AT1G09520

protein binding, zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017503
Physical Location & Seq
Reverse (-)
3070915 .. 3072074
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09520.1

Sequence Viewer

Length: 783 bp
ATGAATCTTCCATCGTCAACGACGGCGACGTCAACCTCCGCGACTTCCGATGCAGCGGCGAATTCCACCGAAAGATGCGATGATTGCGGAAGCTCAGACGCCTGGGTGATACACACAGTACGTCTCCGTGCATCTCTCCGCTTCTTCTGCACTCATTGTCTCCTCCGCAACCATCCGGCGTCGTTTTGTCCCGGTTGCTTCGCCTTGTACGATTCATCTCCGCCGTCTTTTCGCCGCGTCTCTTGTTCCATTAAAGGGTGCCACTCCTTGACTCACATTCACTGTGCCGGCGATGAAAGTCACCTTTCTTATCTCTGTCCTCCTTGCCGAGACCCTAATTCCTTCTCCTTCTTCCGCCCTATCGTCGACGAAAACGGCTCTCGCTTCGTCGATAAAGCACTCTCCGAAGCTTTCTTATGCGCTGCTAAGATCGCTGCTTCTTCAATGAACAAAGCTGTTATGACCGCTAAGTGTGAAACTGACCGGAGAGGAAAAGAAGCTGCTTTGGCGAAGAAGAGAGCTCGCGAGGCTCTTGAGCAGGTTGTCATGCTTGATGCCAAGGAGAAGGCAAGATCGGTTGTTCCTAAGCTTAAAGAAGCTCCCGTTGATCAGAAACCAAAACTGAGTCCTGCATCAAATGGTGCTACTGTGAAAGAAACAGAGAGCTCTGATACTACTACTACTCCTACGACGACTACGACTAAGAACAATGGAGGTACAGAGAAACAGAATCCGGCAACACAATTGGCTAAAGTTAAGCAAGAAGCTGATGCGTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.02

Weight (kDa)

