MD03G1154900.v1.1

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012923
Physical Location & Seq
Reverse (-)
17757824 .. 17760240
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1154900.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCTGCTTTAACTGCTACTGCCCCAGCTGACCGAATACATGTATTCTGGCACGAGGGCATGCTCAACCACGACTCCGGCCATGGAGTATTCGACACTGGAATGGATCCTGGTTTTCTAGACGTTCTAGAAAAGCACCCAGAGAACTCTGACAGAATCAAAAACATGGTTTCTATTCTAAAAAGAGGTCCCATCTCTCCCTACATATCTTGGGTTCCGGGAAGGCCTTCTCTGCTCTCTGAATTGCTCTCTTTCCACTCTCCAGAATACATAAATGAGCTAGTTGAAGCAGATAGAGATGGGGGTAAGATGCTATGTACCGGCACTTTCTTGAACCCCGGCTCATGGGATGCCTCGCTCCTTGCTGCCGGTACTACATTATCAGCAATGAGGCATGTACTTGATGGACACGGAAAAATTTCTTATGCATTGGTTAGGCCTCCGGGTCACCATGCTCAGCCTACACAAGCTGATGGCTACTGCTTCCTTAACAATGCCGGTCTTGCTGTTCAATTGGCTTTAAATTCTGGCTGTGCAAAGGTTGCAGTCGTAGACATCGATGTTCATTATGGAAATGGGACTGCCGAGGGGTTTTATCGGTCTGATAAAGTTCTTACAATCTCCCTTCACATGAATCATGGTTCCTGGGGCCCGTCTCACCCACAAACTGGCTCTGTTGATGAGCTCGGTGAAGGGGAAGGGCTAGGTTATAATTTGAATATACCTCTGCCAAATGGGACAGGGGACCAAGGATATGGACATGCCATGACTGAGTTGGTTGTCCCTGCTGTTGGAAAGTTTGAACCTGAAATGATAGTTCTGGTCATTGGCCAAGATTCAAGTGCGTTTGATCCAAATGGAAGGCAATGCTTGACAATGGAGGGTTATAAAGAGATTGGCCGCATGGTTCGGGGCCTGGCGGATAGACACTGCAGAGGACGTCTTCTGATTGTCCAGGAAGGTGGATATCATGTTACCTACTCAGCCTATTGTCTTCATGCAACACTTGAAGGTGTGCTTAACCTACCAGTTTCTTTATTATCTGATCCCATTGCTTATTACCCAGAGGATAAGGCATTTGCTATAGAAGTAATTAAATCTATTAAAAAGTTCCAGAAAGACAATGTACCGTTTTTAATTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

383

Amino Acids

41.43

Weight (kDa)

