Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Reverse (-)

65365333 .. 65371018

Gene Structure 5686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGCAGCAGCAGCACCAACAACATCATCTGGGTTTTGAAGAACCACCAAGTAGCAGTAAGGCGAGTCTATTGATTCGTCACCTTCCAGAAGCCATTCCTGAAGAGACCCTGTTCCGCTTACTGTCCCACTATGGCGCTTCTTCTGTCCGCTCTTGCTCTCCTACCGGCAGGATGAGAAACTGTGCTTTTGTGGATTTCCAAACCGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGGCTACTAGCAATAGTGATAAGCCATTGCAGGATGGCAACAAGGATTCGGTTTCGTTGCCTCCCACTTCCACGTCATCTTCGGGGTACAATCCTACCGTCAAAAGGGAGACTCGGGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCCTCCTCACCTTGAGTATGCTTACCCACCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTAATTGCTGTTCCTCGCTTTTATACTCAGGTTTTGCACTTGATGAACAAAATGAATATTCCAGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCCGTGCCATTTCCCCCACCTCCCCCTCCTCTAGATGCAAAGCCTCCCTCAGCAGATATATCAAGTGACGAGTCTGAAATGGAGTCTTCAGATGAGGAGGCCTCTAGAGGAGCTTCAAGAGGAAAGAAGCGTGTCAAACGGGAATCTATTCTTGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAGATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGATGCCAATGATAAAGAAGAAGAATCCTCTGCTACAGATAACAATTGCCCAGAAAGTTGCTAACAATGAGCACAAAGATGATAGCACTACCAAAGTAGAAGAGCTTCCGGAGACTGAGAGTTCAGTTATTAACCCTTTTGCAACTCCAGAAGAACTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACTGCCGGGACTCCTGCCCCCGTGTTGTATATAAAGAACTTGGCAAAGGACATTGTTGGTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCATTGATGCAGCCAAATCTGCTCTGAGCGTGAAGCTTATGCAGGAAGGACGAATGAGGGGCCAAGCTTTCATAACATTTCCTTCAGTTGAACAAAGCCAATATGCTTTGAATCTAGTGAATGGGTATGTGTTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGTAATCCTGCAGCTGTTAAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

49.72

Weight (kDa)