8.77

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 258
AccI GTMKAC 1 cut(s) 366
AccII CGCG 3 cut(s) 41, 237, 525
AciI CCGC 9 cut(s) 39, 56, 87, 139, 166, 221, 235, 355, 465
AcsI RAATTY 1 cut(s) 61
AcyI GRCGYC 3 cut(s) 29, 99, 179
AfaI GTAC 3 cut(s) 120, 209, 718
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 1 cut(s) 444
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 9 cut(s) 93, 410, 455, 500, 521, 589, 599, 666, 767
AluI AGCT 9 cut(s) 93, 410, 455, 500, 521, 589, 599, 666, 767
Alw21I GWGCWC 2 cut(s) 523, 668
Alw26I GTCTC 4 cut(s) 128, 164, 244, 324
ApeKI GCWGC 4 cut(s) 53, 422, 434, 500
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 118, 293
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 523, 668
Bbv12I GWGCWC 2 cut(s) 523, 668
BbvI GCAGC 4 cut(s) 65, 409, 421, 487
BccI CCATC 2 cut(s) 19, 180
BceAI ACGGC 3 cut(s) 39, 208, 391
BciT130I CCWGG 1 cut(s) 103
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 4 cut(s) 128, 164, 244, 324
BfaI CTAG 1 cut(s) 777
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 6 cut(s) 54, 57, 235, 423, 435, 501
BlsI GCNGC 6 cut(s) 55, 58, 236, 424, 436, 502
Bme1390I CCNGG 2 cut(s) 103, 192
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 103, 192
BmsI GCATC 6 cut(s) 40, 65, 140, 544, 641, 760
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 192
BsaHI GRCGYC 3 cut(s) 29, 99, 179
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 102, 558
BsaWI WCCGGW 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse118I RCCGGY 1 cut(s) 287
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 102, 558
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 108, 614
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 4 cut(s) 65, 409, 421, 487
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 3 cut(s) 41, 237, 525
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 523, 668
BsiSI CCGG 5 cut(s) 176, 192, 288, 484, 734
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 4 cut(s) 128, 164, 244, 324
BsmBI CGTCTC 2 cut(s) 128, 244
BsmFI GGGAC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 523, 668
Bsp143I GATC 3 cut(s) 429, 572, 607
Bsp68I TCGCGA 1 cut(s) 525
BspACI CCGC 9 cut(s) 39, 56, 87, 139, 166, 221, 235, 355, 465
BspCNI CTCAG 2 cut(s) 107, 615
BspFNI CGCG 3 cut(s) 41, 237, 525
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 102, 558
BssMI GATC 3 cut(s) 429, 572, 607
BssNI GRCGYC 3 cut(s) 29, 99, 179
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 118, 284, 649
Bst6I CTCTTC 1 cut(s) 509
BstACI GRCGYC 3 cut(s) 29, 99, 179
BstC8I GCNNGC 2 cut(s) 289, 523
BstDEI CTNAG 6 cut(s) 94, 426, 468, 585, 623, 702
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 3 cut(s) 41, 237, 525
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 432, 575, 610
BstMAI GTCTC 4 cut(s) 128, 164, 244, 324
BstMBI GATC 3 cut(s) 429, 572, 607
BstMWI GCNNNNNNNGC 5 cut(s) 84, 147, 431, 506, 527
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 101, 190
BstUI CGCG 3 cut(s) 41, 237, 525
BstV1I GCAGC 4 cut(s) 65, 409, 421, 487
BtgZI GCGATG 2 cut(s) 93, 306
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 280
BtuMI TCGCGA 1 cut(s) 525
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 289, 523
CfoI GCGC 1 cut(s) 422
Cfr10I RCCGGY 1 cut(s) 287
CseI GACGC 4 cut(s) 107, 168, 226, 762
Csp6I GTAC 3 cut(s) 119, 208, 717
CviAII CATG 1 cut(s) 547
CviQI GTAC 3 cut(s) 119, 208, 717
DdeI CTNAG 6 cut(s) 94, 426, 468, 585, 623, 702
DpnI GATC 3 cut(s) 431, 574, 609
DpnII GATC 3 cut(s) 429, 572, 607
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 2 cut(s) 210, 344
Ecl136II GAGCTC 2 cut(s) 521, 666
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 523, 668
Eco31I GGTCTC 1 cut(s) 324
Eco53kI GAGCTC 2 cut(s) 521, 666
EcoICRI GAGCTC 2 cut(s) 521, 666
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 2 cut(s) 523, 668
ErhI CCWWGG 1 cut(s) 558
Esp3I CGTCTC 2 cut(s) 128, 244
FaeI CATG 1 cut(s) 550
FaiI YATR 3 cut(s) 418, 461, 548
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 546
