Prupe.6G097200_v2.0.a1

RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
6770403 .. 6777057
6655 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G097200.6

Sequence Viewer

Length: 1371 bp
ATGCAGCAGCAACAACAACAACAGCTGGGTTTTGAAGAATCATCAAATATTGGTAGCAATAGGGTGAGTCTATTGATTCGTCACCTTCCAGAAGGCATTCCTGAGGAGACCCTGTTTCGGCTGTTGTCCCACTATGGTGCTTCTTCTGTGCGCTCTTGCTCTGCTACTGGCCGGTTGAGGAACTGCGCATTTGTAGATTTCCAAAATGAAGGCTTGGCTTACCAAGCACAGCGTCAGTTGAACGGGCTGAGGTTTCTTGGTAAGGTCTTAAAAGTGGAGAGGGCGACCGCTAATAATGATAAGCCATCGCAGGCTGCTAACAAGGATTCTCTTTCTATAACCGCCACTTCCAAATCATCTTTGGTCCACAATCCTATCATCAATAGAGATATTCAAGAAACTGAAGTCTCAAGATCAGAGCCCATTGCCCCTAGGCTTGGTGTAGACTATCCCTTTCCTCCTCACCTTGAGTATGCTTACCCGCCACCGGATGGAAATATACTGACCAACATTGTAAATGCTCTTATCGCCGTTCCTCGATTTTATACACAGGTTTTGCACTTGATGAACAAAATGAATATACCAGCTCCATTTCGTATGGCTCTTCCCTCTCCACCGCTACCACCTTCAGTACCCGTGCCACCACCACCTCCCCCTCCTCTAGCTGCAAAGCCTCCCTCAGCAGATTTATCAAGTGAAGAGTCAGAAATGGAGTCTTCAGACGAGGAGATTGATGGAAAACCCTCGAGCGGAACTTCAAGAGGACAGAAGCGTGTCAAACGAGAAGCTATTGTTGGTCCCGCAGTTGATAAAGATGTAGCTCATGAAGATGTTGGATTGAAACCCGCTATTCTGGTCCCTAAAGAGAGGCCAATGATAAAAAAGAAGAACCCTATCGTACAGATAAAAATTGCCCCCAAAGTTGTTAACAATGAACATAAAGATGATAGTATTACCAAAGACTCAGAGCATCCAAAAAATGAGAGTTCAGATATTAATTCTTTTGCAACTCCAGAAGAACTAGAAAGAGGAAAGTTGCCTCCAGAAGAAATATTATCGCTGCCGATGTTTAAGAACTATGCAGCTGGGAATCCTGCCTCTGTGTTGTATATAAAGAACCTGGCAAAGGACATCGTTGCTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCGTTGATGCAGCCAAATCTGGTCTCAGTCTAAAGCTTATGCAGGAAGGAAGAATGAGGGGCCAAGCTTTCGTGACATTTCCATCAGTTGAACTAGCCCATTATGCTTTGAATCTTGTGAATGGGTATGTATTCAAAGGCAAACCAATGATCATCCAGTTTGGCCGGAATCCTGCAGCGGGCAAAGCAAATTAA

Protein Analysis

457

Amino Acids

50.01

Weight (kDa)

