Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Reverse (-)

65650112 .. 65654612

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCAGCAGCAACACCAACATCATCTGGGTTTTGAAGAACCACGGAGTAGCAGTAAGGCGAGTCTATTGATTCGTCACCTTCCAGAAGCCATTCCTGAAGAGACCCTGTTCCGCTTACTGTCCCACTATGGCGCTTCTTCTGTCCGCTCTTGCTCTCCTACCGGCAGGATGAGAAACTGTGCTTTTGTGGATTTCCAAAACGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGCTGAGGTTTCTTGGGAAGGTTTTAAAAGTGGAGAGGGCTACTAGCAATAGTGATAAGCCATTGCAGGAAGGCAAGAAGGATTCGGTTTCTGCGCCTCCCACTTCCACGTCATCTTCGGGGTACAATCCTACCGTCAAAAGGGAGACTCGGGAAACTGAAGTTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCCTCCTTACCTTGAGTATGCTTACCCACCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCCTCGCTTTTATACTCAGGTTTTGCACTTGATGAACAAAATGAATATTCCCGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCCGTGCCATTTCCCCCACCTCCCCCTCCTCTAGATGCAAAGCCTCCCTCAGCAGATATATCAAGTGACGAGTCTGAAATGGAGTCTTCAGATGAGGAGGCCTCTAGAGGAGCTTCAAGAGGAAAGAAGCGTGTCAAACGGGAATCTATTCTTGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAGATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGATGCCAATGATAAAGAAGAAGAATCCTCTGCTACAGATAACAATTGCCCAGAAAGTTGCTAACAATGAGCACAAAGATGATAGCACTACCAAAGTAGAAGAGCTTCCGGAGACTGAGAGTTCAGTTATTAACCCTTTTGCAACTCCAGAAGAACTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACTGCCGGGACTCCTGCCCCCGTGTTGTATATAAAGAACTTGGCAAAGGACATTGTTGGTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCATTGATGCAGCCAAATCTGCTCTGAGCGTGAAGCTTATGCAGGAAGGACGAATGAGGGGCCAAGCTTTCATAACATTTCCTTCAGTTGAACAAAGCCAATATGCTTTGAATCTAGTGAATGGGTATGTGTTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGTAATCCTGCAGCTGTTAAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

49.68

Weight (kDa)

