Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004353

Physical Location & Seq

Genomic Coordinates Reverse (-)

28326123 .. 28332112

Gene Structure 5990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGCATTAAAGAAGCATCAAGCAGCAGTACAGCGAGTCTCTTGATTCGTCACCTCCCAGAAGCCATACCTGAAGAGACCCTCTTCCGCTTATTCTCCCACTACGGCGCTTCTTCCGTCCGCTCTTGCTCTCCCACCGCCCGGCTCAGAAACTGCGCCTTTGTCGATTTCCAGAACCAAGGCCTGGCTTACCAAGCACTTCGCCAGCTGAATGGGCTGAGGTTTCTTGGGAAGGTGTTGAAAGTGGAGAGGGCTACTAGCAATAGTGACAAGACATTGCCCGATGGCAACAAGGATCCGCTGTCTGTGCCACCCGCTTCCACATTGTCTTCCTTGAAAAAAGAGAGTGGAGAAGCTGACGCTGCGAGAGCGGAGCCTATAGCCCCGAGGCTTGGGGTGGATTACTGCTTTCCTCCTCACCTTGAATATGCTTACCCACCACCAGATGGGAATATCCTGACCAACATTGTAAATGCTCTTATTGCTGTTCCTCGCTTTTATACTCAGGTTTTGCACTTGATGAACAAAATGAATATTCCAGCTCCATTTCGCATGGCTCTTCCCTCTCCACCTCTACCACCTGCAGCTCCTGTGCCCCCACCTGCCCCTCCTCTTGCTGAAAAGCCTCCATTAGCAGATATATCAAGTGACGAGTCCGAAATGGAGTCTTCAGATGAGGAGGCGTCTAGAGGAGCTTTAAGAGGAAAGAAGCGTGTCAGGCGGGAATCTATTCTTGGTCCTGCAGTTGATAAAGGTGTAGCACATGAAGATGTTGGATTGAAACAAGCTATTCTAGTCCCAAAAGAGATGCCGATGATAAAGAAGAAGAATCCTCTGCTACATATAGCAATTACCCAGAAAGTTGTTCACAATGAGCATAAAGATGATAGCACCACCAAAGAAGAAAAGCTTCCAGAAACTGAGAGTTCAGTCATCAACCCTTTTGCAACTCCTGAAGAACTAGAAAGAGGGAAGTTGCCTCCAGAAGAAATATTATCGCTTCCAATGTTTAAGAACTATACCACTGGGACTGCTGCCCCTGTGTTGTATATAAAGAACTTGGCAAAGGACATTGTTGTTGATGACTTCTACTACATATTTGGGTCATTATTTGGAAGCGCTGATGCAGCCAAATCTGGTCTCAGTGTGAAGCTAATGCAGGAAGGGAGAATGAGGGGCCAAGCTTTCGTGACATTTCCTTCAGTTGAGCAAAGCCAATATGCTTTGAATCTAGTAAATGGGTATGTGTTCAGAGGAAAACCAATGATCATCCAGTTTGGCCGTAATCCAGCAGCTGCTAAAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009987 GO:0010229 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0022414 GO:0030626 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0097157 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

437

Amino Acids

47.59

Weight (kDa)

