Rorug05G0328400

RNA-binding protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
39574282 .. 39576434
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0328400.1

Sequence Viewer

Length: 1257 bp
ATGAAGTTTTCCCAAATTCCCAATCTTGGTTCAGGACAAGGGAGTTGTTCTCGCCATGGGGAGAAGGCTGCGGAGAAGGCTGCACATGATAATATTGAAGCTGAGGTGAAGGGTGTGAAGAAGAAGTTGGTTTTAAGAGATGAAGTGAGCATCGAGGTTGAAGAGGAAATTGTGCAGCCCAGTGATGAGAGGGTACGGTTAAACCCGATATTGGAAGAGGAGGTTAGAGAAGATGTCATTGTACTAGAGGCACCAGTACATGGTGAAGAGGAACAATTAGGTGAGACCAAGTATAAACTGGCCATTGACACGGTGGAAAACATTGTGGCTATTGGAACTATCATCAGTGTCGACCTTGAGACCAAACAGCAAACAATCCATGGTGTTCCACTTGGAGAGGAGAATTTGCGGGTCTCTATCACAGAAACTGTTGTTCCTGAAGCTTTGCTGCCGTTTCCCATAAAAGATGAGATAGTGAAGGTCAAGGATGCCATTGGGACTTGTGTCGCTTGGCCGAGGAACCTTGTTATTGCCCCTGCACCTGGTGGGAAGGAAGACTTGCAAATCCTGCCATCGAATCTCCCTGCACCTTTAAAGGACTTATGCATTTGGGCAAACATTGGATTGCGGAATGGGGCAACCATCCACGCCACTTTTGGACCAGAACTTTTTGGTCATCCACATAAAGCCTTTGTCTTTAGAAAGGACATCTATGCTATGACACACTTGTTGGAAATTTCAGGCAGCTGCGTTGTTTTTTACATGAGCTACCTTCAAGGTGTGTTGAAGAAGGCTAAGATGAATGACATGGTCGCCTTTGTCGACCCTGCTCACACGGGTGCAAGTGGCTGTGGAAATCCAACCGAACGAGCTCGCTTAGTATCAAATCGGTTCATAAATGGGAAGTCTGGGCAGATTTATTTGGTCCCATATAATTCAGGTGGTCATTGGACGTTGTCTGCTGTGAATCCAGCTGAAGAAACCATTCACTTCATGGATCCGTTAAAGAGGCGACTCATCGCTGGTGAATGGAAAACAATTCTGGACAACTCCATTAAATTCTACAATGCACACAAGAATAAGAAAGGGAGGAAAACCATTCAATGGAAAAATCTTGCTGGCATTCCGGAGCAGAAAGATAGTAAGACTTGTGGGTATTGGATCATGCGCTACATGAAGGAGATAGTGGAAGATAAGAATTTGGAGTTTGCAGCTAAATGGGAAAGAAGGACAAACCTTATTTACACAGAAAATTAA

Protein Analysis

418

Amino Acids

46.71

Weight (kDa)

