Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Forward (+)

24858604 .. 24864667

Gene Structure 6064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCAGCAGCAGCAGCAGCAACACCAACATCATCTGGGTTTTGAAGAACCACCAAGTAGCAGTAAGGCGAGTCTATTGATTCGTCACCTTCCAGAAGCCATTCCTGAAGAGACCCTGTTCCGCTTACTGTCCCACTATGGCGCTTCTTCTGTCCGCTCTTGCTCTCCTACCGGCAGGTTGAGAAATTGTGCTTTTGTGGATTTTCAAAACGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAATGGGTTGAGGTTTCTTGGGAAGGTGTTAAAAGTGGAGAGGGCTACTAGCAATAGTGATAAGCCATTGCAGGATGGCAACAAGGATTCGGTTTCTGTGCCTCCCACTTCCACGTCATCTTTGGGGTACAATCCTACCATCAAAAGGGAGACTCAAGAAACTGAAGTTTCTTCAAGATCAGAGCCTATTGCCCCGAGGCTTGGTGTAGATTACTGCTTTCCTCCTCACCTTGAGTATGCTTACCCACCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCCTCGCTTTTATACGCAGGTTTTGCACTTGATGAACAAAATGAATATTCCAGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCCGTGCCATTTCCCCCACCTCCCCCTCCTCTAGATGCAAAGCCTCCCTCAGCAGATATATCGAGTGACGAGTCTGAAATGGAGTCTTCAGATGAGGAGGCCTCTAGAGGAGCTTCAAGAGGAAAGAAGCGTGTCAAACGGGAATCTATTCTTGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAGATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGATGCCAATGATAAAGAAGAAGAATCCTCTGCTACAGATAACAATTGCCCAGAAAGTTGCTAACAATGAGCACAAAGATGATAGCACTACCAAAGTAGAAGAGCTTCCGGAGACTGGGAGTTCAGTTATTAACCCTTTTGCAACTCCAGAAGAATTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACTGCCGGGACTCCTGCCCCCGTGTTGTATATAAAGAACTTGGCGAAGGACATTGTTGGTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCATTGATGCAGCCAAATCTGCTCTGAGCGTGAAGCTTATGCAGGAAGGACGAATGAGGGGCCAAGCTTTTGTAACATTTCCTTCAGTTGAACAAAGCCAATATGCTTTGAATCTAGTGAATGGGTATGTGTTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGTAATCCTGCAGCTGTTAAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

455

Amino Acids

49.97

Weight (kDa)