8.52

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	14 - 81	1.9e-11	RNA recognition motif
RRM_1	PF00076	349 - 421	1e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09230 AT1G09230 AT1G09230
fragaria_vesca	FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950 FvH4_3g32950
malus_domestica	MD03G1112900.v1.1
prunus_persica	Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1 Prupe.6G097200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060221
rosa_laevigata	RLG00000035347
rosa_roxburghii	Rroxscaffold_1G00020500
rosa_rugosa	Rorug05G0328400
rosa_samantha	Rh5AG392600 Rh5BG405100 Rh5CG429200 Rh5DG420700
rosa_wichuraiana	Rw5G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	589, 610
Acc36I	ACCTGC	2 cut(s)	589, 610
AccB7I	CCANNNNNTGG	2 cut(s)	184, 446
AccBSI	CCGCTC	2 cut(s)	123, 371
AciI	CCGC	7 cut(s)	88, 121, 138, 299, 315, 371, 721
AclWI	GGATC	2 cut(s)	290, 303
AcoI	YGGCCR	1 cut(s)	1279
AcuI	CTGAAG	4 cut(s)	93, 654, 975, 1185
AcyI	GRCGYC	1 cut(s)	683
AfaI	GTAC	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	1120
AfiI	CCNNNNNNNGG	4 cut(s)	141, 184, 392, 446
AgsI	TTSAA	5 cut(s)	241, 337, 425, 781, 1228
AjnI	CCWGG	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw26I	GTCTC	3 cut(s)	44, 71, 1145
AlwI	GGATC	2 cut(s)	290, 303
AlwNI	CAGNNNCTG	4 cut(s)	153, 590, 920, 1295
Ama87I	CYCGRG	1 cut(s)	385
Aor51HI	AGCGCT	1 cut(s)	1120
AoxI	GGCC	3 cut(s)	181, 1177, 1279
ApeKI	GCWGC	7 cut(s)	24, 362, 584, 1034, 1127, 1292, 1295
Asp700I	GAANNNNTTC	2 cut(s)	729, 909
AspLEI	GCGC	3 cut(s)	110, 158, 1121
AspS9I	GGNCC	2 cut(s)	737, 1177
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	44, 410
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	321, 660
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	7 cut(s)	36, 349, 596, 1021, 1139, 1282, 1304
BccI	CCATC	2 cut(s)	278, 440
BceAI	ACGGC	2 cut(s)	121, 1266
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	1266
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	3 cut(s)	44, 71, 1145
BfaI	CTAG	5 cut(s)	258, 687, 794, 962, 1232
BfmI	CTRYAG	3 cut(s)	378, 582, 741
BfoI	RGCGCY	2 cut(s)	111, 1122
BfuAI	ACCTGC	2 cut(s)	589, 610
BisI	GCNGC	7 cut(s)	25, 363, 585, 1035, 1128, 1293, 1296
BlsI	GCNGC	7 cut(s)	26, 364, 586, 1036, 1129, 1294, 1297
Bme1390I	CCNGG	2 cut(s)	142, 185
Bme18I	GGWCC	1 cut(s)	737
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	737, 1177
BmiI	GGNNCC	3 cut(s)	297, 375, 1178
BmrFI	CCNGG	2 cut(s)	142, 185
BmrI	ACTGGG	1 cut(s)	1035
BmsI	GCATC	3 cut(s)	26, 798, 1114
BmuI	ACTGGG	1 cut(s)	1035
BpiI	GAAGAC	2 cut(s)	321, 660
BpmI	CTGGAG	1 cut(s)	966
Bpu10I	CCTNAGC	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	683
BsaI	GGTCTC	2 cut(s)	71, 1145
BsaJI	CCNNGG	2 cut(s)	178, 386
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 184, 392, 446
Bse1I	ACTGG	2 cut(s)	1030, 1273
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	178, 386
BseGI	GGATG	1 cut(s)	1269
BseLI	CCNNNNNNNGG	4 cut(s)	141, 184, 392, 446
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	5 cut(s)	160, 209, 518, 912, 1156
BseNI	ACTGG	2 cut(s)	1030, 1273
BseRI	GAGGAG	4 cut(s)	405, 600, 692, 705
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	7 cut(s)	36, 349, 596, 1021, 1139, 1282, 1304
BshFI	GGCC	3 cut(s)	183, 1179, 1281
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	782, 1042
BslI	CCNNNNNNNGG	4 cut(s)	141, 184, 392, 446
BsmAI	GTCTC	3 cut(s)	44, 71, 1145