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 6 cut(s) 54, 57, 235, 423, 435, 501
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 2 cut(s) 523, 668
Fsp4HI GCNGC 6 cut(s) 54, 57, 235, 423, 435, 501
FspBI CTAG 1 cut(s) 777
GlaI GCGC 1 cut(s) 421
GluI GCNGC 6 cut(s) 54, 57, 235, 423, 435, 501
HapII CCGG 5 cut(s) 176, 192, 288, 484, 734
HgaI GACGC 4 cut(s) 107, 168, 226, 762
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 3 cut(s) 29, 99, 179
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 3 cut(s) 18, 33, 367
HindII GTYRAC 3 cut(s) 18, 33, 367
HindIII AAGCTT 2 cut(s) 408, 587
HinfI GANTC 5 cut(s) 4, 212, 271, 625, 730
HpaII CCGG 5 cut(s) 176, 192, 288, 484, 734
HphI GGTGA 2 cut(s) 118, 293
Hpy166II GTNNAC 3 cut(s) 18, 33, 367
Hpy188I TCNGA 5 cut(s) 49, 97, 406, 612, 670
Hpy188III TCNNGA 2 cut(s) 524, 533
Hpy8I GTNNAC 3 cut(s) 18, 33, 367
Hpy99I CGWCG 7 cut(s) 25, 31, 184, 368, 371, 392, 694
HpyAV CCTTC 3 cut(s) 352, 358, 559
HpyCH4III ACNGT 3 cut(s) 118, 284, 649
HpyCH4IV ACGT 2 cut(s) 29, 121
HpyCH4V TGCA 4 cut(s) 53, 131, 150, 632
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 147, 431, 506, 527
HpyF3I CTNAG 6 cut(s) 94, 426, 468, 585, 623, 702
HpySE526I ACGT 2 cut(s) 29, 121
Hsp92I GRCGYC 3 cut(s) 29, 99, 179
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 420
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 3 cut(s) 429, 572, 607
LmnI GCTCC 1 cut(s) 604
LpnPI CCDG 9 cut(s) 88, 115, 189, 205, 301, 497, 524, 642, 747
Lsp1109I GCAGC 4 cut(s) 65, 409, 421, 487
LweI GCATC 6 cut(s) 40, 65, 140, 544, 641, 760
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 29, 121
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 431, 574, 609
MboI GATC 3 cut(s) 429, 572, 607
MboII GAAGA 5 cut(s) 136, 343, 432, 523, 526
MfeI CAATTG 1 cut(s) 743
MhlI GDGCHC 2 cut(s) 523, 668
MluCI AATT 3 cut(s) 61, 337, 743
MlyI GAGTC 2 cut(s) 265, 634
MnlI CCTC 6 cut(s) 46, 173, 330, 482, 520, 707
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 3 cut(s) 252, 591, 756
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 5 cut(s) 176, 192, 288, 484, 734
MspR9I CCNGG 2 cut(s) 103, 192
MunI CAATTG 1 cut(s) 743
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 3 cut(s) 41, 237, 525
MwoI GCNNNNNNNGC 5 cut(s) 84, 147, 431, 506, 527
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 192
NdeII GATC 3 cut(s) 429, 572, 607
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 299
NruI TCGCGA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 3 cut(s) 26, 207, 695
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 4, 212, 730
PkrI GCNGC 6 cut(s) 55, 58, 236, 424, 436, 502
PleI GAGTC 2 cut(s) 265, 633
PpsI GAGTC 2 cut(s) 265, 633
Psp124BI GAGCTC 2 cut(s) 523, 668
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 260
RruI TCGCGA 1 cut(s) 525
RsaI GTAC 3 cut(s) 120, 209, 718
RsaNI GTAC 3 cut(s) 119, 208, 717
SacI GAGCTC 2 cut(s) 523, 668
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 3 cut(s) 252, 591, 756
SatI GCNGC 6 cut(s) 54, 57, 235, 423, 435, 501
Sau3AI GATC 3 cut(s) 429, 572, 607
SchI GAGTC 2 cut(s) 265, 634
ScrFI CCNGG 2 cut(s) 103, 192
SduI GDGCHC 2 cut(s) 523, 668
SfaNI GCATC 6 cut(s) 40, 65, 140, 544, 641, 760
SgrDI CGTCGACG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 3 cut(s) 61, 337, 743
SsiI CCGC 9 cut(s) 39, 56, 87, 139, 166, 221, 235, 355, 465
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 2 cut(s) 523, 668
StyD4I CCNGG 2 cut(s) 101, 190
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 3 cut(s) 118, 284, 649
TaiI ACGT 2 cut(s) 32, 124
TaqI TCGA 2 cut(s) 366, 390
TasI AATT 3 cut(s) 61, 337, 743
TauI GCSGC 2 cut(s) 59, 237
TfiI GAWTC 3 cut(s) 4, 212, 730
Tru1I TTAA 3 cut(s) 252, 591, 756
Tru9I TTAA 3 cut(s) 252, 591, 756
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 4 cut(s) 53, 422, 434, 500
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 4 cut(s) 17, 204, 309, 461
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 287
XapI RAATTY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 1 cut(s) 777
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.