7.7

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	23 - 90	4.9e-10	RNA recognition motif
RRM_1	PF00076	365 - 437	4.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	961
AciI	CCGC	2 cut(s)	115, 148
AcoI	YGGCCR	1 cut(s)	1327
AcuI	CTGAAG	4 cut(s)	120, 420, 702, 1233
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
AgsI	TTSAA	8 cut(s)	38, 238, 408, 747, 829, 1256, 1276, 1300
AjiI	CACGTC	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	8 cut(s)	584, 629, 743, 836, 958, 1201, 1232, 1343
AluI	AGCT	8 cut(s)	584, 629, 743, 836, 958, 1201, 1232, 1343
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	3 cut(s)	98, 380, 959
Ama87I	CYCGRG	2 cut(s)	390, 427
Aor13HI	TCCGGA	1 cut(s)	961
AoxI	GGCC	3 cut(s)	729, 1225, 1327
ApeKI	GCWGC	6 cut(s)	4, 7, 10, 626, 1175, 1340
Asp700I	GAANNNNTTC	3 cut(s)	93, 777, 957
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	785, 1225
AsuC2I	CCSGG	1 cut(s)	1075
AsuHPI	GGTGA	3 cut(s)	71, 452, 1139
AvaI	CYCGRG	2 cut(s)	390, 427
AvaII	GGWCC	1 cut(s)	785
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	927
BbvCI	CCTCAGC	2 cut(s)	245, 679
BbvI	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BccI	CCATC	2 cut(s)	305, 482
BceAI	ACGGC	1 cut(s)	1314
BclI	TGATCA	1 cut(s)	1314
BcnI	CCSGG	1 cut(s)	1075
BcoDI	GTCTC	3 cut(s)	98, 380, 959
BfaI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
BfmI	CTRYAG	4 cut(s)	624, 789, 887, 1338
BfoI	RGCGCY	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
BlsI	GCNGC	6 cut(s)	6, 9, 12, 628, 1177, 1342
Bme1390I	CCNGG	1 cut(s)	1075
Bme18I	GGWCC	1 cut(s)	785
BmeT110I	CYCGRG	2 cut(s)	390, 427
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	785, 1225
BmiI	GGNNCC	1 cut(s)	1226
BmrFI	CCNGG	1 cut(s)	1075
BmsI	GCATC	3 cut(s)	655, 846, 1162
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	2 cut(s)	984, 1014
Bpu10I	CCTNAGC	2 cut(s)	245, 679
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	1075
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 434, 488
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	1321
Bse3DI	GCAATG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	961
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	3 cut(s)	177, 316, 1317
BseLI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	5 cut(s)	236, 560, 693, 960, 1181
BseNI	ACTGG	1 cut(s)	1321
BseRI	GAGGAG	4 cut(s)	447, 648, 740, 753
BseXI	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BshFI	GGCC	3 cut(s)	731, 1227, 1329
BsiHKAI	GWGCWC	1 cut(s)	927
BsiHKCI	CYCGRG	2 cut(s)	390, 427
BsiSI	CCGG	3 cut(s)	165, 962, 1074
BslFI	GGGAC	3 cut(s)	109, 830, 1090
BslI	CCNNNNNNNGG	3 cut(s)	381, 434, 488
BsmAI	GTCTC	3 cut(s)	98, 380, 959
BsmFI	GGGAC	3 cut(s)	109, 830, 1090
BsnI	GGCC	3 cut(s)	731, 1227, 1329
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	390, 427
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp13I	TCCGGA	1 cut(s)	961
Bsp143I	GATC	2 cut(s)	410, 1314
BspACI	CCGC	2 cut(s)	115, 148
BspANI	GGCC	3 cut(s)	731, 1227, 1329
BspCNI	CTCAG	5 cut(s)	237, 559, 692, 961, 1182
BspEI	TCCGGA	1 cut(s)	961
BspLI	GGNNCC	1 cut(s)	1226
BspMAI	CTGCAG	3 cut(s)	628, 793, 1342
BspMI	ACCTGC	1 cut(s)	631
BspQI	GCTCTTC	2 cut(s)	606, 948
BspTNI	GGTCTC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	1321
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	410, 1314
Bst4CI	ACNGT	3 cut(s)	123, 182, 376
Bst6I	CTCTTC	3 cut(s)	96, 606, 948
BstDEI	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
BstF5I	GGATG	3 cut(s)	177, 316, 1317
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	413, 1317
BstMAI	GTCTC	3 cut(s)	98, 380, 959
BstMBI	GATC	2 cut(s)	410, 1314
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
BstSCI	CCNGG	1 cut(s)	1073
BstSFI	CTRYAG	4 cut(s)	624, 789, 887, 1338
BstV1I	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
BstV2I	GAAGAC	1 cut(s)	708
BsuRI	GGCC	3 cut(s)	731, 1227, 1329
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	177, 316, 1317
BveI	ACCTGC	1 cut(s)	631
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	785, 1225
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	595, 812
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