8.28

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 491
AccBSI CCGCTC 1 cut(s) 750
AccI GTMKAC 1 cut(s) 444
AciI CCGC 8 cut(s) 288, 342, 482, 617, 750, 801, 846, 1355
AcoI YGGCCR 2 cut(s) 169, 1339
AcuI CTGAAG 3 cut(s) 423, 612, 702
AfaI GTAC 2 cut(s) 633, 900
AfiI CCNNNNNNNGG 7 cut(s) 117, 437, 487, 491, 749, 1126, 1355
AgsI TTSAA 8 cut(s) 35, 241, 395, 759, 841, 1268, 1288, 1312
AjnI CCWGG 1 cut(s) 1119
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 8 cut(s) 25, 587, 665, 788, 821, 1085, 1213, 1244
AluI AGCT 8 cut(s) 25, 587, 665, 788, 821, 1085, 1213, 1244
Alw26I GTCTC 3 cut(s) 101, 412, 1205
Ama87I CYCGRG 1 cut(s) 745
AoxI GGCC 4 cut(s) 169, 869, 1237, 1339
ApeKI GCWGC 8 cut(s) 4, 7, 314, 665, 1060, 1082, 1187, 1352
AseI ATTAAT 1 cut(s) 996
Asp700I GAANNNNTTC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 431
AspLEI GCGC 2 cut(s) 153, 188
AspS9I GGNCC 4 cut(s) 364, 797, 856, 1237
AsuHPI GGTGA 3 cut(s) 74, 76, 455
AvaI CYCGRG 1 cut(s) 745
AvaII GGWCC 3 cut(s) 364, 797, 856
AvrII CCTAGG 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 708
BbvCI CCTCAGC 2 cut(s) 248, 679
BbvI GCAGC 8 cut(s) 16, 19, 301, 652, 1047, 1094, 1199, 1364
BccI CCATC 4 cut(s) 313, 485, 728, 1267
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 1 cut(s) 1121
BclI TGATCA 1 cut(s) 1326
BcoDI GTCTC 3 cut(s) 101, 412, 1205
BfaI CTAG 4 cut(s) 432, 662, 1022, 1271
BfmI CTRYAG 1 cut(s) 1350
BisI GCNGC 8 cut(s) 5, 8, 315, 666, 1061, 1083, 1188, 1353
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 8 cut(s) 6, 9, 316, 667, 1062, 1084, 1189, 1354
Bme1390I CCNGG 1 cut(s) 1121
Bme18I GGWCC 3 cut(s) 364, 797, 856
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 4 cut(s) 364, 797, 856, 1237
BmiI GGNNCC 3 cut(s) 799, 858, 1238
BmrFI CCNGG 1 cut(s) 1121
BmsI GCATC 2 cut(s) 979, 1174
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 996, 1026
Bpu10I CCTNAGC 2 cut(s) 248, 679
BpuEI CTTGAG 2 cut(s) 394, 488
BsaI GGTCTC 2 cut(s) 101, 1205
BsaJI CCNNGG 1 cut(s) 431
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 437, 487, 491, 749, 1126, 1355
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 172, 1333
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 1121
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 3 cut(s) 496, 970, 1329
BseLI CCNNNNNNNGG 7 cut(s) 117, 437, 487, 491, 749, 1126, 1355
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 5 cut(s) 93, 239, 693, 978, 1216
BseNI ACTGG 2 cut(s) 172, 1333
BseRI GAGGAG 4 cut(s) 119, 450, 648, 740
BseXI GCAGC 8 cut(s) 16, 19, 301, 652, 1047, 1094, 1199, 1364
BseYI CCCAGC 2 cut(s) 25, 1085
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 171, 871, 1239, 1341
BsiEI CGRYCG 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 3 cut(s) 172, 488, 1342
BslFI GGGAC 3 cut(s) 112, 783, 842
BslI CCNNNNNNNGG 7 cut(s) 117, 437, 487, 491, 749, 1126, 1355
BsmAI GTCTC 3 cut(s) 101, 412, 1205
BsmFI GGGAC 3 cut(s) 112, 783, 842
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 4 cut(s) 171, 871, 1239, 1341
Bso31I GGTCTC 2 cut(s) 101, 1205
BsoBI CYCGRG 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 413, 1326
BspACI CCGC 8 cut(s) 288, 342, 482, 617, 750, 801, 846, 1355
BspANI GGCC 4 cut(s) 171, 871, 1239, 1341
BspCNI CTCAG 5 cut(s) 94, 240, 692, 977, 1215
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 3 cut(s) 799, 858, 1238
