAC 5 cut(s) 116, 388, 643, 802, 809
BslI CCNNNNNNNGG 4 cut(s) 127, 396, 719, 1158
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 5 cut(s) 116, 388, 643, 802, 809
BsnI GGCC 4 cut(s) 32, 240, 490, 882
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 2 cut(s) 127, 516
Bsp1286I GDGCHC 2 cut(s) 134, 738
Bsp143I GATC 3 cut(s) 157, 901, 1096
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 405, 987
BspANI GGCC 4 cut(s) 32, 240, 490, 882
BspCNI CTCAG 5 cut(s) 73, 520, 628, 1046, 1108
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 4 cut(s) 133, 159, 702, 797
BspPI GGATC 4 cut(s) 152, 165, 896, 1091
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 4 cut(s) 444, 631, 923, 1101
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 26, 154
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 2 cut(s) 388, 799
BssMI GATC 3 cut(s) 157, 901, 1096
BssNI GRCGYC 2 cut(s) 174, 991
Bst2UI CCWGG 3 cut(s) 162, 270, 968
Bst4CI ACNGT 1 cut(s) 1177
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 2 cut(s) 174, 991
BstAPI GCANNNNNTGC 2 cut(s) 283, 593
BstC8I GCNNGC 2 cut(s) 113, 279
BstDEI CTNAG 7 cut(s) 81, 178, 507, 636, 865, 1033, 1116
BstEII GGTNACC 1 cut(s) 497
BstF5I GGATG 2 cut(s) 406, 754
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 3 cut(s) 160, 904, 1099
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 157, 901, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 283, 413, 554, 593
BstNI CCWGG 3 cut(s) 162, 270, 968
BstNSI RCATGY 3 cut(s) 115, 281, 449
BstPAI GACNNNNGTC 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 497
BstSCI CCNGG 6 cut(s) 160, 268, 371, 388, 493, 966
BstSFI CTRYAG 1 cut(s) 1134
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 58, 403, 975
BstV2I GAAGAC 2 cut(s) 986, 1037
BstX2I RGATCY 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 1013
BstYI RGATCY 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 1116
BsuRI GGCC 4 cut(s) 32, 240, 490, 882
BtsCI GGATG 2 cut(s) 406, 754
BtsIMutI CAGTG 2 cut(s) 33, 147
Cac8I GCNNGC 2 cut(s) 113, 279
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 239, 701, 796
Csp6I GTAC 3 cut(s) 423, 693, 1178
CviAII CATG 9 cut(s) 67, 112, 122, 217, 278, 446, 689, 731, 1049
CviQI GTAC 3 cut(s) 423, 693, 1178
DdeI CTNAG 7 cut(s) 81, 178, 507, 636, 865, 1033, 1116
DpnI GATC 3 cut(s) 159, 903, 1098
DpnII GATC 3 cut(s) 157, 901, 1096
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 1002
Ecl136II GAGCTC 1 cut(s) 736
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 738
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 701, 796
Eco53kI GAGCTC 1 cut(s) 736
Eco81I CCTNAGG 1 cut(s) 1116
Eco88I CYCGRG 2 cut(s) 127, 516
Eco91I GGTNACC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 160, 268, 966
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 738
FaeI CATG 9 cut(s) 70, 115, 125, 220, 281, 449, 692, 734, 1052
FaqI GGGAC 5 cut(s) 116, 388, 643, 802, 809
FatI CATG 9 cut(s) 66, 111, 121, 216, 277, 445, 688, 730, 1048
FauNDI CATATG 1 cut(s) 681
Fnu4HI GCNGC 4 cut(s) 72, 405, 417, 964
FokI GGATG 2 cut(s) 413, 761
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 4 cut(s) 72, 405, 417, 964
FspBI CTAG 2 cut(s) 332, 891
GlaI GCGC 1 cut(s) 86
GluI GCNGC 4 cut(s) 72, 405, 417, 964
GsaI CCCAGC 1 cut(s) 839
HaeIII GGCC 4 cut(s) 32, 240, 490, 882
HapII CCGG 6 cut(s) 108, 135, 372, 390, 420, 495
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 2 cut(s) 174, 991
Hin1II CATG 9 cut(s) 70, 115, 125, 220, 281, 449, 692, 734, 1052
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 8 cut(s) 104, 125, 165, 207, 575, 685, 887, 1148
HpaII CCGG 6 cut(s) 108, 135, 372, 390, 420, 495
HphI GGTGA 4 cut(s) 491, 701, 752, 982
Hpy188I TCNGA 6 cut(s) 202, 655, 845, 999, 1096, 1167
Hpy188III TCNNGA 6 cut(s) 211, 290, 314, 382, 731, 941
HpyAV CCTTC 6 cut(s) 267, 419, 906, 1004, 1055, 1133
HpyCH4III ACNGT 1 cut(s) 1177
HpyCH4IV ACGT 2 cut(s) 174, 991