DpnI	GATC	2 cut(s)	412, 1316
DpnII	GATC	2 cut(s)	410, 1314
EaeI	YGGCCR	1 cut(s)	1327
Eam1104I	CTCTTC	3 cut(s)	96, 606, 948
EarI	CTCTTC	3 cut(s)	96, 606, 948
Eco147I	AGGCCT	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	120, 420, 702, 1233
Eco88I	CYCGRG	2 cut(s)	390, 427
FaeI	CATG	2 cut(s)	598, 815
FaqI	GGGAC	3 cut(s)	109, 830, 1090
FatI	CATG	2 cut(s)	594, 811
FbaI	TGATCA	1 cut(s)	1314
Fnu4HI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
FokI	GGATG	3 cut(s)	184, 323, 1304
Fsp4HI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
FspBI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
GsuI	CTGGAG	2 cut(s)	984, 1014
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	731, 1227, 1329
HapII	CCGG	3 cut(s)	165, 962, 1074
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	598, 815
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	1199, 1230
HpaII	CCGG	3 cut(s)	165, 962, 1074
HphI	GGTGA	3 cut(s)	71, 452, 1139
Hpy188I	TCNGA	5 cut(s)	415, 501, 706, 721, 1191
HpyAV	CCTTC	5 cut(s)	92, 200, 253, 1205, 1257
HpyCH4III	ACNGT	3 cut(s)	123, 182, 376
HpyCH4IV	ACGT	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
HpyF3I	CTNAG	5 cut(s)	245, 546, 679, 969, 1190
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	598, 815
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	1314
Kzo9I	GATC	2 cut(s)	410, 1314
LguI	GCTCTTC	2 cut(s)	606, 948
LmnI	GCTCC	3 cut(s)	589, 634, 740
Lsp1109I	GCAGC	6 cut(s)	16, 19, 22, 638, 1187, 1352
LweI	GCATC	3 cut(s)	655, 846, 1162
MaeI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	77, 695
MalI	GATC	2 cut(s)	412, 1316
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	410, 1314
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	2 cut(s)	522, 897
MlyI	GAGTC	5 cut(s)	73, 382, 710, 722, 1072
MmeI	TCCRAC	1 cut(s)	802
MroI	TCCGGA	1 cut(s)	961
MroXI	GAANNNNTTC	3 cut(s)	93, 777, 957
MseI	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
MslI	CAYNNNNRTG	2 cut(s)	816, 930
MspA1I	CMGCKG	1 cut(s)	1343
MspI	CCGG	3 cut(s)	165, 962, 1074
MspR9I	CCNGG	1 cut(s)	1075
MunI	CAATTG	1 cut(s)	897
MwoI	GCNNNNNNNGC	5 cut(s)	10, 221, 524, 1184, 1349
NciI	CCSGG	1 cut(s)	1075
NdeII	GATC	2 cut(s)	410, 1314
NlaIII	CATG	2 cut(s)	598, 815
NlaIV	GGNNCC	1 cut(s)	1226
NmuCI	GTSAC	2 cut(s)	77, 695
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	731
PciSI	GCTCTTC	2 cut(s)	606, 948
PdmI	GAANNNNTTC	3 cut(s)	93, 777, 957
PfeI	GAWTC	5 cut(s)	73, 323, 773, 877, 1276
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	6 cut(s)	6, 9, 12, 628, 1177, 1342
PleI	GAGTC	5 cut(s)	72, 382, 709, 721, 1072
PpsI	GAGTC	5 cut(s)	72, 382, 709, 721, 1072
PspN4I	GGNNCC	1 cut(s)	1226
PspPI	GGNCC	2 cut(s)	785, 1225
PstI	CTGCAG	3 cut(s)	628, 793, 1342
PvuII	CAGCTG	1 cut(s)	1343
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	816, 930
SapI	GCTCTTC	2 cut(s)	606, 948
SaqAI	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
SatI	GCNGC	6 cut(s)	5, 8, 11, 627, 1176, 1341
Sau3AI	GATC	2 cut(s)	410, 1314
Sau96I	GGNCC	2 cut(s)	785, 1225
SchI	GAGTC	5 cut(s)	73, 382, 710, 722, 1072
ScrFI	CCNGG	1 cut(s)	1075
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	3 cut(s)	655, 846, 1162
SfcI	CTRYAG	4 cut(s)	624, 789, 887, 1338
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	816, 930
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	522, 897
SseBI	AGGCCT	1 cut(s)	731
SsiI	CCGC	2 cut(s)	115, 148
SspI	AATATT	3 cut(s)	496, 577, 1041
SspMI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	1073
TaaI	ACNGT	3 cut(s)	123, 182, 376
TaiI	ACGT	1 cut(s)	353
TasI	AATT	2 cut(s)	522, 897
TfiI	GAWTC	5 cut(s)	73, 323, 773, 877, 1276
Tru1I	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
Tru9I	TTAA	5 cut(s)	266, 984, 1059, 1347, 1357
TseFI	GTSAC	2 cut(s)	77, 695
TseI	GCWGC	6 cut(s)	4, 7, 10, 626, 1175, 1340
Tsp45I	GTSAC	2 cut(s)	77, 695
TspDTI	ATGAA	4 cut(s)	578, 587, 828, 1225
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	785
XbaI	TCTAGA	2 cut(s)	661, 734
XmnI	GAANNNNTTC	3 cut(s)	93, 777, 957
XspI	CTAG	6 cut(s)	285, 662, 735, 842, 1010, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.