5.58

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 46 - 337 2.7e-83 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08460 AT1G08460
fragaria_vesca FvH4_3g26560 FvH4_3g26560
malus_domestica MD03G1154900.v1.1
prunus_persica Prupe.6G143900_v2.0.a1
pyrus_communis pycom03g10870
rosa_chinensis RchiOBHm_Chr5g0048241
rosa_laevigata RLG00000034504
rosa_multiflora Rmu_sc0001408.1_g000004
rosa_roxburghii Rroxscaffold_1G00033640 Rroxscaffold_1G00033650
rosa_rugosa Rorug05G0237300
rosa_samantha Rh5AG316500 Rh5BG327100 Rh5CG353300 Rh5DG338200
rosa_wichuraiana Rw5G029660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 711, 888
AatII GACGTC 1 cut(s) 943
AccB7I CCANNNNNTGG 1 cut(s) 668
AccI GTMKAC 1 cut(s) 552
AciI CCGC 2 cut(s) 901, 920
AclWI GGATC 4 cut(s) 101, 114, 845, 1040
AcoI YGGCCR 3 cut(s) 79, 829, 898
AcsI RAATTY 2 cut(s) 417, 523
AcyI GRCGYC 1 cut(s) 940
AfaI GTAC 4 cut(s) 319, 373, 399, 1128
AfiI CCNNNNNNNGG 3 cut(s) 345, 668, 791
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 8 cut(s) 287, 334, 512, 718, 803, 840, 1010, 1142
AjnI CCWGG 4 cut(s) 109, 644, 915, 954
AluBI AGCT 4 cut(s) 29, 280, 470, 685
AluI AGCT 4 cut(s) 29, 280, 470, 685
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 4 cut(s) 101, 114, 845, 1040
AoxI GGCC 7 cut(s) 79, 224, 437, 649, 829, 898, 913
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 2 cut(s) 5, 365
ApoI RAATTY 2 cut(s) 417, 523
Asp700I GAANNNNTTC 2 cut(s) 226, 418
AspS9I GGNCC 5 cut(s) 188, 649, 650, 745, 913
AsuC2I CCSGG 3 cut(s) 219, 339, 444
AsuHPI GGTGA 3 cut(s) 440, 650, 701
AvaII GGWCC 2 cut(s) 188, 745
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 831
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 2 cut(s) 653, 687
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 2 cut(s) 935, 986
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 352
BccI CCATC 4 cut(s) 200, 293, 398, 467
BciT130I CCWGG 4 cut(s) 111, 646, 917, 956
BcnI CCSGG 3 cut(s) 219, 339, 444
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 4 cut(s) 119, 128, 281, 704
BfmI CTRYAG 2 cut(s) 931, 1083
BisI GCNGC 3 cut(s) 6, 366, 901
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 3 cut(s) 7, 367, 902
Bme1390I CCNGG 7 cut(s) 111, 219, 339, 444, 646, 917, 956
Bme18I GGWCC 2 cut(s) 188, 745
BmgT120I GGNCC 5 cut(s) 188, 649, 650, 745, 913
BmiI GGNNCC 8 cut(s) 108, 190, 216, 643, 650, 651, 746, 914
BmrFI CCNGG 7 cut(s) 111, 219, 339, 444, 646, 917, 956
BmsI GCATC 2 cut(s) 300, 340
BpiI GAAGAC 2 cut(s) 935, 986
BpmI CTGGAG 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 456
BpuMI CCSGG 3 cut(s) 219, 339, 444
Bsa29I ATCGAT 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 940
BsaJI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 668, 791
Bse118I RCCGGY 3 cut(s) 320, 368, 497
Bse1I ACTGG 3 cut(s) 103, 673, 1028
Bse3DI GCAATG 3 cut(s) 393, 872, 1050
BseBI CCWGG 4 cut(s) 111, 646, 917, 956
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 3 cut(s) 345, 668, 791
BseMI GCAATG 3 cut(s) 393, 872, 1050
BseMII CTCAG 3 cut(s) 470, 762, 996
BseNI ACTGG 3 cut(s) 103, 673, 1028
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 352
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 687
BsiSI CCGG 7 cut(s) 78, 218, 321, 339, 369, 443, 498
BslFI GGGAC 5 cut(s) 174, 592, 751, 758, 767
BslI CCNNNNNNNGG 3 cut(s) 345, 668, 791
BsmAI GTCTC 1 cut(s) 660
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 5 cut(s) 174, 592, 751, 758, 767
BsnI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 653, 687
Bsp143I GATC 3 cut(s) 106, 850, 1045
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 2 cut(s) 901, 920
