Rh3BG090300

dna binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017503
Physical Location & Seq
Reverse (-)
7016975 .. 7017826
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG090300.1

Sequence Viewer

Length: 852 bp
ATGAAGAACCCTAATACCGACGACGCGGCTCCCAATCCAAAACCGAACAACCACCATAGCGCCGACAATGGGCGGCTGAGAGTAGAGGCACCGGGACCAGCCTCGGCCGGAGGAGCAGCCGGCGGCGGCGGAGTGGTAGAGGAGTGCAGCAACTGCGGGACCAAGAAGGGGTGGGTCCTACACAATGTCCGTTACCGAGCCACCCTCCGCCGCCTCTGCACCTCCTGCGTCCTCCGCCTCCACCCGGCCAGCTTCTGCCCCATCTGCTTCCTGTTCCAGGACCACGGCAATTCCCAAAATGCCCCTCCCCCCAACCTCGTCTCCTGCTCCAAGTGCCCCTCCCTCTCCCACTCCGACTGCCTCCCTCCCTACGCCGCCTTCTCCCCCTCCCCGTTCCTCTGCCCGCCCTGCGCCTCCGCCAACCCCAAATTCTCCTTCTTCGAGCTCGACGACCGCAACAAGGTCCTCGACAAGCGCCTCGCCGCCGTGCTGCTCTGCGCCGCCAGCATCGCCGCCTCGTCCATGTCCAAAGCCGCTGCCATCTCACGCGCCGAGGCCGAGCGGCGCGTGAGGGAGGCCGCCTCGGCTCGGAAGCGCGCTCGCGAGGCCTTGGACCGCTTCGTGCTCCTCTCCTCCGGCTCCTCCTTCCAACCCGGACCCGTCGTCAAGGCGGCGGCGGCTCGCGCAACCGAGGTCTCTGGCTCCTCCAATGGCGGGAAAGAACCCTCCAAGAACAAGACCACCACCCCGGTTGCATTGACGAACAAAGCTCATCACTCTAATGGGGTCTTGCATCATAAACAAGAAGAAAAGGCTGAAGGGCAGAAGGTGAAATTGGAGCTGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

29.98

Weight (kDa)

