Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Reverse (-)

2979511 .. 2982713

Gene Structure 3203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCTGCACATGCGACATCGGAGCCGGCCGTGAATCTCCCGGCGACGCAATTTGAATCTCAGGTTACAGAGCCGTTCGGGGTAACTCTTCTAGTTCGGCATCTTCCTGATGGAATTCCTCATGATATCGTCTCTCGGCTCTTTTCTCAGTACGGAGCTTCTGCTGTTCGTCCTTGCTCCGGTGGAAAATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAGCACATCGTCAATTAAATGGGCTGAGGTTTCTTGGCAAGGTTCTACAAGTACAGAGAGCCAATAAACCTAATGACAACAAGAAGTCTCGACAAATCGAAGAATCTGTGACCAAGGGGAATGCTTTCTCTACTGTTAGCACCAACAATGATTCAAAATCTGGGCAGATTCTTTCTGGCGAACCGATAGCTCCAAAACTCGGCATAGACTATCCATTTCCTCCTCACCTGCAATATGCTTACCCACCACCCGATGCAAATATATTAGCCAACATTACTAATGCCCTTATCGCTGTCCCACCGTTATACACCCAGGTGCTGCATCTGATGAACAAAATGAATCTTCCACCTCCTTTTCGCCTGGCCCTGCCCACACCACCTCTACCTAAAGCAGGCCCCCAACAAACTGACTTGGAGCATCAATCTAGTAGCGAGTCAGAGATGGAATCTGATGAGGATATAGGTACGTCAAAATCAGGAAGGAAGCGTGCTAGACATGGATTTCTTGTTGGTCTTGGTATGGACAAGGATGTGCCACATGAGACTGTTGGAGTGAAACCTTCGTCTTTGACCCCAAAAGAGATCCCTCGAATAAGAAAGAATAAACACGTTATGCAGATCAAGATCACCTCTAAAGTTACTCAAGACGAATATAAAGAGGAAAGTGAGAATGAAGACCCTGCAGACGAGCCCAAAGAAAAAGATTCAAATTTGAAACCCTTTGCAAGTTTAGAGGAATTGGAGAAAGGAAGGTTACCTCCACAGGATATTCTTTCACTCCCTATGTTCAAGAACTACACAGCTGGGAATCCGTCGGTTGTACTGTATATCAAAAACCTTGCCAAAGATGTTGTTATCGATGATTTCTATTACATATTTGGGTCACAGTTTGAAAGCAGCGAAGTAGCTAAATCAAGTCTTGGTGTGAGGCTAATGCAGGAAGGAAGGATGAGAGGGCAAGCTTTTTTGACATTTCCGTCTGTTGAAGTCGCACATCGTGCTCTGAATCTTGTAAATGGTTTTGTGTTCAAAGGCAAACCAATGATAATCCAGTTTGGCAGGACTCCTGGAGCAGCCAAGCCAAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

442

Amino Acids

48.71

Weight (kDa)

