RchiOBHm_Chr3g0458411

dna binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017503
Physical Location & Seq
Reverse (-)
7124238 .. 7125913
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42508

Sequence Viewer

Length: 864 bp
ATGAAGAACCCTAATCCCGACGACACGGCTCCCAATCCAAAACCGAACAACCACCATAGCGCCGACAATGGGCGGCTGAGAGTAGAGGCACCGGGACCAGCCTCGGCCGCAGGAGGAGGAGCAGCCGGCGGCGGAGTGGTAGAGGAGTGCAGCAACTGCGGGACCAAGAAGGGGTGGGTCCTACACAATGTCCGTTACCGAGCCACCCTCCGCCGCCTCTGCACCTCCTGCGTCCTCCGCCTCCACCCGGCCAGCTTCTGCCCCATCTGCTTCCTGTTCCAGGACCACAGCAATTCCCAAAATGCCCCTCCCCCCAACCTCGTCTCCTGCTCCAAGTGCCCCTCCCTCTCCCACTCCGACTGCCTCCCTCCCTACGCCGCCTTCTCCCCCTCCCCGTTCCTCTGCCCGCCCTGCGCCTCCGCCAACCCCAAATTCTCCTTCTTCGAGCTCGACGACCGCAACAAGGTCCTCGACAAGCGCCTCGCCGCCGTGCTTCTCTGCGCCGCCAGCATCGCCGCCTCGTCCATGTCCAAAGCCGCTGCCATCTCACGCGCCGAGGCCGAGCGGCGCGTGAGGGAGGCCGCCTCGGCTCGGAAGCGCGCTCGCGAGGCCTTGGACCGCTTCGTGCTCCTCTCCTCCGGCTCCTCCTTCCAACCCGGACCCGTCGTCAAGGCGGCGGCGGCGGCGGCGGCTCACGCAACCGAGGTCTCTGGCTCCTCCAATGGCGGGAAAGAACCCTCCAAGAACAAGACCACCACCCCGGTTGCATTGACGAACAAAGCTCATCACCCTAATGGGGGCTTGCATCATAAACAAGAAGAAAAGGCTGAAGAGCAGAAGGTGAAATTGGAGCTGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

30.35

Weight (kDa)