9.4

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 562
AccII CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
AcoI YGGCCR 2 cut(s) 105, 246
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 837
AfiI CCNNNNNNNGG 7 cut(s) 69, 168, 244, 277, 460, 588, 714
AhdI GACNNNNNGTC 1 cut(s) 662
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 6 cut(s) 413, 419, 445, 451, 818, 850
AluBI AGCT 4 cut(s) 252, 445, 770, 841
AluI AGCT 4 cut(s) 252, 445, 770, 841
Alw21I GWGCWC 2 cut(s) 447, 627
Alw26I GTCTC 2 cut(s) 325, 700
AlwNI CAGNNNCTG 2 cut(s) 153, 255
AoxI GGCC 5 cut(s) 105, 246, 555, 576, 606
ApeKI GCWGC 4 cut(s) 116, 147, 490, 536
ApoI RAATTY 1 cut(s) 428
AspLEI GCGC 9 cut(s) 62, 413, 477, 500, 551, 567, 597, 599, 686
AspS9I GGNCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
AsuC2I CCSGG 4 cut(s) 93, 245, 654, 749
AsuHPI GGTGA 1 cut(s) 841
AvaII GGWCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
BaeGI GKGCMC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 447, 627
BbvI GCAGC 4 cut(s) 128, 159, 477, 523
BccI CCATC 2 cut(s) 269, 548
BceAI ACGGC 2 cut(s) 301, 470
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 4 cut(s) 93, 245, 654, 749
BcoDI GTCTC 2 cut(s) 325, 700
BfoI RGCGCY 2 cut(s) 63, 478
BglI GCCNNNNNGGC 1 cut(s) 584
Bme1390I CCNGG 5 cut(s) 93, 245, 278, 654, 749
Bme18I GGWCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
BmeRI GACNNNNNGTC 1 cut(s) 662
BmgT120I GGNCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
BmiI GGNNCC 8 cut(s) 30, 90, 96, 160, 176, 640, 658, 703
BmrFI CCNGG 5 cut(s) 93, 245, 278, 654, 749
BmsI GCATC 2 cut(s) 516, 802
BplI GAGNNNNNCTC 4 cut(s) 189, 221, 566, 598
BpuMI CCSGG 4 cut(s) 93, 245, 654, 749
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 7 cut(s) 102, 283, 552, 582, 609, 690, 747
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 7 cut(s) 69, 168, 244, 277, 460, 588, 714
Bse118I RCCGGY 1 cut(s) 119
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 7 cut(s) 102, 283, 552, 582, 609, 690, 747
BseLI CCNNNNNNNGG 7 cut(s) 69, 168, 244, 277, 460, 588, 714
BseMII CTCAG 1 cut(s) 68
BsePI GCGCGC 1 cut(s) 595
BseRI GAGGAG 6 cut(s) 126, 155, 617, 622, 631, 694
BseSI GKGCMC 1 cut(s) 338
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 128, 159, 477, 523
BsgI GTGCAG 2 cut(s) 166, 202
Bsh1236I CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
Bsh1285I CGRYCG 2 cut(s) 108, 454
BshFI GGCC 5 cut(s) 107, 248, 557, 578, 608
BshNI GGYRCC 1 cut(s) 88
BsiEI CGRYCG 2 cut(s) 108, 454
BsiHKAI GWGCWC 2 cut(s) 447, 627
BsiSI CCGG 7 cut(s) 92, 108, 120, 245, 636, 654, 749
BslFI GGGAC 2 cut(s) 108, 172
BslI CCNNNNNNNGG 7 cut(s) 69, 168, 244, 277, 460, 588, 714
BsmAI GTCTC 2 cut(s) 325, 700
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 108, 172
BsnI GGCC 5 cut(s) 107, 248, 557, 578, 608
Bso31I GGTCTC 1 cut(s) 700
Bsp1286I GDGCHC 3 cut(s) 338, 447, 627
Bsp68I TCGCGA 1 cut(s) 603
BspANI GGCC 5 cut(s) 107, 248, 557, 578, 608
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
BspLI GGNNCC 8 cut(s) 30, 90, 96, 160, 176, 640, 658, 703
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 700
BsrBI CCGCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 7 cut(s) 102, 283, 552, 582, 609, 690, 747
BssHII GCGCGC 1 cut(s) 595
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 278
BstAPI GCANNNNNTGC 2 cut(s) 153, 225
BstC8I GCNNGC 7 cut(s) 121, 250, 404, 505, 597, 601, 682
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 275
BstFNI CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
BstH2I RGCGCY 2 cut(s) 63, 478
BstHHI GCGC 9 cut(s) 62, 413, 477, 500, 551, 567, 597, 599, 686
BstMAI GTCTC 2 cut(s) 325, 700
BstMCI CGRYCG 2 cut(s) 108, 454
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 5 cut(s) 91, 243, 276, 652, 747
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
BstV1I GCAGC 4 cut(s) 128, 159, 477, 523
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 5 cut(s) 107, 248, 557, 578, 608
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 493
