RLG00000034504

histone deacetylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
43853144 .. 43854981
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034504

Sequence Viewer

Length: 1173 bp
ATGGGTACTGGCAAGGCAGCAACGCACTCATCCCCCTCCATGGCTGCTTCAACTGAGCGCGTAGATGTGTTCTGGGACTCGGGCATGCTGAACCATAACTCGGGCACCGGAGTATTCGACACTGGAATGGATCCTGGATTCCTTGACGTGTTAGAAAAGCACCCAGAGAACTCTGATAGAGTCAAGAACATGGTTTCTATTCTAAAGAGAGGTCCAATCTCTCCCTACATTTCTTGGCTTCCTGGAAGGCATGCCCTGCTTCCTGAATTGCTCTCTTTCCACTCTCCAGAGTACATAAATGAACTAGTTGAAGCGGATAAAGAGGGAGGTAAGATGCTATGTGCTGGGACTTTCTTGAACCCCGGCTCGTGGGATGCCTCCCTTCTTGCTGCCGGTACTACACTATCTGCAATGAAGCATGTGCTAGACGGAAATGGCAAAATTGCTTATGCATTGGTCAGGCCTCCGGGTCACCACGCACAGCCTACTCGAGCTGATGGCTACTGCTTCCTTAACAATGCTGGTCTTGCTGTTCAGCTTGCTTTAAACTCTGGCTGTGCAAAGGTCGCGGTAATAGACATTGATGTTCATTATGGCAATGGGACCGCCGAGGGGTTTTATCTTTCTGATAAGGTTCTTACAACTTCCCTTCATATGAATCATGGTACTTGGGGTCCATCTCACCCACAGAATGGCTCTATTCATGAGCTCGGTGAAGGGGAGGGCTTCGGTTATAATTTGAATATACCTTTGCCCAATGGGACAGGGGACCGAGGATATGTGTATGCTATGAACGAGTTGGTTACCCCGGCAGTCAGAAAGTTTGAGCCTGAAATGATAGTTTTGGTCATTGGCCAAGATTCTAGTGCTTTTGATCCAAATGGAAGGCAATGTTTGACAATGGAGGGTTATCGAGAGATTGGCAGGATAGTTCGTAGCCTGGTGGATAGGCACTGTGGTGGACGTCTTCTGATTGTCCAAGAAGGTGGATATCACATTACGTACTCAGCCTATTGCCTTCATGCAACACTTGAGGGTGTGCTCAACCTACCGATTCCTTTGTTATCCGATCCCATTGCTTATTACCCTGAGGATGAGCGATTATCTGTAGAACGTATTGAATCCATTAAAAGGTTCCAGAAAGATACTGTACTGTTTTTGAAAGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

391

Amino Acids

42.41

Weight (kDa)