BspMAI CTGCAG 1 cut(s) 1354
BspQI GCTCTTC 1 cut(s) 609
BspTNI GGTCTC 2 cut(s) 101, 1205
BsrBI CCGCTC 1 cut(s) 750
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 171
BsrI ACTGG 2 cut(s) 172, 1333
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 413, 1326
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 1121
Bst6I CTCTTC 2 cut(s) 609, 693
BstC8I GCNNGC 2 cut(s) 312, 1357
BstDEI CTNAG 5 cut(s) 102, 248, 679, 964, 1202
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 3 cut(s) 496, 970, 1329
BstHHI GCGC 2 cut(s) 153, 188
BstKTI GATC 2 cut(s) 416, 1329
BstMAI GTCTC 3 cut(s) 101, 412, 1205
BstMBI GATC 2 cut(s) 413, 1326
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 4 cut(s) 224, 527, 1280, 1361
BstNI CCWGG 1 cut(s) 1121
BstSCI CCNGG 1 cut(s) 1119
BstSFI CTRYAG 1 cut(s) 1350
BstV1I GCAGC 8 cut(s) 16, 19, 301, 652, 1047, 1094, 1199, 1364
BstV2I GAAGAC 1 cut(s) 708
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 171, 871, 1239, 1341
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 496, 970, 1329
Cac8I GCNNGC 2 cut(s) 312, 1357
CciI TCATGA 1 cut(s) 823
CfoI GCGC 2 cut(s) 153, 188
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 4 cut(s) 364, 797, 856, 1237
CseI GACGC 1 cut(s) 221
Csp6I GTAC 2 cut(s) 632, 899
CviAII CATG 1 cut(s) 824
CviQI GTAC 2 cut(s) 632, 899
DdeI CTNAG 5 cut(s) 102, 248, 679, 964, 1202
DpnI GATC 2 cut(s) 415, 1328
DpnII GATC 2 cut(s) 413, 1326
EaeI YGGCCR 2 cut(s) 169, 1339
Eam1104I CTCTTC 2 cut(s) 609, 693
EarI CTCTTC 2 cut(s) 609, 693
Eco130I CCWWGG 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 2 cut(s) 101, 1205
Eco47I GGWCC 3 cut(s) 364, 797, 856
Eco57I CTGAAG 3 cut(s) 423, 612, 702
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 745
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoRII CCWGG 1 cut(s) 1119
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 1 cut(s) 827
FaqI GGGAC 3 cut(s) 112, 783, 842
FatI CATG 1 cut(s) 823
FauI CCCGC 4 cut(s) 489, 808, 853, 1348
FbaI TGATCA 1 cut(s) 1326
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 8 cut(s) 5, 8, 315, 666, 1061, 1083, 1188, 1353
FokI GGATG 3 cut(s) 503, 957, 1316
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 8 cut(s) 5, 8, 315, 666, 1061, 1083, 1188, 1353
FspBI CTAG 4 cut(s) 432, 662, 1022, 1271
FspI TGCGCA 1 cut(s) 187
GlaI GCGC 2 cut(s) 152, 187
GluI GCNGC 8 cut(s) 5, 8, 315, 666, 1061, 1083, 1188, 1353
GsaI CCCAGC 2 cut(s) 29, 1089
GsuI CTGGAG 2 cut(s) 996, 1026
HaeIII GGCC 4 cut(s) 171, 871, 1239, 1341
HapII CCGG 3 cut(s) 172, 488, 1342
HgaI GACGC 1 cut(s) 221
HhaI GCGC 2 cut(s) 153, 188
Hin1II CATG 1 cut(s) 827
Hin6I GCGC 2 cut(s) 151, 186
HinP1I GCGC 2 cut(s) 151, 186
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HindIII AAGCTT 2 cut(s) 1211, 1242
HpaI GTTAAC 1 cut(s) 928
HpaII CCGG 3 cut(s) 172, 488, 1342
HphI GGTGA 3 cut(s) 74, 76, 455
Hpy166II GTNNAC 3 cut(s) 367, 445, 928
Hpy188I TCNGA 5 cut(s) 418, 706, 721, 967, 991
Hpy188III TCNNGA 9 cut(s) 89, 101, 395, 411, 759, 824, 1013, 1043, 1249
Hpy8I GTNNAC 3 cut(s) 367, 445, 928
HpyAV CCTTC 5 cut(s) 86, 95, 203, 636, 1217
HpyCH4V TGCA 8 cut(s) 4, 559, 668, 1007, 1082, 1187, 1219, 1352
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 527, 1280, 1361
HpyF3I CTNAG 5 cut(s) 102, 248, 679, 964, 1202
Hsp92II CATG 1 cut(s) 827
HspAI GCGC 2 cut(s) 151, 186