BsmFI	GGGAC	2 cut(s)	782, 1042
BsnI	GGCC	3 cut(s)	183, 1179, 1281
Bso31I	GGTCTC	2 cut(s)	71, 1145
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	295, 1266
BspACI	CCGC	7 cut(s)	88, 121, 138, 299, 315, 371, 721
BspANI	GGCC	3 cut(s)	183, 1179, 1281
BspCNI	CTCAG	5 cut(s)	159, 210, 517, 913, 1155
BspLI	GGNNCC	3 cut(s)	297, 375, 1178
BspMAI	CTGCAG	2 cut(s)	586, 745
BspMI	ACCTGC	2 cut(s)	589, 610
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	1 cut(s)	564
BspTNI	GGTCTC	2 cut(s)	71, 1145
BsrBI	CCGCTC	2 cut(s)	123, 371
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	1030, 1273
BssECI	CCNNGG	2 cut(s)	178, 386
BssMI	GATC	2 cut(s)	295, 1266
BssNI	GRCGYC	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	3 cut(s)	69, 89, 564
BstACI	GRCGYC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	5 cut(s)	146, 218, 504, 921, 1142
BstF5I	GGATG	1 cut(s)	1269
BstH2I	RGCGCY	2 cut(s)	111, 1122
BstHHI	GCGC	3 cut(s)	110, 158, 1121
BstKTI	GATC	2 cut(s)	298, 1269
BstMAI	GTCTC	3 cut(s)	44, 71, 1145
BstMBI	GATC	2 cut(s)	295, 1266
BstMWI	GCNNNNNNNGC	9 cut(s)	194, 214, 307, 362, 368, 482, 718, 1127, 1301
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	140, 183
BstSFI	CTRYAG	3 cut(s)	378, 582, 741
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	7 cut(s)	36, 349, 596, 1021, 1139, 1282, 1304
BstV2I	GAAGAC	2 cut(s)	321, 660
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	183, 1179, 1281
BtsCI	GGATG	1 cut(s)	1269
BtsIMutI	CAGTG	2 cut(s)	1023, 1150
BveI	ACCTGC	2 cut(s)	589, 610
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	4 cut(s)	153, 590, 920, 1295
CfoI	GCGC	3 cut(s)	110, 158, 1121
Cfr13I	GGNCC	2 cut(s)	737, 1177
CseI	GACGC	2 cut(s)	368, 672
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	553, 764
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	5 cut(s)	146, 218, 504, 921, 1142
DpnI	GATC	2 cut(s)	297, 1268
DpnII	GATC	2 cut(s)	295, 1266
EaeI	YGGCCR	1 cut(s)	1279
Eam1104I	CTCTTC	3 cut(s)	69, 89, 564
EarI	CTCTTC	3 cut(s)	69, 89, 564
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	1 cut(s)	183
Eco31I	GGTCTC	2 cut(s)	71, 1145
Eco47I	GGWCC	1 cut(s)	737
Eco47III	AGCGCT	1 cut(s)	1120
Eco57I	CTGAAG	4 cut(s)	93, 654, 975, 1185
Eco88I	CYCGRG	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	556, 767
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	2 cut(s)	782, 1042
FatI	CATG	2 cut(s)	552, 763
FauI	CCCGC	2 cut(s)	322, 714
FbaI	TGATCA	1 cut(s)	1266
Fnu4HI	GCNGC	7 cut(s)	25, 363, 585, 1035, 1128, 1293, 1296
FokI	GGATG	1 cut(s)	1256
Fsp4HI	GCNGC	7 cut(s)	25, 363, 585, 1035, 1128, 1293, 1296
FspBI	CTAG	5 cut(s)	258, 687, 794, 962, 1232
GlaI	GCGC	3 cut(s)	109, 157, 1120
GluI	GCNGC	7 cut(s)	25, 363, 585, 1035, 1128, 1293, 1296
GsuI	CTGGAG	1 cut(s)	966
HaeII	RGCGCY	2 cut(s)	111, 1122
HaeIII	GGCC	3 cut(s)	183, 1179, 1281
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	2 cut(s)	368, 672
HhaI	GCGC	3 cut(s)	110, 158, 1121
Hin1I	GRCGYC	1 cut(s)	683
Hin1II	CATG	2 cut(s)	556, 767
Hin6I	GCGC	3 cut(s)	108, 156, 1119
HinP1I	GCGC	3 cut(s)	108, 156, 1119
HindIII	AAGCTT	2 cut(s)	908, 1182
HinfI	GANTC	7 cut(s)	37, 46, 653, 665, 725, 829, 1228
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	2 cut(s)	44, 410
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	4 cut(s)	149, 658, 673, 1253
Hpy188III	TCNNGA	8 cut(s)	43, 172, 457, 687, 914, 953, 983, 1189
Hpy8I	GTNNAC	1 cut(s)	868