5.76

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 54 - 345 1.3e-82 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012923)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
AatII GACGTC 1 cut(s) 967
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 692
AccII CGCG 2 cut(s) 60, 569
AciI CCGC 3 cut(s) 314, 569, 606
AclWI GGATC 4 cut(s) 125, 138, 869, 1064
AcoI YGGCCR 1 cut(s) 853
AcyI GRCGYC 1 cut(s) 964
AfaI GTAC 6 cut(s) 7, 293, 397, 667, 1004, 1152
AfiI CCNNNNNNNGG 6 cut(s) 40, 100, 369, 612, 692, 1131
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 6 cut(s) 51, 311, 358, 742, 1121, 1162
AhlI ACTAGT 1 cut(s) 304
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 133, 241, 939
AleI CACNNNNGTG 1 cut(s) 957
AluBI AGCT 3 cut(s) 494, 538, 709
AluI AGCT 3 cut(s) 494, 538, 709
Alw21I GWGCWC 2 cut(s) 711, 1044
AlwI GGATC 4 cut(s) 125, 138, 869, 1064
Ama87I CYCGRG 3 cut(s) 79, 100, 489
AoxI GGCC 2 cut(s) 461, 853
ApeKI GCWGC 3 cut(s) 17, 44, 389
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 4 cut(s) 212, 603, 674, 769
AsuC2I CCSGG 3 cut(s) 363, 468, 809
AsuHPI GGTGA 3 cut(s) 464, 674, 725
AvaI CYCGRG 3 cut(s) 79, 100, 489
AvaII GGWCC 4 cut(s) 212, 603, 674, 769
AxyI CCTNAGG 1 cut(s) 1089
BaeGI GKGCMC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 855
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 711
BauI CACGAG 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 2 cut(s) 711, 1044
BbvI GCAGC 3 cut(s) 29, 31, 376
BccI CCATC 2 cut(s) 491, 685
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 3 cut(s) 135, 243, 941
BcnI CCSGG 3 cut(s) 363, 468, 809
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 3 cut(s) 305, 425, 864
BfmI CTRYAG 1 cut(s) 1107
BisI GCNGC 3 cut(s) 18, 45, 390
BlsI GCNGC 3 cut(s) 19, 46, 391
Bme1390I CCNGG 6 cut(s) 135, 243, 363, 468, 809, 941
Bme18I GGWCC 4 cut(s) 212, 603, 674, 769
BmeT110I CYCGRG 3 cut(s) 79, 100, 489
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 4 cut(s) 212, 603, 674, 769
BmiI GGNNCC 6 cut(s) 106, 132, 604, 675, 770, 1136
BmrFI CCNGG 6 cut(s) 135, 243, 363, 468, 809, 941
BmsI GCATC 2 cut(s) 324, 364
BpiI GAAGAC 1 cut(s) 959
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 1052
BpuMI CCSGG 3 cut(s) 363, 468, 809
BsaAI YACGTR 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 964
BsaJI CCNNGG 5 cut(s) 39, 361, 609, 772, 807
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 100, 369, 612, 692, 1131
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 13, 127
Bse21I CCTNAGG 1 cut(s) 1089
Bse3DI GCAATG 4 cut(s) 417, 604, 896, 1074
BseBI CCWGG 3 cut(s) 135, 243, 941
BseDI CCNNGG 5 cut(s) 39, 361, 609, 772, 807
BseGI GGATG 3 cut(s) 29, 379, 1099
BseLI CCNNNNNNNGG 6 cut(s) 40, 100, 369, 612, 692, 1131
BseMI GCAATG 4 cut(s) 417, 604, 896, 1074
BseMII CTCAG 3 cut(s) 45, 1020, 1080
BseNI ACTGG 2 cut(s) 13, 127
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 3 cut(s) 29, 31, 376
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 2 cut(s) 60, 569
BshFI GGCC 2 cut(s) 463, 855
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 711, 1044
BsiHKCI CYCGRG 3 cut(s) 79, 100, 489
BsiSI CCGG 5 cut(s) 108, 363, 393, 467, 809
BslFI GGGAC 5 cut(s) 89, 361, 616, 775, 782
BslI CCNNNNNNNGG 6 cut(s) 40, 100, 369, 612, 692, 1131
BsmFI GGGAC 5 cut(s) 89, 361, 616, 775, 782
BsnI GGCC 2 cut(s) 463, 855
BsoBI CYCGRG 3 cut(s) 79, 100, 489
Bsp1286I GDGCHC 3 cut(s) 107, 711, 1044
Bsp143I GATC 3 cut(s) 130, 874, 1069
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 3 cut(s) 314, 569, 606
BspANI GGCC 2 cut(s) 463, 855
BspCNI CTCAG 3 cut(s) 46, 1019, 1081
BspFNI CGCG 2 cut(s) 60, 569
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 6 cut(s) 106, 132, 604, 675, 770, 1136
BspPI GGATC 4 cut(s) 125, 138, 869, 1064