8.64

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	306 - 378	3.2e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	474
AasI	GACNNNNNNGTC	1 cut(s)	1213
Acc36I	ACCTGC	1 cut(s)	474
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	114, 946
AdeI	CACNNNGTG	1 cut(s)	1235
AfaI	GTAC	4 cut(s)	152, 291, 703, 1059
AfiI	CCNNNNNNNGG	3 cut(s)	179, 437, 629
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	9 cut(s)	56, 217, 393, 945, 952, 1027, 1130, 1223, 1267
AjnI	CCWGG	3 cut(s)	549, 597, 1303
AleI	CACNNNNGTG	1 cut(s)	551
AluBI	AGCT	6 cut(s)	158, 227, 428, 1040, 1145, 1199
AluI	AGCT	6 cut(s)	158, 227, 428, 1040, 1145, 1199
Alw21I	GWGCWC	1 cut(s)	1240
Alw26I	GTCTC	3 cut(s)	136, 330, 773
AlwI	GGATC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	556
AoxI	GGCC	3 cut(s)	27, 600, 631
ApeKI	GCWGC	5 cut(s)	5, 200, 556, 1134, 1310
ApoI	RAATTY	2 cut(s)	114, 946
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	601, 632
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	455, 856
BanII	GRGCYC	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	1240
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	187, 543, 1146, 1322
BccI	CCATC	2 cut(s)	104, 673
BceAI	ACGGC	2 cut(s)	14, 58
BciT130I	CCWGG	3 cut(s)	551, 599, 1305
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	136, 330, 773
BfaI	CTAG	3 cut(s)	92, 663, 729
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	5 cut(s)	6, 201, 557, 1135, 1311
BlsI	GCNGC	5 cut(s)	7, 202, 558, 1136, 1312
Bme1390I	CCNGG	4 cut(s)	41, 551, 599, 1305
BmgT120I	GGNCC	2 cut(s)	601, 632
BmiI	GGNNCC	2 cut(s)	24, 634
BmrFI	CCNGG	4 cut(s)	41, 551, 599, 1305
BmsI	GCATC	4 cut(s)	109, 481, 568, 664
BpiI	GAAGAC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	1326
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	222, 864
BpuMI	CCSGG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	1095
BsaBI	GATNNNNATC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	351, 549
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 437, 629
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	1288
Bse8I	GATNNNNATC	1 cut(s)	860
BseBI	CCWGG	3 cut(s)	551, 599, 1305
BseCI	ATCGAT	1 cut(s)	1095
BseDI	CCNNGG	2 cut(s)	351, 549
BseGI	GGATG	2 cut(s)	772, 1191
BseJI	GATNNNNATC	1 cut(s)	860
BseLI	CCNNNNNNNGG	3 cut(s)	179, 437, 629
BseMII	CTCAG	3 cut(s)	74, 161, 254
BseNI	ACTGG	1 cut(s)	1288
BseRI	GAGGAG	1 cut(s)	450
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	4 cut(s)	187, 543, 1146, 1322
BseYI	CCCAGC	1 cut(s)	1040
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	29, 602, 633
BshVI	ATCGAT	1 cut(s)	1095
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	1240
BsiSI	CCGG	3 cut(s)	26, 41, 180
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	179, 437, 629
BsmAI	GTCTC	3 cut(s)	136, 330, 773
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	29, 602, 633
Bsp1286I	GDGCHC	2 cut(s)	930, 1240
Bsp143I	GATC	3 cut(s)	819, 855, 861
BspANI	GGCC	3 cut(s)	29, 602, 633
BspCNI	CTCAG	3 cut(s)	73, 160, 255
BspDI	ATCGAT	1 cut(s)	1095
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	24, 634
BspMAI	CTGCAG	1 cut(s)	922
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	814
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	1288
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	351, 549
BssMI	GATC	3 cut(s)	819, 855, 861
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	3 cut(s)	551, 599, 1305
Bst4CI	ACNGT	5 cut(s)	373, 540, 784, 1062, 1125
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstC8I	GCNNGC	4 cut(s)	27, 631, 726, 1197
BstDEI	CTNAG	3 cut(s)	60, 147, 263
BstEII	GGTNACC	1 cut(s)	990
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	772, 1191
BstKTI	GATC	3 cut(s)	822, 858, 864
BstMAI	GTCTC	3 cut(s)	136, 330, 773
BstMBI	GATC	3 cut(s)	819, 855, 861
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 239, 527, 1235
BstNI	CCWGG	3 cut(s)	551, 599, 1305
BstNSI	RCATGY	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	990
BstSCI	CCNGG	4 cut(s)	39, 549, 597, 1303
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	4 cut(s)	187, 543, 1146, 1322
BstV2I	GAAGAC	1 cut(s)	918
BstX2I	RGATCY	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	819
BstZI	CGGCCG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	1095
BsuRI	GGCC	3 cut(s)	29, 602, 633
BsuTUI	ATCGAT	1 cut(s)	1095
BtsCI	GGATG	2 cut(s)	772, 1191
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	27, 631, 726, 1197
CaiI	CAGNNNCTG	1 cut(s)	556
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	601, 632
ClaI	ATCGAT	1 cut(s)	1095
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	151, 290, 702, 1058