8.5

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	22 - 89	3e-10	RNA recognition motif
RRM_1	PF00076	364 - 436	4.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccBSI	CCGCTC	2 cut(s)	147, 581
AccIII	TCCGGA	1 cut(s)	958
AciI	CCGC	3 cut(s)	112, 145, 579
AcoI	YGGCCR	1 cut(s)	1324
AcuI	CTGAAG	4 cut(s)	117, 417, 699, 1230
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	378, 431, 485
AgsI	TTSAA	8 cut(s)	35, 235, 405, 744, 826, 1253, 1273, 1297
AjiI	CACGTC	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AluBI	AGCT	7 cut(s)	626, 740, 833, 955, 1198, 1229, 1340
AluI	AGCT	7 cut(s)	626, 740, 833, 955, 1198, 1229, 1340
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	3 cut(s)	95, 377, 956
Ama87I	CYCGRG	2 cut(s)	387, 424
Aor13HI	TCCGGA	1 cut(s)	958
AoxI	GGCC	3 cut(s)	726, 1222, 1324
ApeKI	GCWGC	5 cut(s)	4, 7, 623, 1172, 1337
Asp700I	GAANNNNTTC	3 cut(s)	90, 774, 954
AspLEI	GCGC	2 cut(s)	134, 334
AspS9I	GGNCC	2 cut(s)	782, 1222
AsuC2I	CCSGG	1 cut(s)	1072
AsuHPI	GGTGA	2 cut(s)	68, 1136
AvaI	CYCGRG	2 cut(s)	387, 424
AvaII	GGWCC	1 cut(s)	782
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	924
BbvCI	CCTCAGC	2 cut(s)	242, 676
BbvI	GCAGC	5 cut(s)	16, 19, 635, 1184, 1349
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	1 cut(s)	1311
BclI	TGATCA	1 cut(s)	1311
BcnI	CCSGG	1 cut(s)	1072
BcoDI	GTCTC	3 cut(s)	95, 377, 956
BfaI	CTAG	6 cut(s)	282, 659, 732, 839, 1007, 1277
BfmI	CTRYAG	4 cut(s)	621, 786, 884, 1335
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	5 cut(s)	5, 8, 624, 1173, 1338
BlsI	GCNGC	5 cut(s)	6, 9, 625, 1174, 1339
Bme1390I	CCNGG	1 cut(s)	1072
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	2 cut(s)	387, 424
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	782, 1222
BmiI	GGNNCC	1 cut(s)	1223
BmrFI	CCNGG	1 cut(s)	1072
BmsI	GCATC	3 cut(s)	652, 843, 1159
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	713, 745
BpmI	CTGGAG	2 cut(s)	981, 1011
Bpu10I	CCTNAGC	2 cut(s)	242, 676
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	1072
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	41, 425
BsaWI	WCCGGW	1 cut(s)	958
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 431, 485
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	1318
Bse3DI	GCAATG	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	958
BseDI	CCNNGG	2 cut(s)	41, 425
BseGI	GGATG	2 cut(s)	174, 1314
BseLI	CCNNNNNNNGG	3 cut(s)	378, 431, 485
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	5 cut(s)	233, 557, 690, 957, 1178
BseNI	ACTGG	1 cut(s)	1318
BseRI	GAGGAG	3 cut(s)	645, 737, 750
BseXI	GCAGC	5 cut(s)	16, 19, 635, 1184, 1349
BshFI	GGCC	3 cut(s)	728, 1224, 1326
BsiHKAI	GWGCWC	1 cut(s)	924
BsiHKCI	CYCGRG	2 cut(s)	387, 424
BsiSI	CCGG	3 cut(s)	162, 959, 1071
BslFI	GGGAC	3 cut(s)	106, 827, 1087
BslI	CCNNNNNNNGG	3 cut(s)	378, 431, 485
BsmAI	GTCTC	3 cut(s)	95, 377, 956
BsmFI	GGGAC	3 cut(s)	106, 827, 1087
BsnI	GGCC	3 cut(s)	728, 1224, 1326
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	387, 424
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp13I	TCCGGA	1 cut(s)	958
Bsp143I	GATC	2 cut(s)	407, 1311
BspACI	CCGC	3 cut(s)	112, 145, 579
BspANI	GGCC	3 cut(s)	728, 1224, 1326
BspCNI	CTCAG	5 cut(s)	234, 556, 689, 958, 1179
BspEI	TCCGGA	1 cut(s)	958
BspLI	GGNNCC	1 cut(s)	1223
BspMAI	CTGCAG	3 cut(s)	625, 790, 1339
BspMI	ACCTGC	1 cut(s)	628
BspQI	GCTCTTC	2 cut(s)	603, 945
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	2 cut(s)	147, 581
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	1318
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	41, 425
BssMI	GATC	2 cut(s)	407, 1311
Bst4CI	ACNGT	3 cut(s)	120, 179, 373
Bst6I	CTCTTC	3 cut(s)	93, 603, 945
BstDEI	CTNAG	5 cut(s)	242, 543, 676, 966, 1187
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	174, 1314
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 334
BstKTI	GATC	2 cut(s)	410, 1314
BstMAI	GTCTC	3 cut(s)	95, 377, 956
BstMBI	GATC	2 cut(s)	407, 1311
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 521, 1181, 1346
BstSCI	CCNGG	1 cut(s)	1070
BstSFI	CTRYAG	4 cut(s)	621, 786, 884, 1335
BstV1I	GCAGC	5 cut(s)	16, 19, 635, 1184, 1349
BstV2I	GAAGAC	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	728, 1224, 1326
BtgI	CCRYGG	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	174, 1314
BveI	ACCTGC	1 cut(s)	628
CfoI	GCGC	2 cut(s)	134, 334
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	782, 1222
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	592, 809