9.25

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 565
AccII CGCG 4 cut(s) 552, 570, 600, 606
AcoI YGGCCR 2 cut(s) 105, 249
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 849
AfiI CCNNNNNNNGG 9 cut(s) 69, 171, 247, 280, 463, 591, 726, 796, 797
AhdI GACNNNNNGTC 1 cut(s) 665
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 6 cut(s) 416, 422, 448, 454, 830, 862
AluBI AGCT 4 cut(s) 255, 448, 782, 853
AluI AGCT 4 cut(s) 255, 448, 782, 853
Alw21I GWGCWC 2 cut(s) 450, 630
Alw26I GTCTC 2 cut(s) 328, 712
AlwNI CAGNNNCTG 2 cut(s) 156, 258
AoxI GGCC 5 cut(s) 105, 249, 558, 579, 609
ApeKI GCWGC 3 cut(s) 122, 150, 539
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 8 cut(s) 62, 416, 480, 503, 554, 570, 600, 602
AspS9I GGNCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
AsuC2I CCSGG 4 cut(s) 93, 248, 657, 761
AsuHPI GGTGA 2 cut(s) 779, 853
AvaII GGWCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
BaeGI GKGCMC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 450, 630
BbvI GCAGC 3 cut(s) 134, 162, 526
BccI CCATC 2 cut(s) 272, 551
BceAI ACGGC 2 cut(s) 42, 473
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 4 cut(s) 93, 248, 657, 761
BcoDI GTCTC 2 cut(s) 328, 712
BfoI RGCGCY 2 cut(s) 63, 481
BglI GCCNNNNNGGC 1 cut(s) 587
Bme1390I CCNGG 5 cut(s) 93, 248, 281, 657, 761
Bme18I GGWCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
BmeRI GACNNNNNGTC 1 cut(s) 665
BmgT120I GGNCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
BmiI GGNNCC 8 cut(s) 30, 90, 96, 163, 179, 643, 661, 715
BmrFI CCNGG 5 cut(s) 93, 248, 281, 657, 761
BmsI GCATC 2 cut(s) 519, 814
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 569, 601
BpuMI CCSGG 4 cut(s) 93, 248, 657, 761
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 6 cut(s) 102, 555, 585, 612, 702, 759
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 9 cut(s) 69, 171, 247, 280, 463, 591, 726, 796, 797
Bse118I RCCGGY 1 cut(s) 125
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 6 cut(s) 102, 555, 585, 612, 702, 759
BseLI CCNNNNNNNGG 9 cut(s) 69, 171, 247, 280, 463, 591, 726, 796, 797
BseMII CTCAG 1 cut(s) 68
BsePI GCGCGC 1 cut(s) 598
BseRI GAGGAG 7 cut(s) 129, 132, 158, 620, 625, 634, 706
BseSI GKGCMC 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 134, 162, 526
BsgI GTGCAG 2 cut(s) 169, 205
Bsh1236I CGCG 4 cut(s) 552, 570, 600, 606
Bsh1285I CGRYCG 2 cut(s) 108, 457
BshFI GGCC 5 cut(s) 107, 251, 560, 581, 611
BshNI GGYRCC 1 cut(s) 88
BsiEI CGRYCG 2 cut(s) 108, 457
BsiHKAI GWGCWC 2 cut(s) 450, 630
BsiSI CCGG 6 cut(s) 92, 126, 248, 639, 657, 761
BslFI GGGAC 2 cut(s) 108, 175
BslI CCNNNNNNNGG 9 cut(s) 69, 171, 247, 280, 463, 591, 726, 796, 797
BsmAI GTCTC 2 cut(s) 328, 712
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 2 cut(s) 108, 175
BsnI GGCC 5 cut(s) 107, 251, 560, 581, 611
Bso31I GGTCTC 1 cut(s) 712
Bsp1286I GDGCHC 3 cut(s) 341, 450, 630
Bsp68I TCGCGA 1 cut(s) 606
BspANI GGCC 5 cut(s) 107, 251, 560, 581, 611
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 4 cut(s) 552, 570, 600, 606
BspLI GGNNCC 8 cut(s) 30, 90, 96, 163, 179, 643, 661, 715
BspQI GCTCTTC 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 712
BsrBI CCGCTC 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 6 cut(s) 102, 555, 585, 612, 702, 759
BssHII GCGCGC 1 cut(s) 598
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 825
BstAPI GCANNNNNTGC 2 cut(s) 156, 228
BstC8I GCNNGC 7 cut(s) 127, 253, 407, 508, 600, 604, 803
BstDEI CTNAG 1 cut(s) 77
BstENI CCTNNNNNAGG 1 cut(s) 278
BstFNI CGCG 4 cut(s) 552, 570, 600, 606
BstH2I RGCGCY 2 cut(s) 63, 481
BstHHI GCGC 8 cut(s) 62, 416, 480, 503, 554, 570, 600, 602
BstMAI GTCTC 2 cut(s) 328, 712
BstMCI CGRYCG 2 cut(s) 108, 457
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 5 cut(s) 91, 246, 279, 655, 759
BstSLI GKGCMC 1 cut(s) 341
BstUI CGCG 4 cut(s) 552, 570, 600, 606
BstV1I GCAGC 3 cut(s) 134, 162, 526