7.7

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	25 - 92	1.9e-10	RNA recognition motif
RRM_1	PF00076	368 - 440	1.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	3 cut(s)	165, 547, 640
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	970
AciI	CCGC	2 cut(s)	121, 154
AcoI	YGGCCR	1 cut(s)	1336
AcuI	CTGAAG	4 cut(s)	126, 426, 711, 1242
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	4 cut(s)	387, 443, 497, 977
AgsI	TTSAA	9 cut(s)	44, 206, 244, 417, 756, 838, 1265, 1285, 1309
AjiI	CACGTC	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AluBI	AGCT	8 cut(s)	593, 638, 752, 845, 967, 1210, 1241, 1352
AluI	AGCT	8 cut(s)	593, 638, 752, 845, 967, 1210, 1241, 1352
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	3 cut(s)	104, 386, 968
Ama87I	CYCGRG	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	970
AoxI	GGCC	3 cut(s)	738, 1234, 1336
ApeKI	GCWGC	8 cut(s)	4, 7, 10, 13, 16, 635, 1184, 1349
Asp700I	GAANNNNTTC	3 cut(s)	99, 786, 966
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	794, 1234
AsuC2I	CCSGG	1 cut(s)	1084
AsuHPI	GGTGA	3 cut(s)	77, 461, 1148
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	794
BarI	GAAGNNNNNNTAC	2 cut(s)	951, 983
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	936
BbvCI	CCTCAGC	1 cut(s)	688
BbvI	GCAGC	8 cut(s)	16, 19, 22, 25, 28, 647, 1196, 1361
BccI	CCATC	3 cut(s)	311, 389, 491
BceAI	ACGGC	1 cut(s)	1323
BcgI	CGANNNNNNTGC	2 cut(s)	681, 715
BclI	TGATCA	1 cut(s)	1323
BcnI	CCSGG	1 cut(s)	1084
BcoDI	GTCTC	3 cut(s)	104, 386, 968
BfaI	CTAG	5 cut(s)	291, 671, 744, 851, 1289
BfmI	CTRYAG	4 cut(s)	633, 798, 896, 1347
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	3 cut(s)	165, 547, 640
BisI	GCNGC	8 cut(s)	5, 8, 11, 14, 17, 636, 1185, 1350
BlsI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 637, 1186, 1351
Bme1390I	CCNGG	1 cut(s)	1084
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	794, 1234
BmiI	GGNNCC	1 cut(s)	1235
BmrFI	CCNGG	1 cut(s)	1084
BmrI	ACTGGG	1 cut(s)	987
BmsI	GCATC	3 cut(s)	664, 855, 1171
BmuI	ACTGGG	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	2 cut(s)	993, 1023
Bpu10I	CCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	2 cut(s)	381, 494
BpuMI	CCSGG	1 cut(s)	1084
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	970
Bsc4I	CCNNNNNNNGG	4 cut(s)	387, 443, 497, 977
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	982, 1330
Bse3DI	GCAATG	1 cut(s)	308
BseAI	TCCGGA	1 cut(s)	970
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	322, 1326
BseLI	CCNNNNNNNGG	4 cut(s)	387, 443, 497, 977
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	702, 1190
BseNI	ACTGG	2 cut(s)	982, 1330
BseRI	GAGGAG	4 cut(s)	456, 657, 749, 762
BseXI	GCAGC	8 cut(s)	16, 19, 22, 25, 28, 647, 1196, 1361
BshFI	GGCC	3 cut(s)	740, 1236, 1338
BsiHKAI	GWGCWC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	171, 971, 1083
BslFI	GGGAC	3 cut(s)	115, 839, 1099
BslI	CCNNNNNNNGG	4 cut(s)	387, 443, 497, 977
BsmAI	GTCTC	3 cut(s)	104, 386, 968
BsmFI	GGGAC	3 cut(s)	115, 839, 1099
BsnI	GGCC	3 cut(s)	740, 1236, 1338
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	936
Bsp13I	TCCGGA	1 cut(s)	970
Bsp143I	GATC	2 cut(s)	419, 1323
BspACI	CCGC	2 cut(s)	121, 154
BspANI	GGCC	3 cut(s)	740, 1236, 1338
BspCNI	CTCAG	2 cut(s)	701, 1191
BspEI	TCCGGA	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	1235
BspMAI	CTGCAG	3 cut(s)	637, 802, 1351
BspMI	ACCTGC	3 cut(s)	165, 547, 640
BspQI	GCTCTTC	2 cut(s)	615, 957
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	982, 1330
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	419, 1323
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	3 cut(s)	102, 615, 957
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstDEI	CTNAG	2 cut(s)	688, 1199
BstF5I	GGATG	2 cut(s)	322, 1326
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	422, 1326
BstMAI	GTCTC	3 cut(s)	104, 386, 968
BstMBI	GATC	2 cut(s)	419, 1323
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 13, 16, 227, 533, 562, 1193, 1358
BstSCI	CCNGG	1 cut(s)	1082
BstSFI	CTRYAG	4 cut(s)	633, 798, 896, 1347
BstV1I	GCAGC	8 cut(s)	16, 19, 22, 25, 28, 647, 1196, 1361
BstV2I	GAAGAC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	740, 1236, 1338
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	322, 1326
BveI	ACCTGC	3 cut(s)	165, 547, 640
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	794, 1234
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	604, 821