6.34

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 102 - 177 1.9e-10 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 306 - 403 3e-08 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 2 cut(s) 260, 1104
AccI GTMKAC 2 cut(s) 351, 822
AccIII TCCGGA 1 cut(s) 1126
AciI CCGC 3 cut(s) 71, 409, 628
AclWI GGATC 3 cut(s) 992, 1005, 1169
AcoI YGGCCR 2 cut(s) 300, 512
AcsI RAATTY 5 cut(s) 15, 403, 735, 1058, 1198
AcuI CTGAAG 2 cut(s) 459, 996
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 3 cut(s) 195, 243, 258
AfiI CCNNNNNNNGG 5 cut(s) 26, 211, 260, 542, 1104
AgsI TTSAA 5 cut(s) 98, 161, 776, 787, 1103
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AleI CACNNNNGTG 1 cut(s) 837
AluBI AGCT 7 cut(s) 101, 443, 747, 768, 872, 974, 1214
AluI AGCT 7 cut(s) 101, 443, 747, 768, 872, 974, 1214
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 3 cut(s) 278, 353, 418
AlwI GGATC 3 cut(s) 992, 1005, 1169
AlwNI CAGNNNCTG 1 cut(s) 428
Aor13HI TCCGGA 1 cut(s) 1126
AoxI GGCC 2 cut(s) 300, 512
ApeKI GCWGC 7 cut(s) 68, 80, 175, 448, 744, 747, 1211
ApoI RAATTY 5 cut(s) 15, 403, 735, 1058, 1198
Asp700I GAANNNNTTC 1 cut(s) 984
AspLEI GCGC 1 cut(s) 1170
AspS9I GGNCC 2 cut(s) 659, 925
AsuHPI GGTGA 4 cut(s) 118, 275, 293, 1037
AvaII GGWCC 2 cut(s) 659, 925
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 874
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 7 cut(s) 55, 67, 187, 435, 734, 756, 1223
BccI CCATC 2 cut(s) 580, 650
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 3 cut(s) 278, 353, 418
BfaI CTAG 1 cut(s) 245
BisI GCNGC 7 cut(s) 69, 81, 176, 449, 745, 748, 1212
BlsI GCNGC 7 cut(s) 70, 82, 177, 450, 746, 749, 1213
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 2 cut(s) 659, 925
BmgT120I GGNCC 2 cut(s) 659, 925
BmiI GGNNCC 4 cut(s) 252, 521, 927, 999
BmrFI CCNGG 1 cut(s) 543
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 159, 478
BmuI ACTGGG 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 34, 66
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 377
BsaI GGTCTC 3 cut(s) 278, 353, 418
BsaJI CCNNGG 3 cut(s) 55, 379, 515
BsaWI WCCGGW 1 cut(s) 1126
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 211, 260, 542, 1104
Bse1I ACTGG 3 cut(s) 180, 254, 303
BseAI TCCGGA 1 cut(s) 1126
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 55, 379, 515
BseGI GGATG 3 cut(s) 493, 642, 676
BseLI CCNNNNNNNGG 5 cut(s) 26, 211, 260, 542, 1104
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 180, 254, 303
BseRI GAGGAG 2 cut(s) 233, 413
BseXI GCAGC 7 cut(s) 55, 67, 187, 435, 734, 756, 1223
BsgI GTGCAG 4 cut(s) 66, 194, 522, 570
BshFI GGCC 2 cut(s) 302, 514
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 874
BsiSI CCGG 1 cut(s) 1127
BslFI GGGAC 2 cut(s) 511, 911
BslI CCNNNNNNNGG 5 cut(s) 26, 211, 260, 542, 1104
BsmAI GTCTC 3 cut(s) 278, 353, 418
BsmFI GGGAC 2 cut(s) 511, 911
BsmI GAATGC 1 cut(s) 1122
BsnI GGCC 2 cut(s) 302, 514
Bso31I GGTCTC 3 cut(s) 278, 353, 418
Bsp1286I GDGCHC 1 cut(s) 874
Bsp13I TCCGGA 1 cut(s) 1126
Bsp143I GATC 2 cut(s) 997, 1161
Bsp19I CCATGG 2 cut(s) 55, 379
BspACI CCGC 3 cut(s) 71, 409, 628
BspANI GGCC 2 cut(s) 302, 514
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 1126
BspLI GGNNCC 4 cut(s) 252, 521, 927, 999
BspPI GGATC 3 cut(s) 992, 1005, 1169