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 4 cut(s) 417, 604, 896, 1074
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 13, 127
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 5 cut(s) 39, 361, 609, 772, 807
BssMI GATC 3 cut(s) 130, 874, 1069
BssNI GRCGYC 1 cut(s) 964
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 3 cut(s) 135, 243, 941
Bst4CI ACNGT 3 cut(s) 956, 1150, 1155
BstACI GRCGYC 1 cut(s) 964
BstAPI GCANNNNNTGC 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 1002
BstC8I GCNNGC 3 cut(s) 86, 252, 540
BstDEI CTNAG 3 cut(s) 54, 1006, 1089
BstDSI CCRYGG 1 cut(s) 39
BstEII GGTNACC 2 cut(s) 470, 802
BstF5I GGATG 3 cut(s) 29, 379, 1099
BstFNI CGCG 2 cut(s) 60, 569
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 133, 877, 1072
BstMBI GATC 3 cut(s) 130, 874, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 256, 527, 566
BstNI CCWGG 3 cut(s) 135, 243, 941
BstNSI RCATGY 3 cut(s) 88, 254, 422
BstPI GGTNACC 2 cut(s) 470, 802
BstSCI CCNGG 6 cut(s) 133, 241, 361, 466, 807, 939
BstSFI CTRYAG 1 cut(s) 1107
BstSLI GKGCMC 1 cut(s) 107
BstSNI TACGTA 1 cut(s) 1002
BstUI CGCG 2 cut(s) 60, 569
BstV1I GCAGC 3 cut(s) 29, 31, 376
BstV2I GAAGAC 1 cut(s) 959
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 986
BstYI RGATCY 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 1089
BsuRI GGCC 2 cut(s) 463, 855
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 29, 379, 1099
BtsIMutI CAGTG 2 cut(s) 120, 952
Cac8I GCNNGC 3 cut(s) 86, 252, 540
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 4 cut(s) 212, 603, 674, 769
Csp6I GTAC 6 cut(s) 6, 292, 396, 666, 1003, 1151
CviAII CATG 8 cut(s) 40, 85, 190, 251, 419, 662, 704, 1022
CviQI GTAC 6 cut(s) 6, 292, 396, 666, 1003, 1151
DdeI CTNAG 3 cut(s) 54, 1006, 1089
DpnI GATC 3 cut(s) 132, 876, 1071
DpnII GATC 3 cut(s) 130, 874, 1069
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 853
Ecl136II GAGCTC 1 cut(s) 709
Eco105I TACGTA 1 cut(s) 1002
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 711
Eco32I GATATC 1 cut(s) 992
Eco47I GGWCC 4 cut(s) 212, 603, 674, 769
Eco53kI GAGCTC 1 cut(s) 709
Eco81I CCTNAGG 1 cut(s) 1089
Eco88I CYCGRG 3 cut(s) 79, 100, 489
Eco91I GGTNACC 2 cut(s) 470, 802
EcoICRI GAGCTC 1 cut(s) 709
EcoO65I GGTNACC 2 cut(s) 470, 802
EcoRII CCWGG 3 cut(s) 133, 241, 939
EcoRV GATATC 1 cut(s) 992
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 8 cut(s) 43, 88, 193, 254, 422, 665, 707, 1025
FaqI GGGAC 5 cut(s) 89, 361, 616, 775, 782
FatI CATG 8 cut(s) 39, 84, 189, 250, 418, 661, 703, 1021
FauNDI CATATG 1 cut(s) 654
Fnu4HI GCNGC 3 cut(s) 18, 45, 390
FokI GGATG 3 cut(s) 16, 386, 1106
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 18, 45, 390
FspBI CTAG 3 cut(s) 305, 425, 864
GlaI GCGC 1 cut(s) 59
GluI GCNGC 3 cut(s) 18, 45, 390
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 463, 855
HapII CCGG 5 cut(s) 108, 363, 393, 467, 809
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 964
Hin1II CATG 8 cut(s) 43, 88, 193, 254, 422, 665, 707, 1025
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 7 cut(s) 77, 138, 180, 658, 860, 1054, 1121
HpaII CCGG 5 cut(s) 108, 363, 393, 467, 809
HphI GGTGA 3 cut(s) 464, 674, 725
Hpy166II GTNNAC 1 cut(s) 962
Hpy188I TCNGA 5 cut(s) 175, 628, 818, 972, 1069
Hpy188III TCNNGA 7 cut(s) 184, 263, 287, 355, 704, 914, 1138
Hpy8I GTNNAC 1 cut(s) 962
HpyAV CCTTC 7 cut(s) 240, 392, 659, 710, 879, 977, 1028
HpyCH4III ACNGT 3 cut(s) 956, 1150, 1155
HpyCH4IV ACGT 4 cut(s) 147, 964, 1001, 1114
HpyCH4V TGCA 4 cut(s) 410, 452, 560, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 527, 566
HpyF3I CTNAG 3 cut(s) 54, 1006, 1089
HpySE526I ACGT 4 cut(s) 147, 964, 1001, 1114
Hsp92I GRCGYC 1 cut(s) 964
Hsp92II CATG 8 cut(s) 43, 88, 193, 254, 422, 665, 707, 1025
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 3 cut(s) 130, 874, 1069