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	688, 1199
DpnI	GATC	2 cut(s)	421, 1325
DpnII	GATC	2 cut(s)	419, 1323
EaeI	YGGCCR	1 cut(s)	1336
Eam1104I	CTCTTC	3 cut(s)	102, 615, 957
EarI	CTCTTC	3 cut(s)	102, 615, 957
Eco147I	AGGCCT	1 cut(s)	740
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	4 cut(s)	126, 426, 711, 1242
Eco88I	CYCGRG	1 cut(s)	436
FaeI	CATG	2 cut(s)	607, 824
FaqI	GGGAC	3 cut(s)	115, 839, 1099
FatI	CATG	2 cut(s)	603, 820
FbaI	TGATCA	1 cut(s)	1323
Fnu4HI	GCNGC	8 cut(s)	5, 8, 11, 14, 17, 636, 1185, 1350
FokI	GGATG	2 cut(s)	329, 1313
Fsp4HI	GCNGC	8 cut(s)	5, 8, 11, 14, 17, 636, 1185, 1350
FspBI	CTAG	5 cut(s)	291, 671, 744, 851, 1289
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	8 cut(s)	5, 8, 11, 14, 17, 636, 1185, 1350
GsuI	CTGGAG	2 cut(s)	993, 1023
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	740, 1236, 1338
HapII	CCGG	3 cut(s)	171, 971, 1083
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	607, 824
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	1208, 1239
HpaII	CCGG	3 cut(s)	171, 971, 1083
HphI	GGTGA	3 cut(s)	77, 461, 1148
Hpy188I	TCNGA	5 cut(s)	424, 510, 715, 730, 1200
HpyAV	CCTTC	6 cut(s)	98, 206, 259, 1117, 1214, 1266
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 13, 16, 227, 533, 562, 1193, 1358
HpyF3I	CTNAG	2 cut(s)	688, 1199
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	607, 824
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	970
Ksp22I	TGATCA	1 cut(s)	1323
Kzo9I	GATC	2 cut(s)	419, 1323
LguI	GCTCTTC	2 cut(s)	615, 957
LmnI	GCTCC	3 cut(s)	598, 643, 749
Lsp1109I	GCAGC	8 cut(s)	16, 19, 22, 25, 28, 647, 1196, 1361
LweI	GCATC	3 cut(s)	664, 855, 1171
MaeI	CTAG	5 cut(s)	291, 671, 744, 851, 1289
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	83, 704, 1246
MalI	GATC	2 cut(s)	421, 1325
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	2 cut(s)	419, 1323
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	936
MluCI	AATT	3 cut(s)	184, 906, 1016
MlyI	GAGTC	5 cut(s)	79, 388, 719, 731, 1081
MmeI	TCCRAC	1 cut(s)	811
MroI	TCCGGA	1 cut(s)	970
MroXI	GAANNNNTTC	3 cut(s)	99, 786, 966
MseI	TTAA	5 cut(s)	272, 993, 1068, 1356, 1366
MslI	CAYNNNNRTG	2 cut(s)	825, 939
MspA1I	CMGCKG	1 cut(s)	1352
MspI	CCGG	3 cut(s)	171, 971, 1083
MspR9I	CCNGG	1 cut(s)	1084
MunI	CAATTG	1 cut(s)	906
MwoI	GCNNNNNNNGC	8 cut(s)	10, 13, 16, 227, 533, 562, 1193, 1358
NciI	CCSGG	1 cut(s)	1084
NdeII	GATC	2 cut(s)	419, 1323
NlaIII	CATG	2 cut(s)	607, 824
NlaIV	GGNNCC	1 cut(s)	1235
NmuCI	GTSAC	2 cut(s)	83, 704
PaqCI	CACCTGC	1 cut(s)	640
PceI	AGGCCT	1 cut(s)	740
PciSI	GCTCTTC	2 cut(s)	615, 957
PdmI	GAANNNNTTC	3 cut(s)	99, 786, 966
PfeI	GAWTC	5 cut(s)	79, 329, 782, 886, 1285
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	8 cut(s)	6, 9, 12, 15, 18, 637, 1186, 1351
PleI	GAGTC	5 cut(s)	78, 388, 718, 730, 1081
PpsI	GAGTC	5 cut(s)	78, 388, 718, 730, 1081
PspN4I	GGNNCC	1 cut(s)	1235
PspPI	GGNCC	2 cut(s)	794, 1234
PstI	CTGCAG	3 cut(s)	637, 802, 1351
PvuII	CAGCTG	1 cut(s)	1352
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	825, 939
SapI	GCTCTTC	2 cut(s)	615, 957
SaqAI	TTAA	5 cut(s)	272, 993, 1068, 1356, 1366
SatI	GCNGC	8 cut(s)	5, 8, 11, 14, 17, 636, 1185, 1350
Sau3AI	GATC	2 cut(s)	419, 1323
Sau96I	GGNCC	2 cut(s)	794, 1234
SchI	GAGTC	5 cut(s)	79, 388, 719, 731, 1081
ScrFI	CCNGG	1 cut(s)	1084
SduI	GDGCHC	1 cut(s)	936
SfaNI	GCATC	3 cut(s)	664, 855, 1171
SfcI	CTRYAG	4 cut(s)	633, 798, 896, 1347
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	2 cut(s)	825, 939
SmlI	CTYRAG	2 cut(s)	396, 473
SmoI	CTYRAG	2 cut(s)	396, 473
Sse9I	AATT	3 cut(s)	184, 906, 1016
SseBI	AGGCCT	1 cut(s)	740
SsiI	CCGC	2 cut(s)	121, 154
SspI	AATATT	3 cut(s)	505, 586, 1050
SspMI	CTAG	5 cut(s)	291, 671, 744, 851, 1289
StuI	AGGCCT	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	1082
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	701
TasI	AATT	3 cut(s)	184, 906, 1016
TfiI	GAWTC	5 cut(s)	79, 329, 782, 886, 1285
Tru1I	TTAA	5 cut(s)	272, 993, 1068, 1356, 1366
Tru9I	TTAA	5 cut(s)	272, 993, 1068, 1356, 1366
TseFI	GTSAC	2 cut(s)	83, 704
TseI	GCWGC	8 cut(s)	4, 7, 10, 13, 16, 635, 1184, 1349
Tsp45I	GTSAC	2 cut(s)	83, 704
TspDTI	ATGAA	3 cut(s)	587, 596, 837
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	794
XbaI	TCTAGA	2 cut(s)	670, 743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmnI	GAANNNNTTC	3 cut(s)	99, 786, 966
XspI	CTAG	5 cut(s)	291, 671, 744, 851, 1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.