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 3 cut(s) 278, 353, 418
BsrI ACTGG 3 cut(s) 180, 254, 303
BssECI CCNNGG 3 cut(s) 55, 379, 515
BssMI GATC 2 cut(s) 997, 1161
BssT1I CCWWGG 2 cut(s) 55, 379
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 198, 313, 430
Bst6I CTCTTC 3 cut(s) 156, 210, 261
BstAPI GCANNNNNTGC 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 874, 1120
BstDEI CTNAG 3 cut(s) 102, 795, 877
BstDSI CCRYGG 2 cut(s) 55, 379
BstF5I GGATG 3 cut(s) 493, 642, 676
BstHHI GCGC 1 cut(s) 1170
BstKTI GATC 2 cut(s) 1000, 1164
BstMAI GTCTC 3 cut(s) 278, 353, 418
BstMBI GATC 2 cut(s) 997, 1161
BstMWI GCNNNNNNNGC 2 cut(s) 77, 568
BstNI CCWGG 1 cut(s) 543
BstPAI GACNNNNGTC 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 541
BstV1I GCAGC 7 cut(s) 55, 67, 187, 435, 734, 756, 1223
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BsuRI GGCC 2 cut(s) 302, 514
BtgI CCRYGG 2 cut(s) 55, 379
BtgZI GCGATG 1 cut(s) 1003
BtsCI GGATG 3 cut(s) 493, 642, 676
BtsIMutI CAGTG 2 cut(s) 187, 352
Cac8I GCNNGC 2 cut(s) 874, 1120
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 1170
Cfr13I GGNCC 2 cut(s) 659, 925
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 3 cut(s) 194, 242, 257
CviAII CATG 9 cut(s) 56, 86, 260, 380, 763, 808, 994, 1165, 1174
CviQI GTAC 3 cut(s) 194, 242, 257
DdeI CTNAG 3 cut(s) 102, 795, 877
DpnI GATC 2 cut(s) 999, 1163
DpnII GATC 2 cut(s) 997, 1161
DraI TTTAAA 1 cut(s) 594
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 300, 512
Eam1104I CTCTTC 3 cut(s) 156, 210, 261
EarI CTCTTC 3 cut(s) 156, 210, 261
Ecl136II GAGCTC 1 cut(s) 872
Eco130I CCWWGG 2 cut(s) 55, 379
Eco24I GRGCYC 1 cut(s) 874
Eco31I GGTCTC 3 cut(s) 278, 353, 418
Eco47I GGWCC 2 cut(s) 659, 925
Eco53kI GAGCTC 1 cut(s) 872
Eco57I CTGAAG 2 cut(s) 459, 996
EcoICRI GAGCTC 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 55, 379
EcoT22I ATGCAT 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 874
ErhI CCWWGG 2 cut(s) 55, 379
FaeI CATG 9 cut(s) 59, 89, 263, 383, 766, 811, 997, 1168, 1177
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 2 cut(s) 511, 911
FatI CATG 9 cut(s) 55, 85, 259, 379, 762, 807, 993, 1164, 1173
FauI CCCGC 1 cut(s) 402
FblI GTMKAC 2 cut(s) 351, 822
Fnu4HI GCNGC 7 cut(s) 69, 81, 176, 449, 745, 748, 1212
FokI GGATG 3 cut(s) 500, 629, 663
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 7 cut(s) 69, 81, 176, 449, 745, 748, 1212
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 1169
GluI GCNGC 7 cut(s) 69, 81, 176, 449, 745, 748, 1212
HaeIII GGCC 2 cut(s) 302, 514
HapII CCGG 1 cut(s) 1127
HhaI GCGC 1 cut(s) 1170
Hin1II CATG 9 cut(s) 59, 89, 263, 383, 766, 811, 997, 1168, 1177
Hin6I GCGC 1 cut(s) 1168
HinP1I GCGC 1 cut(s) 1168
HincII GTYRAC 2 cut(s) 352, 823
HindII GTYRAC 2 cut(s) 352, 823
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 577, 967, 1014
HpaII CCGG 1 cut(s) 1127
HphI GGTGA 4 cut(s) 118, 275, 293, 1037
Hpy166II GTNNAC 2 cut(s) 352, 823
Hpy188III TCNNGA 4 cut(s) 33, 437, 1043, 1127
Hpy8I GTNNAC 2 cut(s) 352, 823
HpyAV CCTTC 9 cut(s) 58, 70, 103, 472, 544, 782, 784, 1171, 1221
HpyCH4III ACNGT 3 cut(s) 198, 313, 430
HpyCH4IV ACGT 1 cut(s) 953
HpyCH4V TGCA 9 cut(s) 83, 175, 539, 562, 587, 606, 842, 1070, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 568
HpyF3I CTNAG 3 cut(s) 102, 795, 877