Ksp22I TGATCA 1 cut(s) 1326
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 2 cut(s) 413, 1326
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 8 cut(s) 16, 19, 301, 652, 1047, 1094, 1199, 1364
LweI GCATC 2 cut(s) 979, 1174
MaeI CTAG 4 cut(s) 432, 662, 1022, 1271
MaeIII GTNAC 2 cut(s) 80, 1249
MalI GATC 2 cut(s) 415, 1328
MbiI CCGCTC 1 cut(s) 750
MboI GATC 2 cut(s) 413, 1326
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 3 cut(s) 909, 997, 1366
MlyI GAGTC 4 cut(s) 76, 710, 722, 956
MmeI TCCRAC 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 5 cut(s) 269, 927, 996, 1071, 1369
MslI CAYNNNNRTG 3 cut(s) 135, 828, 942
MspA1I CMGCKG 3 cut(s) 25, 1085, 1355
MspI CCGG 3 cut(s) 172, 488, 1342
MspR9I CCNGG 1 cut(s) 1121
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 1121
MwoI GCNNNNNNNGC 4 cut(s) 224, 527, 1280, 1361
NdeII GATC 2 cut(s) 413, 1326
NlaIII CATG 1 cut(s) 827
NlaIV GGNNCC 3 cut(s) 799, 858, 1238
NmuCI GTSAC 2 cut(s) 80, 1249
NsbI TGCGCA 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 135
PaeR7I CTCGAG 1 cut(s) 745
PagI TCATGA 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 609
PctI GAATGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 6 cut(s) 38, 76, 326, 1090, 1288, 1345
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 8 cut(s) 6, 9, 316, 667, 1062, 1084, 1189, 1354
PleI GAGTC 4 cut(s) 75, 709, 721, 956
PpsI GAGTC 4 cut(s) 75, 709, 721, 956
PshBI ATTAAT 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 1119
PspFI CCCAGC 2 cut(s) 25, 1085
PspGI CCWGG 1 cut(s) 1119
PspN4I GGNNCC 3 cut(s) 799, 858, 1238
PspPI GGNCC 4 cut(s) 364, 797, 856, 1237
PspXI VCTCGAGB 1 cut(s) 745
PstI CTGCAG 1 cut(s) 1354
PvuII CAGCTG 2 cut(s) 25, 1085
RsaI GTAC 2 cut(s) 633, 900
RsaNI GTAC 2 cut(s) 632, 899
RseI CAYNNNNRTG 3 cut(s) 135, 828, 942
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 5 cut(s) 269, 927, 996, 1071, 1369
SatI GCNGC 8 cut(s) 5, 8, 315, 666, 1061, 1083, 1188, 1353
Sau3AI GATC 2 cut(s) 413, 1326
Sau96I GGNCC 4 cut(s) 364, 797, 856, 1237
SchI GAGTC 4 cut(s) 76, 710, 722, 956
ScrFI CCNGG 1 cut(s) 1121
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 2 cut(s) 979, 1174
SfcI CTRYAG 1 cut(s) 1350
Sfr274I CTCGAG 1 cut(s) 745
SinI GGWCC 3 cut(s) 364, 797, 856
SlaI CTCGAG 1 cut(s) 745
SmiMI CAYNNNNRTG 3 cut(s) 135, 828, 942
SmlI CTYRAG 3 cut(s) 409, 467, 745
SmoI CTYRAG 3 cut(s) 409, 467, 745
Sse9I AATT 3 cut(s) 909, 997, 1366
SsiI CCGC 8 cut(s) 288, 342, 482, 617, 750, 801, 846, 1355
SspI AATATT 2 cut(s) 49, 1053
SspMI CTAG 4 cut(s) 432, 662, 1022, 1271
StyD4I CCNGG 1 cut(s) 1119
StyI CCWWGG 1 cut(s) 431
TaqI TCGA 2 cut(s) 538, 746
TasI AATT 3 cut(s) 909, 997, 1366
TfiI GAWTC 6 cut(s) 38, 76, 326, 1090, 1288, 1345
Tru1I TTAA 5 cut(s) 269, 927, 996, 1071, 1369
Tru9I TTAA 5 cut(s) 269, 927, 996, 1071, 1369
TseFI GTSAC 2 cut(s) 80, 1249
TseI GCWGC 8 cut(s) 4, 7, 314, 665, 1060, 1082, 1187, 1352
Tsp45I GTSAC 2 cut(s) 80, 1249
TspDTI ATGAA 5 cut(s) 222, 581, 590, 840, 948
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 3 cut(s) 364, 797, 856
VspI ATTAAT 1 cut(s) 996
XagI CCTNNNNNAGG 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XhoI CTCGAG 1 cut(s) 745
XmaJI CCTAGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 4 cut(s) 432, 662, 1022, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.