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	5 cut(s)	242, 543, 676, 966, 1187
DpnI	GATC	2 cut(s)	409, 1313
DpnII	GATC	2 cut(s)	407, 1311
DraI	TTTAAA	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	1324
Eam1104I	CTCTTC	3 cut(s)	93, 603, 945
EarI	CTCTTC	3 cut(s)	93, 603, 945
Eco147I	AGGCCT	1 cut(s)	728
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	782
Eco57I	CTGAAG	4 cut(s)	117, 417, 699, 1230
Eco88I	CYCGRG	2 cut(s)	387, 424
FaeI	CATG	2 cut(s)	595, 812
FaqI	GGGAC	3 cut(s)	106, 827, 1087
FatI	CATG	2 cut(s)	591, 808
FauI	CCCGC	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	1311
Fnu4HI	GCNGC	5 cut(s)	5, 8, 624, 1173, 1338
FokI	GGATG	2 cut(s)	181, 1301
Fsp4HI	GCNGC	5 cut(s)	5, 8, 624, 1173, 1338
FspBI	CTAG	6 cut(s)	282, 659, 732, 839, 1007, 1277
GlaI	GCGC	2 cut(s)	133, 333
GluI	GCNGC	5 cut(s)	5, 8, 624, 1173, 1338
GsuI	CTGGAG	2 cut(s)	981, 1011
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	728, 1224, 1326
HapII	CCGG	3 cut(s)	162, 959, 1071
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	134, 334
Hin1II	CATG	2 cut(s)	595, 812
Hin6I	GCGC	2 cut(s)	132, 332
HinP1I	GCGC	2 cut(s)	132, 332
HindIII	AAGCTT	2 cut(s)	1196, 1227
HpaII	CCGG	3 cut(s)	162, 959, 1071
HphI	GGTGA	2 cut(s)	68, 1136
Hpy188I	TCNGA	5 cut(s)	412, 498, 703, 718, 1188
HpyAV	CCTTC	7 cut(s)	89, 197, 250, 302, 310, 1202, 1254
HpyCH4III	ACNGT	3 cut(s)	120, 179, 373
HpyCH4IV	ACGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 521, 1181, 1346
HpyF3I	CTNAG	5 cut(s)	242, 543, 676, 966, 1187
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	595, 812
HspAI	GCGC	2 cut(s)	132, 332
Kpn2I	TCCGGA	1 cut(s)	958
Ksp22I	TGATCA	1 cut(s)	1311
Kzo9I	GATC	2 cut(s)	407, 1311
LguI	GCTCTTC	2 cut(s)	603, 945
LmnI	GCTCC	3 cut(s)	586, 631, 737
Lsp1109I	GCAGC	5 cut(s)	16, 19, 635, 1184, 1349
LweI	GCATC	3 cut(s)	652, 843, 1159
MaeI	CTAG	6 cut(s)	282, 659, 732, 839, 1007, 1277
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	74, 692
MalI	GATC	2 cut(s)	409, 1313
MbiI	CCGCTC	2 cut(s)	147, 581
MboI	GATC	2 cut(s)	407, 1311
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	1 cut(s)	894
MlyI	GAGTC	5 cut(s)	70, 379, 707, 719, 1069
MmeI	TCCRAC	1 cut(s)	799
MroI	TCCGGA	1 cut(s)	958
MroXI	GAANNNNTTC	3 cut(s)	90, 774, 954
MseI	TTAA	5 cut(s)	263, 981, 1056, 1344, 1354
MslI	CAYNNNNRTG	2 cut(s)	813, 927
MspA1I	CMGCKG	1 cut(s)	1340
MspI	CCGG	3 cut(s)	162, 959, 1071
MspR9I	CCNGG	1 cut(s)	1072
MunI	CAATTG	1 cut(s)	894
MwoI	GCNNNNNNNGC	4 cut(s)	218, 521, 1181, 1346
NciI	CCSGG	1 cut(s)	1072
NdeII	GATC	2 cut(s)	407, 1311
NlaIII	CATG	2 cut(s)	595, 812
NlaIV	GGNNCC	1 cut(s)	1223
NmuCI	GTSAC	2 cut(s)	74, 692
PaqCI	CACCTGC	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	728
PciSI	GCTCTTC	2 cut(s)	603, 945
PdmI	GAANNNNTTC	3 cut(s)	90, 774, 954
PfeI	GAWTC	5 cut(s)	70, 320, 770, 874, 1273
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	5 cut(s)	6, 9, 625, 1174, 1339
PleI	GAGTC	5 cut(s)	69, 379, 706, 718, 1069
PpsI	GAGTC	5 cut(s)	69, 379, 706, 718, 1069
PspN4I	GGNNCC	1 cut(s)	1223
PspPI	GGNCC	2 cut(s)	782, 1222
PstI	CTGCAG	3 cut(s)	625, 790, 1339
PvuII	CAGCTG	1 cut(s)	1340
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	813, 927
SapI	GCTCTTC	2 cut(s)	603, 945
SaqAI	TTAA	5 cut(s)	263, 981, 1056, 1344, 1354
SatI	GCNGC	5 cut(s)	5, 8, 624, 1173, 1338
Sau3AI	GATC	2 cut(s)	407, 1311
Sau96I	GGNCC	2 cut(s)	782, 1222
SchI	GAGTC	5 cut(s)	70, 379, 707, 719, 1069
ScrFI	CCNGG	1 cut(s)	1072
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	3 cut(s)	652, 843, 1159
SfcI	CTRYAG	4 cut(s)	621, 786, 884, 1335
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	2 cut(s)	813, 927
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	894
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	3 cut(s)	112, 145, 579
SspI	AATATT	3 cut(s)	493, 574, 1038
SspMI	CTAG	6 cut(s)	282, 659, 732, 839, 1007, 1277
StuI	AGGCCT	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	1070
TaaI	ACNGT	3 cut(s)	120, 179, 373
TaiI	ACGT	1 cut(s)	350
TasI	AATT	1 cut(s)	894
TfiI	GAWTC	5 cut(s)	70, 320, 770, 874, 1273
Tru1I	TTAA	5 cut(s)	263, 981, 1056, 1344, 1354
Tru9I	TTAA	5 cut(s)	263, 981, 1056, 1344, 1354
TseFI	GTSAC	2 cut(s)	74, 692
TseI	GCWGC	5 cut(s)	4, 7, 623, 1172, 1337
Tsp45I	GTSAC	2 cut(s)	74, 692
TspDTI	ATGAA	4 cut(s)	575, 584, 825, 1222
TspGWI	ACGGA	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	782
XbaI	TCTAGA	2 cut(s)	658, 731
XmnI	GAANNNNTTC	3 cut(s)	90, 774, 954
XspI	CTAG	6 cut(s)	282, 659, 732, 839, 1007, 1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.