BspANI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BspCNI CTCAG 3 cut(s) 469, 763, 995
BspDI ATCGAT 1 cut(s) 558
BspLI GGNNCC 8 cut(s) 108, 190, 216, 643, 650, 651, 746, 914
BspMAI CTGCAG 1 cut(s) 935
BspPI GGATC 4 cut(s) 101, 114, 845, 1040
BsrDI GCAATG 3 cut(s) 393, 872, 1050
BsrFI RCCGGY 3 cut(s) 320, 368, 497
BsrI ACTGG 3 cut(s) 103, 673, 1028
BssAI RCCGGY 3 cut(s) 320, 368, 497
BssECI CCNNGG 5 cut(s) 82, 337, 585, 645, 748
BssMI GATC 3 cut(s) 106, 850, 1045
BssNI GRCGYC 1 cut(s) 940
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 82, 748
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 4 cut(s) 111, 646, 917, 956
Bst4CI ACNGT 1 cut(s) 1131
BstACI GRCGYC 1 cut(s) 940
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 456, 771, 982
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 3 cut(s) 109, 853, 1048
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 3 cut(s) 106, 850, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
BstNI CCWGG 4 cut(s) 111, 646, 917, 956
BstNSI RCATGY 4 cut(s) 44, 64, 398, 764
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 7 cut(s) 109, 217, 337, 442, 644, 915, 954
BstSFI CTRYAG 2 cut(s) 931, 1083
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 935, 986
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 2 cut(s) 755, 962
BstYI RGATCY 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
BsuTUI ATCGAT 1 cut(s) 558
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 928
BtsIMutI CAGTG 2 cut(s) 96, 928
Cac8I GCNNGC 1 cut(s) 62
Cfr10I RCCGGY 3 cut(s) 320, 368, 497
Cfr13I GGNCC 5 cut(s) 188, 649, 650, 745, 913
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 4 cut(s) 318, 372, 398, 1127
CviQI GTAC 4 cut(s) 318, 372, 398, 1127
DdeI CTNAG 3 cut(s) 456, 771, 982
DpnI GATC 3 cut(s) 108, 852, 1047
DpnII GATC 3 cut(s) 106, 850, 1045
DraI TTTAAA 1 cut(s) 522
EaeI YGGCCR 3 cut(s) 79, 829, 898
EciI GGCGGA 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 2 cut(s) 82, 748
Eco147I AGGCCT 2 cut(s) 226, 439
Eco24I GRGCYC 2 cut(s) 653, 687
Eco32I GATATC 1 cut(s) 968
Eco47I GGWCC 2 cut(s) 188, 745
Eco53kI GAGCTC 1 cut(s) 685
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 685
EcoO109I RGGNCCY 3 cut(s) 188, 649, 913
EcoO65I GGTNACC 1 cut(s) 446
EcoRII CCWGG 4 cut(s) 109, 644, 915, 954
EcoRV GATATC 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 82, 748
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 653, 687
ErhI CCWWGG 2 cut(s) 82, 748
Esp3I CGTCTC 1 cut(s) 660
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 5 cut(s) 174, 592, 751, 758, 767
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 6, 366, 901
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 2 cut(s) 653, 687
Fsp4HI GCNGC 3 cut(s) 6, 366, 901
FspBI CTAG 4 cut(s) 119, 128, 281, 704
GluI GCNGC 3 cut(s) 6, 366, 901
GsaI CCCAGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 7 cut(s) 81, 226, 439, 651, 831, 900, 915
HapII CCGG 7 cut(s) 78, 218, 321, 339, 369, 443, 498
Hin1I GRCGYC 1 cut(s) 940
HinfI GANTC 4 cut(s) 74, 156, 634, 836
HpaII CCGG 7 cut(s) 78, 218, 321, 339, 369, 443, 498
HphI GGTGA 3 cut(s) 440, 650, 701
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 5 cut(s) 151, 241, 604, 948, 1045
Hpy188III TCNNGA 6 cut(s) 119, 128, 263, 331, 1114, 1142
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 8 cut(s) 216, 237, 635, 686, 692, 855, 953, 1004
HpyCH4III ACNGT 1 cut(s) 1131
HpyCH4IV ACGT 2 cut(s) 123, 940
HpyCH4V TGCA 5 cut(s) 428, 536, 545, 933, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
HpyF3I CTNAG 3 cut(s) 456, 771, 982
HpySE526I ACGT 2 cut(s) 123, 940
Hsp92I GRCGYC 1 cut(s) 940
Kzo9I GATC 3 cut(s) 106, 850, 1045
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 300, 340