HpyAV	CCTTC	3 cut(s)	226, 1157, 1209
HpyCH4V	TGCA	6 cut(s)	514, 584, 743, 947, 1127, 1159
HpyF10VI	GCNNNNNNNGC	9 cut(s)	194, 214, 307, 362, 368, 482, 718, 1127, 1301
HpyF3I	CTNAG	5 cut(s)	146, 218, 504, 921, 1142
Hsp92I	GRCGYC	1 cut(s)	683
Hsp92II	CATG	2 cut(s)	556, 767
HspAI	GCGC	3 cut(s)	108, 156, 1119
Ksp22I	TGATCA	1 cut(s)	1266
Kzo9I	GATC	2 cut(s)	295, 1266
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	4 cut(s)	373, 547, 592, 692
Lsp1109I	GCAGC	7 cut(s)	36, 349, 596, 1021, 1139, 1282, 1304
LweI	GCATC	3 cut(s)	26, 798, 1114
MaeI	CTAG	5 cut(s)	258, 687, 794, 962, 1232
MaeIII	GTNAC	4 cut(s)	50, 266, 647, 1189
MalI	GATC	2 cut(s)	297, 1268
MbiI	CCGCTC	2 cut(s)	123, 371
MboI	GATC	2 cut(s)	295, 1266
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	1 cut(s)	849
MlyI	GAGTC	3 cut(s)	46, 662, 674
MmeI	TCCRAC	1 cut(s)	754
MroXI	GAANNNNTTC	2 cut(s)	729, 909
MseI	TTAA	4 cut(s)	9, 698, 1011, 1309
MslI	CAYNNNNRTG	2 cut(s)	768, 882
MspA1I	CMGCKG	3 cut(s)	208, 301, 1295
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	2 cut(s)	142, 185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	9 cut(s)	194, 214, 307, 362, 368, 482, 718, 1127, 1301
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	295, 1266
NlaIII	CATG	2 cut(s)	556, 767
NlaIV	GGNNCC	3 cut(s)	297, 375, 1178
NmuCI	GTSAC	4 cut(s)	50, 266, 647, 1189
PaqCI	CACCTGC	2 cut(s)	589, 610
PceI	AGGCCT	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	564
PdmI	GAANNNNTTC	2 cut(s)	729, 909
PfeI	GAWTC	4 cut(s)	46, 725, 829, 1228
PflMI	CCANNNNNTGG	2 cut(s)	184, 446
PkrI	GCNGC	7 cut(s)	26, 364, 586, 1036, 1129, 1294, 1297
PleI	GAGTC	3 cut(s)	45, 661, 673
PpsI	GAGTC	3 cut(s)	45, 661, 673
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	297, 375, 1178
PspPI	GGNCC	2 cut(s)	737, 1177
PstI	CTGCAG	2 cut(s)	586, 745
PstNI	CAGNNNCTG	4 cut(s)	153, 590, 920, 1295
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	2 cut(s)	208, 1295
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	768, 882
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	4 cut(s)	9, 698, 1011, 1309
SatI	GCNGC	7 cut(s)	25, 363, 585, 1035, 1128, 1293, 1296
Sau3AI	GATC	2 cut(s)	295, 1266
Sau96I	GGNCC	2 cut(s)	737, 1177
SchI	GAGTC	3 cut(s)	46, 662, 674
ScrFI	CCNGG	2 cut(s)	142, 185
SduI	GDGCHC	1 cut(s)	597
SfaNI	GCATC	3 cut(s)	26, 798, 1114
SfcI	CTRYAG	3 cut(s)	378, 582, 741
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	768, 882
Sse9I	AATT	1 cut(s)	849
SseBI	AGGCCT	1 cut(s)	183
SsiI	CCGC	7 cut(s)	88, 121, 138, 299, 315, 371, 721
SspI	AATATT	2 cut(s)	535, 993
SspMI	CTAG	5 cut(s)	258, 687, 794, 962, 1232
StuI	AGGCCT	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	140, 183
StyI	CCWWGG	1 cut(s)	178
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	849
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	4 cut(s)	46, 725, 829, 1228
Tru1I	TTAA	4 cut(s)	9, 698, 1011, 1309
Tru9I	TTAA	4 cut(s)	9, 698, 1011, 1309
TscAI	CASTG	2 cut(s)	1030, 1150
TseFI	GTSAC	4 cut(s)	50, 266, 647, 1189
TseI	GCWGC	7 cut(s)	24, 362, 584, 1034, 1127, 1292, 1295
Tsp45I	GTSAC	4 cut(s)	50, 266, 647, 1189
TspDTI	ATGAA	3 cut(s)	536, 545, 780
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	1030, 1150
Van91I	CCANNNNNTGG	2 cut(s)	184, 446
VpaK11BI	GGWCC	1 cut(s)	737
XbaI	TCTAGA	1 cut(s)	686
XmnI	GAANNNNTTC	2 cut(s)	729, 909
XspI	CTAG	5 cut(s)	258, 687, 794, 962, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.