CviAII	CATG	4 cut(s)	11, 122, 734, 776
CviQI	GTAC	4 cut(s)	151, 290, 702, 1058
DdeI	CTNAG	3 cut(s)	60, 147, 263
DpnI	GATC	3 cut(s)	821, 857, 863
DpnII	GATC	3 cut(s)	819, 855, 861
DraIII	CACNNNGTG	1 cut(s)	1235
DrdI	GACNNNNNNGTC	1 cut(s)	1213
DseDI	GACNNNNNNGTC	1 cut(s)	1213
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	930
Eco32I	GATATC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	990
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	990
EcoRI	GAATTC	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	549, 597, 1303
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	4 cut(s)	14, 125, 737, 779
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	4 cut(s)	10, 121, 733, 775
Fnu4HI	GCNGC	5 cut(s)	6, 201, 557, 1135, 1311
FokI	GGATG	2 cut(s)	779, 1198
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	5 cut(s)	6, 201, 557, 1135, 1311
FspBI	CTAG	3 cut(s)	92, 663, 729
GluI	GCNGC	5 cut(s)	6, 201, 557, 1135, 1311
GsaI	CCCAGC	1 cut(s)	1044
GsuI	CTGGAG	1 cut(s)	1326
HaeIII	GGCC	3 cut(s)	29, 602, 633
HapII	CCGG	3 cut(s)	26, 41, 180
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	14, 125, 737, 779
HindIII	AAGCTT	2 cut(s)	225, 1197
HpaII	CCGG	3 cut(s)	26, 41, 180
HphI	GGTGA	2 cut(s)	455, 856
Hpy188I	TCNGA	5 cut(s)	22, 564, 676, 688, 1242
Hpy188III	TCNNGA	8 cut(s)	107, 122, 217, 327, 714, 859, 881, 1027
Hpy99I	CGWCG	2 cut(s)	49, 1054
HpyAV	CCTTC	5 cut(s)	711, 807, 981, 1172, 1176
HpyCH4III	ACNGT	5 cut(s)	373, 540, 784, 1062, 1125
HpyCH4IV	ACGT	2 cut(s)	704, 846
HpyCH4V	TGCA	8 cut(s)	8, 469, 494, 559, 853, 920, 962, 1174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 239, 527, 1235
HpyF3I	CTNAG	3 cut(s)	60, 147, 263
HpySE526I	ACGT	2 cut(s)	704, 846
Hsp92II	CATG	4 cut(s)	14, 125, 737, 779
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	819, 855, 861
LmnI	GCTCC	6 cut(s)	22, 155, 182, 433, 652, 1307
Lsp1109I	GCAGC	4 cut(s)	187, 543, 1146, 1322
LweI	GCATC	4 cut(s)	109, 481, 568, 664
MaeI	CTAG	3 cut(s)	92, 663, 729
MaeII	ACGT	2 cut(s)	704, 846
MaeIII	GTNAC	6 cut(s)	64, 82, 346, 874, 990, 1119
MalI	GATC	3 cut(s)	821, 857, 863
MboI	GATC	3 cut(s)	819, 855, 861
MboII	GAAGA	5 cut(s)	80, 95, 350, 572, 923
MflI	RGATCY	1 cut(s)	819
MhlI	GDGCHC	2 cut(s)	930, 1240
MluCI	AATT	6 cut(s)	50, 114, 188, 251, 946, 974
MlyI	GAGTC	2 cut(s)	680, 1294
MmeI	TCCRAC	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	1040
MspI	CCGG	3 cut(s)	26, 41, 180
MspR9I	CCNGG	4 cut(s)	41, 551, 599, 1305
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	551, 599, 1305
MwoI	GCNNNNNNNGC	4 cut(s)	11, 239, 527, 1235
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	819, 855, 861
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	14, 125, 737, 779
NlaIV	GGNNCC	2 cut(s)	24, 634
NmeAIII	GCCGAG	2 cut(s)	115, 417
NmuCI	GTSAC	2 cut(s)	346, 1119
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	364
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	1303
PkrI	GCNGC	5 cut(s)	7, 202, 558, 1136, 1312
PleI	GAGTC	2 cut(s)	679, 1294
PpsI	GAGTC	2 cut(s)	679, 1294
Psp6I	CCWGG	3 cut(s)	549, 597, 1303
PspEI	GGTNACC	1 cut(s)	990
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	3 cut(s)	549, 597, 1303
PspN4I	GGNNCC	2 cut(s)	24, 634
PspPI	GGNCC	2 cut(s)	601, 632
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	819
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	4 cut(s)	152, 291, 703, 1059
RsaNI	GTAC	4 cut(s)	151, 290, 702, 1058
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	5 cut(s)	6, 201, 557, 1135, 1311
Sau3AI	GATC	3 cut(s)	819, 855, 861
Sau96I	GGNCC	2 cut(s)	601, 632
SchI	GAGTC	2 cut(s)	680, 1294
ScrFI	CCNGG	4 cut(s)	41, 551, 599, 1305
SduI	GDGCHC	2 cut(s)	930, 1240
SfaNI	GCATC	4 cut(s)	109, 481, 568, 664
SfcI	CTRYAG	1 cut(s)	918
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	237, 879
SmoI	CTYRAG	2 cut(s)	237, 879
Sse9I	AATT	6 cut(s)	50, 114, 188, 251, 946, 974
SspMI	CTAG	3 cut(s)	92, 663, 729
StyD4I	CCNGG	4 cut(s)	39, 549, 597, 1303
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	5 cut(s)	373, 540, 784, 1062, 1125
TaiI	ACGT	2 cut(s)	707, 849
TaqI	TCGA	4 cut(s)	328, 336, 826, 1095
TasI	AATT	6 cut(s)	50, 114, 188, 251, 946, 974
TatI	WGTACW	2 cut(s)	289, 1057
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	346, 1119
TseI	GCWGC	5 cut(s)	5, 200, 556, 1134, 1310
Tsp45I	GTSAC	2 cut(s)	346, 1119
TspDTI	ATGAA	4 cut(s)	237, 581, 590, 924
TspGWI	ACGGA	3 cut(s)	168, 1038, 1203
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	114, 946
XceI	RCATGY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	92, 663, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.