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 5 cut(s) 107, 251, 560, 581, 611
BtgZI GCGATG 1 cut(s) 496
BtuMI TCGCGA 1 cut(s) 606
Cac8I GCNNGC 7 cut(s) 127, 253, 407, 508, 600, 604, 803
CaiI CAGNNNCTG 2 cut(s) 156, 258
CfoI GCGC 8 cut(s) 62, 416, 480, 503, 554, 570, 600, 602
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
CseI GACGC 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 1 cut(s) 526
DdeI CTNAG 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 105, 249
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 825
Eam1105I GACNNNNNGTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 4 cut(s) 147, 200, 227, 409
Ecl136II GAGCTC 1 cut(s) 448
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 712
Eco47I GGWCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 178, 466
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 1 cut(s) 529
FaiI YATR 3 cut(s) 57, 527, 810
FaqI GGGAC 2 cut(s) 108, 175
FatI CATG 1 cut(s) 525
FauI CCCGC 3 cut(s) 152, 414, 719
FriOI GRGCYC 1 cut(s) 450
GlaI GCGC 8 cut(s) 61, 415, 479, 502, 553, 569, 599, 601
HaeII RGCGCY 2 cut(s) 63, 481
HaeIII GGCC 5 cut(s) 107, 251, 560, 581, 611
HapII CCGG 6 cut(s) 92, 126, 248, 639, 657, 761
HgaI GACGC 1 cut(s) 220
HhaI GCGC 8 cut(s) 62, 416, 480, 503, 554, 570, 600, 602
Hin1II CATG 1 cut(s) 529
Hin6I GCGC 8 cut(s) 60, 414, 478, 501, 552, 568, 598, 600
HinP1I GCGC 8 cut(s) 60, 414, 478, 501, 552, 568, 598, 600
HpaII CCGG 6 cut(s) 92, 126, 248, 639, 657, 761
HphI GGTGA 2 cut(s) 779, 853
Hpy188I TCNGA 2 cut(s) 358, 594
Hpy188III TCNNGA 2 cut(s) 17, 605
Hpy99I CGWCG 3 cut(s) 23, 455, 668
HpyAV CCTTC 5 cut(s) 163, 391, 448, 658, 832
HpyCH4V TGCA 4 cut(s) 150, 222, 767, 805
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 529
HspAI GCGC 8 cut(s) 60, 414, 478, 501, 552, 568, 598, 600
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 7 cut(s) 34, 119, 335, 633, 647, 719, 850
Lsp1109I GCAGC 3 cut(s) 134, 162, 526
LweI GCATC 2 cut(s) 519, 814
MaeIII GTNAC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 565
MboII GAAGA 4 cut(s) 16, 433, 830, 842
MhlI GDGCHC 3 cut(s) 341, 450, 630
MluCI AATT 3 cut(s) 292, 431, 845
MmeI TCCRAC 2 cut(s) 381, 676
MroNI GCCGGC 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 6 cut(s) 92, 126, 248, 639, 657, 761
MspR9I CCNGG 5 cut(s) 93, 248, 281, 657, 761
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 4 cut(s) 552, 570, 600, 606
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 4 cut(s) 93, 248, 657, 761
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 529
NlaIV GGNNCC 8 cut(s) 30, 90, 96, 163, 179, 643, 661, 715
NmeAIII GCCGAG 4 cut(s) 83, 566, 580, 586
NruI TCGCGA 1 cut(s) 606
PauI GCGCGC 1 cut(s) 598
PceI AGGCCT 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 279
PpuMI RGGWCCY 2 cut(s) 178, 466
Psp124BI GAGCTC 1 cut(s) 450
Psp5II RGGWCCY 2 cut(s) 178, 466
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 8 cut(s) 30, 90, 96, 163, 179, 643, 661, 715
PspPI GGNCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
PspPPI RGGWCCY 2 cut(s) 178, 466
PstNI CAGNNNCTG 2 cut(s) 156, 258
PteI GCGCGC 1 cut(s) 598
RruI TCGCGA 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 825
Sau96I GGNCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
ScrFI CCNGG 5 cut(s) 93, 248, 281, 657, 761
SduI GDGCHC 3 cut(s) 341, 450, 630
SetI ASST 9 cut(s) 227, 257, 321, 450, 468, 708, 784, 843, 855
SfaNI GCATC 2 cut(s) 519, 814
SinI GGWCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
SmiMI CAYNNNNRTG 1 cut(s) 792
Sse9I AATT 3 cut(s) 292, 431, 845
SseBI AGGCCT 1 cut(s) 611
SstI GAGCTC 1 cut(s) 450
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 5 cut(s) 91, 246, 279, 655, 759
StyI CCWWGG 1 cut(s) 612
TaqI TCGA 3 cut(s) 444, 450, 471
TasI AATT 3 cut(s) 292, 431, 845
TseI GCWGC 3 cut(s) 122, 150, 539
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 182
VpaK11BI GGWCC 7 cut(s) 95, 162, 178, 283, 466, 616, 659
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.