MaeI CTAG 4 cut(s) 119, 128, 281, 704
MaeII ACGT 2 cut(s) 123, 940
MaeIII GTNAC 2 cut(s) 446, 973
MalI GATC 3 cut(s) 108, 852, 1047
MboI GATC 3 cut(s) 106, 850, 1045
MboII GAAGA 2 cut(s) 935, 986
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 653, 687
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 772
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 2 cut(s) 226, 418
MscI TGGCCA 1 cut(s) 831
MseI TTAA 8 cut(s) 11, 489, 521, 1020, 1095, 1104, 1136, 1147
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 7 cut(s) 78, 218, 321, 339, 369, 443, 498
MspR9I CCNGG 7 cut(s) 111, 219, 339, 444, 646, 917, 956
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 4 cut(s) 111, 646, 917, 956
MwoI GCNNNNNNNGC 4 cut(s) 14, 232, 503, 542
NciI CCSGG 3 cut(s) 219, 339, 444
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 106, 850, 1045
NlaIV GGNNCC 8 cut(s) 108, 190, 216, 643, 650, 651, 746, 914
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 446
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 4 cut(s) 44, 64, 398, 764
PaeI GCATGC 1 cut(s) 64
PceI AGGCCT 2 cut(s) 226, 439
PciI ACATGT 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 226, 418
PfeI GAWTC 3 cut(s) 156, 634, 836
PflMI CCANNNNNTGG 1 cut(s) 668
PfoI TCCNGGA 2 cut(s) 217, 954
PkrI GCNGC 3 cut(s) 7, 367, 902
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 188
PscI ACATGT 1 cut(s) 40
PsiI TTATAA 2 cut(s) 711, 888
Psp124BI GAGCTC 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 4 cut(s) 109, 644, 915, 954
PspEI GGTNACC 1 cut(s) 446
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 4 cut(s) 109, 644, 915, 954
PspN4I GGNNCC 8 cut(s) 108, 190, 216, 643, 650, 651, 746, 914
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 5 cut(s) 188, 649, 650, 745, 913
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 4 cut(s) 319, 373, 399, 1128
RsaNI GTAC 4 cut(s) 318, 372, 398, 1127
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 687
SaqAI TTAA 8 cut(s) 11, 489, 521, 1020, 1095, 1104, 1136, 1147
SatI GCNGC 3 cut(s) 6, 366, 901
Sau3AI GATC 3 cut(s) 106, 850, 1045
Sau96I GGNCC 5 cut(s) 188, 649, 650, 745, 913
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 7 cut(s) 111, 219, 339, 444, 646, 917, 956
SduI GDGCHC 2 cut(s) 653, 687
SfaNI GCATC 2 cut(s) 300, 340
SfcI CTRYAG 2 cut(s) 931, 1083
SinI GGWCC 2 cut(s) 188, 745
SmiMI CAYNNNNRTG 1 cut(s) 101
SphI GCATGC 1 cut(s) 64
Sse9I AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
SseBI AGGCCT 2 cut(s) 226, 439
SsiI CCGC 2 cut(s) 901, 920
SspMI CTAG 4 cut(s) 119, 128, 281, 704
SstI GAGCTC 1 cut(s) 687
StuI AGGCCT 2 cut(s) 226, 439
StyD4I CCNGG 7 cut(s) 109, 217, 337, 442, 644, 915, 954
StyI CCWWGG 2 cut(s) 82, 748
TaaI ACNGT 1 cut(s) 1131
TaiI ACGT 2 cut(s) 126, 943
TaqI TCGA 2 cut(s) 93, 558
TaqII GACCGA 2 cut(s) 48, 588
TasI AATT 7 cut(s) 242, 417, 512, 523, 712, 1092, 1137
TatI WGTACW 1 cut(s) 397
TauI GCSGC 1 cut(s) 903
TfiI GAWTC 3 cut(s) 156, 634, 836
Tru1I TTAA 8 cut(s) 11, 489, 521, 1020, 1095, 1104, 1136, 1147
Tru9I TTAA 8 cut(s) 11, 489, 521, 1020, 1095, 1104, 1136, 1147
TscAI CASTG 2 cut(s) 103, 935
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 5, 365
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 554, 647, 986
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 103, 935
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 188, 745
XapI RAATTY 2 cut(s) 417, 523
XbaI TCTAGA 2 cut(s) 118, 127
XceI RCATGY 4 cut(s) 44, 64, 398, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 2 cut(s) 226, 418
XspI CTAG 4 cut(s) 119, 128, 281, 704
ZraI GACGTC 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.