Lsp1109I GCAGC 3 cut(s) 29, 31, 376
LweI GCATC 2 cut(s) 324, 364
MaeI CTAG 3 cut(s) 305, 425, 864
MaeII ACGT 4 cut(s) 147, 964, 1001, 1114
MaeIII GTNAC 2 cut(s) 470, 802
MalI GATC 3 cut(s) 132, 876, 1071
MboI GATC 3 cut(s) 130, 874, 1069
MboII GAAGA 1 cut(s) 959
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 3 cut(s) 107, 711, 1044
MlsI TGGCCA 1 cut(s) 855
MluCI AATT 3 cut(s) 266, 441, 736
MluNI TGGCCA 1 cut(s) 855
MlyI GAGTC 2 cut(s) 71, 189
Mox20I TGGCCA 1 cut(s) 855
Mph1103I ATGCAT 1 cut(s) 454
MscI TGGCCA 1 cut(s) 855
MseI TTAA 4 cut(s) 513, 545, 1128, 1171
MslI CAYNNNNRTG 2 cut(s) 125, 957
Msp20I TGGCCA 1 cut(s) 855
MspI CCGG 5 cut(s) 108, 363, 393, 467, 809
MspR9I CCNGG 6 cut(s) 135, 243, 363, 468, 809, 941
MvaI CCWGG 3 cut(s) 135, 243, 941
MvnI CGCG 2 cut(s) 60, 569
MwoI GCNNNNNNNGC 3 cut(s) 256, 527, 566
NciI CCSGG 3 cut(s) 363, 468, 809
NcoI CCATGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 654
NdeII GATC 3 cut(s) 130, 874, 1069
NlaIII CATG 8 cut(s) 43, 88, 193, 254, 422, 665, 707, 1025
NlaIV GGNNCC 6 cut(s) 106, 132, 604, 675, 770, 1136
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 3 cut(s) 88, 254, 422
OliI CACNNNNGTG 1 cut(s) 957
PaeI GCATGC 2 cut(s) 88, 254
PaeR7I CTCGAG 1 cut(s) 489
PagI TCATGA 1 cut(s) 703
PceI AGGCCT 1 cut(s) 463
PfeI GAWTC 5 cut(s) 138, 658, 860, 1054, 1121
PflMI CCANNNNNTGG 1 cut(s) 692
PfoI TCCNGGA 2 cut(s) 133, 241
PkrI GCNGC 3 cut(s) 19, 46, 391
PleI GAGTC 2 cut(s) 71, 188
PpsI GAGTC 2 cut(s) 71, 188
Ppu21I YACGTR 1 cut(s) 1002
PsiI TTATAA 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 133, 241, 939
PspEI GGTNACC 2 cut(s) 470, 802
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 3 cut(s) 133, 241, 939
PspN4I GGNNCC 6 cut(s) 106, 132, 604, 675, 770, 1136
PspPI GGNCC 4 cut(s) 212, 603, 674, 769
PspXI VCTCGAGB 1 cut(s) 489
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 6 cut(s) 7, 293, 397, 667, 1004, 1152
RsaNI GTAC 6 cut(s) 6, 292, 396, 666, 1003, 1151
RseI CAYNNNNRTG 2 cut(s) 125, 957
SacI GAGCTC 1 cut(s) 711
SaqAI TTAA 4 cut(s) 513, 545, 1128, 1171
SatI GCNGC 3 cut(s) 18, 45, 390
Sau3AI GATC 3 cut(s) 130, 874, 1069
Sau96I GGNCC 4 cut(s) 212, 603, 674, 769
SchI GAGTC 2 cut(s) 71, 189
ScrFI CCNGG 6 cut(s) 135, 243, 363, 468, 809, 941
SduI GDGCHC 3 cut(s) 107, 711, 1044
SfaNI GCATC 2 cut(s) 324, 364
SfcI CTRYAG 1 cut(s) 1107
Sfr274I CTCGAG 1 cut(s) 489
SinI GGWCC 4 cut(s) 212, 603, 674, 769
SlaI CTCGAG 1 cut(s) 489
SmiMI CAYNNNNRTG 2 cut(s) 125, 957
SmlI CTYRAG 2 cut(s) 489, 1031
SmoI CTYRAG 2 cut(s) 489, 1031
SnaBI TACGTA 1 cut(s) 1002
SpeI ACTAGT 1 cut(s) 304
SphI GCATGC 2 cut(s) 88, 254
Sse9I AATT 3 cut(s) 266, 441, 736
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 3 cut(s) 314, 569, 606
SspMI CTAG 3 cut(s) 305, 425, 864
SstI GAGCTC 1 cut(s) 711
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 6 cut(s) 133, 241, 361, 466, 807, 939
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 956, 1150, 1155
TaiI ACGT 4 cut(s) 150, 967, 1004, 1117
TaqI TCGA 3 cut(s) 117, 490, 913
TaqII GACCGA 1 cut(s) 786
TasI AATT 3 cut(s) 266, 441, 736
TatI WGTACW 2 cut(s) 291, 1150
TfiI GAWTC 5 cut(s) 138, 658, 860, 1054, 1121
Tru1I TTAA 4 cut(s) 513, 545, 1128, 1171
Tru9I TTAA 4 cut(s) 513, 545, 1128, 1171
TscAI CASTG 2 cut(s) 127, 959
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 17, 44, 389
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 8 cut(s) 315, 428, 578, 641, 671, 692, 806, 1010
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 2 cut(s) 127, 959
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 4 cut(s) 212, 603, 674, 769
XceI RCATGY 3 cut(s) 88, 254, 422
XhoI CTCGAG 1 cut(s) 489
XspI CTAG 3 cut(s) 305, 425, 864
ZraI GACGTC 1 cut(s) 965
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.