HpyCH4V TGCA 4 cut(s) 437, 479, 587, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 413, 554, 593
HpyF3I CTNAG 7 cut(s) 81, 178, 507, 636, 865, 1033, 1116
HpySE526I ACGT 2 cut(s) 174, 991
Hsp92I GRCGYC 2 cut(s) 174, 991
Hsp92II CATG 9 cut(s) 70, 115, 125, 220, 281, 449, 692, 734, 1052
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 157, 901, 1096
Lsp1109I GCAGC 3 cut(s) 58, 403, 975
LweI GCATC 2 cut(s) 351, 391
MaeI CTAG 2 cut(s) 332, 891
MaeII ACGT 2 cut(s) 174, 991
MaeIII GTNAC 1 cut(s) 497
MalI GATC 3 cut(s) 159, 903, 1098
MboI GATC 3 cut(s) 157, 901, 1096
MboII GAAGA 3 cut(s) 755, 986, 1037
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 134, 738
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 6 cut(s) 6, 293, 468, 563, 763, 1195
MluNI TGGCCA 1 cut(s) 882
MlyI GAGTC 4 cut(s) 98, 119, 216, 569
MmeI TCCRAC 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 882
Mph1103I ATGCAT 1 cut(s) 481
MscI TGGCCA 1 cut(s) 882
MseI TTAA 6 cut(s) 35, 336, 453, 540, 1155, 1198
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 882
MspI CCGG 6 cut(s) 108, 135, 372, 390, 420, 495
MspR9I CCNGG 6 cut(s) 162, 270, 373, 390, 495, 968
MunI CAATTG 1 cut(s) 563
MvaI CCWGG 3 cut(s) 162, 270, 968
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 283, 413, 554, 593
NciI CCSGG 3 cut(s) 373, 390, 495
NdeI CATATG 1 cut(s) 681
NdeII GATC 3 cut(s) 157, 901, 1096
NlaIII CATG 9 cut(s) 70, 115, 125, 220, 281, 449, 692, 734, 1052
NlaIV GGNNCC 4 cut(s) 133, 159, 702, 797
NmuCI GTSAC 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 3 cut(s) 115, 281, 449
PaeI GCATGC 2 cut(s) 115, 281
PagI TCATGA 1 cut(s) 730
PceI AGGCCT 1 cut(s) 490
PfeI GAWTC 4 cut(s) 165, 685, 887, 1148
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 2 cut(s) 160, 268
PkrI GCNGC 4 cut(s) 73, 406, 418, 965
PleI GAGTC 4 cut(s) 98, 119, 215, 569
PpsI GAGTC 4 cut(s) 98, 119, 215, 569
PshAI GACNNNNGTC 1 cut(s) 45
PshBI ATTAAT 1 cut(s) 453
PsiI TTATAA 1 cut(s) 762
Psp124BI GAGCTC 1 cut(s) 738
Psp6I CCWGG 3 cut(s) 160, 268, 966
PspEI GGTNACC 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 835
PspGI CCWGG 3 cut(s) 160, 268, 966
PspN4I GGNNCC 4 cut(s) 133, 159, 702, 797
PspPI GGNCC 3 cut(s) 239, 701, 796
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 3 cut(s) 424, 694, 1179
RsaNI GTAC 3 cut(s) 423, 693, 1178
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 6 cut(s) 35, 336, 453, 540, 1155, 1198
SatI GCNGC 4 cut(s) 72, 405, 417, 964
Sau3AI GATC 3 cut(s) 157, 901, 1096
Sau96I GGNCC 3 cut(s) 239, 701, 796
SchI GAGTC 4 cut(s) 98, 119, 216, 569
ScrFI CCNGG 6 cut(s) 162, 270, 373, 390, 495, 968
SduI GDGCHC 2 cut(s) 134, 738
SfaNI GCATC 2 cut(s) 351, 391
SfcI CTRYAG 1 cut(s) 1134
SinI GGWCC 2 cut(s) 701, 796
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 331
SphI GCATGC 2 cut(s) 115, 281
Sse9I AATT 6 cut(s) 6, 293, 468, 563, 763, 1195
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 2 cut(s) 405, 987
SspMI CTAG 2 cut(s) 332, 891
SstI GAGCTC 1 cut(s) 738
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 6 cut(s) 160, 268, 371, 388, 493, 966
TaaI ACNGT 1 cut(s) 1177
TaiI ACGT 2 cut(s) 177, 994
TaqI TCGA 2 cut(s) 144, 940
TaqII GACCGA 2 cut(s) 639, 813
TasI AATT 6 cut(s) 6, 293, 468, 563, 763, 1195
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 4 cut(s) 165, 685, 887, 1148
Tru1I TTAA 6 cut(s) 35, 336, 453, 540, 1155, 1198
Tru9I TTAA 6 cut(s) 35, 336, 453, 540, 1155, 1198
TscAI CASTG 2 cut(s) 33, 154
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 3 cut(s) 71, 416, 963
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 8 cut(s) 55, 342, 455, 605, 698, 719, 833, 1037
TspRI CASTG 2 cut(s) 33, 154
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 701, 796
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 6
XceI RCATGY 3 cut(s) 115, 281, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 2 cut(s) 332, 891
ZraI GACGTC 2 cut(s) 175, 992
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.