HpySE526I ACGT 1 cut(s) 953
Hsp92II CATG 9 cut(s) 59, 89, 263, 383, 766, 811, 997, 1168, 1177
HspAI GCGC 1 cut(s) 1168
Kpn2I TCCGGA 1 cut(s) 1126
Kzo9I GATC 2 cut(s) 997, 1161
LmnI GCTCC 1 cut(s) 1129
Lsp1109I GCAGC 7 cut(s) 55, 67, 187, 435, 734, 756, 1223
LweI GCATC 2 cut(s) 159, 478
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 953
MalI GATC 2 cut(s) 999, 1163
MboI GATC 2 cut(s) 997, 1161
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 1 cut(s) 874
MlsI TGGCCA 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 1008
MmeI TCCRAC 2 cut(s) 711, 884
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 608
MroI TCCGGA 1 cut(s) 1126
MroXI GAANNNNTTC 1 cut(s) 984
MscI TGGCCA 1 cut(s) 302
MseI TTAA 6 cut(s) 134, 200, 593, 1004, 1056, 1255
MslI CAYNNNNRTG 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 2 cut(s) 747, 974
MspI CCGG 1 cut(s) 1127
MspR9I CCNGG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 1122
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 77, 568
NcoI CCATGG 2 cut(s) 55, 379
NdeII GATC 2 cut(s) 997, 1161
NlaIII CATG 9 cut(s) 59, 89, 263, 383, 766, 811, 997, 1168, 1177
NlaIV GGNNCC 4 cut(s) 252, 521, 927, 999
NmeAIII GCCGAG 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 608
OliI CACNNNNGTG 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PctI GAATGC 1 cut(s) 1122
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 2 cut(s) 577, 967
PflFI GACNNNGTC 2 cut(s) 809, 955
PflMI CCANNNNNTGG 2 cut(s) 260, 1104
PkrI GCNGC 7 cut(s) 70, 82, 177, 450, 746, 749, 1213
PleI GAGTC 1 cut(s) 1008
PpsI GAGTC 1 cut(s) 1008
PshAI GACNNNNGTC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 874
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 252, 521, 927, 999
PspPI GGNCC 2 cut(s) 659, 925
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 997
PsyI GACNNNGTC 2 cut(s) 809, 955
PvuII CAGCTG 2 cut(s) 747, 974
RsaI GTAC 3 cut(s) 195, 243, 258
RsaNI GTAC 3 cut(s) 194, 242, 257
RseI CAYNNNNRTG 1 cut(s) 837
SacI GAGCTC 1 cut(s) 874
SalI GTCGAC 2 cut(s) 350, 821
SaqAI TTAA 6 cut(s) 134, 200, 593, 1004, 1056, 1255
SatI GCNGC 7 cut(s) 69, 81, 176, 449, 745, 748, 1212
Sau3AI GATC 2 cut(s) 997, 1161
Sau96I GGNCC 2 cut(s) 659, 925
SchI GAGTC 1 cut(s) 1008
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 2 cut(s) 159, 478
SinI GGWCC 2 cut(s) 659, 925
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SsiI CCGC 3 cut(s) 71, 409, 628
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 874
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 2 cut(s) 55, 379
TaaI ACNGT 3 cut(s) 198, 313, 430
TaiI ACGT 1 cut(s) 956
TaqI TCGA 4 cut(s) 153, 351, 575, 822
TatI WGTACW 2 cut(s) 241, 256
TfiI GAWTC 2 cut(s) 577, 967
Tru1I TTAA 6 cut(s) 134, 200, 593, 1004, 1056, 1255
Tru9I TTAA 6 cut(s) 134, 200, 593, 1004, 1056, 1255
TscAI CASTG 2 cut(s) 187, 352
TseI GCWGC 7 cut(s) 68, 80, 175, 448, 744, 747, 1211
TspDTI ATGAA 6 cut(s) 17, 156, 815, 883, 982, 1190
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 2 cut(s) 187, 352
Tth111I GACNNNGTC 2 cut(s) 809, 955
Van91I CCANNNNNTGG 2 cut(s) 260, 1104
VpaK11BI GGWCC 2 cut(s) 659, 925
XapI RAATTY 5 cut(s) 15, 403, 735, 1058, 1198
XcmI CCANNNNNNNNNTGG 4 cut(s) 295, 310, 653, 991
XmiI GTMKAC 2 cut(s) 351, 822
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.