BtuMI TCGCGA 1 cut(s) 603
Cac8I GCNNGC 7 cut(s) 121, 250, 404, 505, 597, 601, 682
CaiI CAGNNNCTG 2 cut(s) 153, 255
CfoI GCGC 9 cut(s) 62, 413, 477, 500, 551, 567, 597, 599, 686
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
CseI GACGC 2 cut(s) 32, 217
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 1 cut(s) 523
DdeI CTNAG 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 2 cut(s) 105, 246
EagI CGGCCG 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 662
EciI GGCGGA 4 cut(s) 144, 197, 224, 406
Ecl136II GAGCTC 1 cut(s) 445
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 609
Eco147I AGGCCT 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 837
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 2 cut(s) 175, 463
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 526
FaiI YATR 3 cut(s) 57, 524, 798
FaqI GGGAC 2 cut(s) 108, 172
FatI CATG 1 cut(s) 522
FauI CCCGC 3 cut(s) 149, 411, 707
FriOI GRGCYC 1 cut(s) 447
GlaI GCGC 9 cut(s) 61, 412, 476, 499, 550, 566, 596, 598, 685
HaeII RGCGCY 2 cut(s) 63, 478
HaeIII GGCC 5 cut(s) 107, 248, 557, 578, 608
HapII CCGG 7 cut(s) 92, 108, 120, 245, 636, 654, 749
HgaI GACGC 2 cut(s) 32, 217
HhaI GCGC 9 cut(s) 62, 413, 477, 500, 551, 567, 597, 599, 686
Hin1II CATG 1 cut(s) 526
Hin6I GCGC 9 cut(s) 60, 411, 475, 498, 549, 565, 595, 597, 684
HinP1I GCGC 9 cut(s) 60, 411, 475, 498, 549, 565, 595, 597, 684
HpaII CCGG 7 cut(s) 92, 108, 120, 245, 636, 654, 749
HphI GGTGA 1 cut(s) 841
Hpy188I TCNGA 2 cut(s) 355, 591
Hpy188III TCNNGA 1 cut(s) 602
Hpy99I CGWCG 4 cut(s) 23, 26, 452, 665
HpyAV CCTTC 6 cut(s) 160, 388, 445, 655, 812, 820
HpyCH4V TGCA 4 cut(s) 147, 219, 755, 793
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 526
HspAI GCGC 9 cut(s) 60, 411, 475, 498, 549, 565, 595, 597, 684
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
LmnI GCTCC 7 cut(s) 34, 113, 332, 630, 644, 707, 838
Lsp1109I GCAGC 4 cut(s) 128, 159, 477, 523
LweI GCATC 2 cut(s) 516, 802
MaeIII GTNAC 1 cut(s) 191
MbiI CCGCTC 1 cut(s) 562
MboII GAAGA 3 cut(s) 16, 430, 818
MhlI GDGCHC 3 cut(s) 338, 447, 627
MluCI AATT 3 cut(s) 289, 428, 833
MmeI TCCRAC 2 cut(s) 378, 673
MroNI GCCGGC 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 7 cut(s) 92, 108, 120, 245, 636, 654, 749
MspR9I CCNGG 5 cut(s) 93, 245, 278, 654, 749
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 6 cut(s) 26, 549, 567, 597, 603, 684
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 4 cut(s) 93, 245, 654, 749
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 8 cut(s) 30, 90, 96, 160, 176, 640, 658, 703
NmeAIII GCCGAG 4 cut(s) 83, 563, 577, 583
NruI TCGCGA 1 cut(s) 603
PauI GCGCGC 1 cut(s) 595
PceI AGGCCT 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 276
PpuMI RGGWCCY 2 cut(s) 175, 463
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 2 cut(s) 175, 463
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 8 cut(s) 30, 90, 96, 160, 176, 640, 658, 703
PspPI GGNCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
PspPPI RGGWCCY 2 cut(s) 175, 463
PstNI CAGNNNCTG 2 cut(s) 153, 255
PteI GCGCGC 1 cut(s) 595
RruI TCGCGA 1 cut(s) 603
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 447
Sau96I GGNCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
ScrFI CCNGG 5 cut(s) 93, 245, 278, 654, 749
SduI GDGCHC 3 cut(s) 338, 447, 627
SetI ASST 9 cut(s) 224, 254, 318, 447, 465, 696, 772, 831, 843
SfaNI GCATC 2 cut(s) 516, 802
SinI GGWCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
SmiMI CAYNNNNRTG 1 cut(s) 780
Sse9I AATT 3 cut(s) 289, 428, 833
SseBI AGGCCT 1 cut(s) 608
SstI GAGCTC 1 cut(s) 447
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 5 cut(s) 91, 243, 276, 652, 747
StyI CCWWGG 1 cut(s) 609
TaqI TCGA 3 cut(s) 441, 447, 468
TasI AATT 3 cut(s) 289, 428, 833
TseI GCWGC 4 cut(s) 116, 147, 490, 536
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 179
VpaK11BI GGWCC 7 cut(s) 95, 159, 175, 280, 463, 613, 656
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.