FvH4_6g08440

dna binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017503
Physical Location & Seq
Reverse (-)
4997706 .. 4998353
648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08440.t1

Sequence Viewer

Length: 648 bp
ATGGAGAACCCTAATTCCACCCCCAACGGAGCAGTCCCGGCCGGAAGAGTACAAGACGAGGAGTGCAGCAACTGCGGCACCAAGAAAGCGTGGGTCCTACACAACGTCCGCTACCGCGCCAACCTCCGCCGCCTCTGCACCTCCTGCGTCCTCCGCCTCCACCCCTCCAGCTTCTGCCCCTTGTGCTTCCTCTCCCACCCTGACCTAAATTCCCAAAACGCCCTCGTCTCCTGCTCCAAGTGCCCCTCCCTCTCCCACCCTGACTGCCTCCCTCCCTACGCCGCCTTCTCCCCCTCCCCCTTCCTCTGCCCGCCCTGCTCCTCCGCCAACCCCAACACCTTCTCCTTCTTCCAATTAGACGACCGCCACCGCTCCCTCGACAAGCGCCTCGCCGCCGTGCTCCTCTGCGCCGCCACCATCGCCGCCTCCTCCATGTCCAAGGCCGTCGCCGTCGCACGCGCCGAGGCCGAGCGGCGCGTGAGGGAGGCCGCCAACGCCAGGAAGCGCGCTCGTGAGGCCTTGGACCGCTTCGTCATACTCTCCTCCTCCGCCAAGGCCGTCCGCGCCGACGTCTCGGGGTCCTCCAACGGCGGAAAACAAGCCTCCAAGAACAATGAGAAACCGAATGGGTTGAAAGGGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.19

Weight (kDa)

9.45

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 530
AatII GACGTC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 2 cut(s) 372, 472
AccII CGCG 5 cut(s) 117, 459, 477, 507, 564
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 498
AgsI TTSAA 1 cut(s) 634
AjnI CCWGG 1 cut(s) 497
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 232, 577
AlwNI CAGNNNCTG 2 cut(s) 72, 174
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 6 cut(s) 39, 441, 465, 486, 516, 555
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 8 cut(s) 119, 387, 410, 461, 477, 507, 509, 566
AspS9I GGNCC 3 cut(s) 94, 523, 579
AsuC2I CCSGG 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 3 cut(s) 94, 523, 579
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 425
BceAI ACGGC 5 cut(s) 380, 428, 434, 542, 604
BciT130I CCWGG 1 cut(s) 499
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 232, 577
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 9 cut(s) 67, 76, 130, 282, 393, 411, 423, 473, 489
BlsI GCNGC 9 cut(s) 68, 77, 131, 283, 394, 412, 424, 474, 490
Bme1390I CCNGG 2 cut(s) 38, 499
Bme18I GGWCC 3 cut(s) 94, 523, 579
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 3 cut(s) 94, 523, 579
BmiI GGNNCC 3 cut(s) 79, 95, 580
BmrFI CCNGG 2 cut(s) 38, 499
BpmI CTGGAG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 4 cut(s) 438, 462, 519, 552
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 4 cut(s) 438, 462, 519, 552
BseLI CCNNNNNNNGG 1 cut(s) 498
BsePI GCGCGC 1 cut(s) 505
BseRI GAGGAG 6 cut(s) 74, 310, 392, 418, 532, 535
BseSI GKGCMC 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 78
BsgI GTGCAG 2 cut(s) 85, 121
Bsh1236I CGCG 5 cut(s) 117, 459, 477, 507, 564
Bsh1285I CGRYCG 2 cut(s) 42, 364
BshFI GGCC 6 cut(s) 41, 443, 467, 488, 518, 557
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 2 cut(s) 42, 364
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 2 cut(s) 38, 42
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 2 cut(s) 232, 577
BsmBI CGTCTC 2 cut(s) 232, 577
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 6 cut(s) 41, 443, 467, 488, 518, 557
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 245, 402
BspANI GGCC 6 cut(s) 41, 443, 467, 488, 518, 557
BspFNI CGCG 5 cut(s) 117, 459, 477, 507, 564
BspLI GGNNCC 3 cut(s) 79, 95, 580
BspT107I GGYRCC 1 cut(s) 77
BsrBI CCGCTC 2 cut(s) 372, 472
BssECI CCNNGG 4 cut(s) 438, 462, 519, 552
BssHII GCGCGC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 570
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 3 cut(s) 438, 519, 552
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 499
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 570
BstAPI GCANNNNNTGC 2 cut(s) 72, 144
BstC8I GCNNGC 3 cut(s) 311, 457, 507
BstFNI CGCG 5 cut(s) 117, 459, 477, 507, 564
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 8 cut(s) 119, 387, 410, 461, 477, 507, 509, 566
BstMAI GTCTC 2 cut(s) 232, 577
BstMCI CGRYCG 2 cut(s) 42, 364
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 36, 497
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 5 cut(s) 117, 459, 477, 507, 564
BstV1I GCAGC 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 6 cut(s) 41, 443, 467, 488, 518, 557
BtgZI GCGATG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 311, 457, 507
CaiI CAGNNNCTG 2 cut(s) 72, 174
CfoI GCGC 8 cut(s) 119, 387, 410, 461, 477, 507, 509, 566
Cfr13I GGNCC 3 cut(s) 94, 523, 579
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 433
CviJI RGCY 8 cut(s) 41, 171, 443, 467, 488, 518, 557, 602
CviKI_1 RGCY 8 cut(s) 41, 171, 443, 467, 488, 518, 557, 602
CviQI GTAC 1 cut(s) 50
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
EciI GGCGGA 5 cut(s) 116, 143, 313, 538, 606
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 3 cut(s) 438, 519, 552
Eco147I AGGCCT 1 cut(s) 518
Eco47I GGWCC 3 cut(s) 94, 523, 579
Eco52I CGGCCG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 574
EcoO109I RGGNCCY 2 cut(s) 94, 579
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 3 cut(s) 438, 519, 552
ErhI CCWWGG 3 cut(s) 438, 519, 552
Esp3I CGTCTC 2 cut(s) 232, 577
FaeI CATG 1 cut(s) 436
FaiI YATR 2 cut(s) 434, 536
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 432
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 9 cut(s) 67, 76, 130, 282, 393, 411, 423, 473, 489
Fsp4HI GCNGC 9 cut(s) 67, 76, 130, 282, 393, 411, 423, 473, 489
GlaI GCGC 8 cut(s) 118, 386, 409, 460, 476, 506, 508, 565
GluI GCNGC 9 cut(s) 67, 76, 130, 282, 393, 411, 423, 473, 489
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 6 cut(s) 41, 443, 467, 488, 518, 557
HapII CCGG 2 cut(s) 38, 42
HgaI GACGC 1 cut(s) 136
HhaI GCGC 8 cut(s) 119, 387, 410, 461, 477, 507, 509, 566
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 8 cut(s) 117, 385, 408, 459, 475, 505, 507, 564
HinP1I GCGC 8 cut(s) 117, 385, 408, 459, 475, 505, 507, 564
HpaII CCGG 2 cut(s) 38, 42
Hpy188III TCNNGA 1 cut(s) 512
Hpy99I CGWCG 3 cut(s) 449, 455, 572
HpyAV CCTTC 4 cut(s) 295, 310, 349, 355
HpyCH4IV ACGT 2 cut(s) 105, 570
HpyCH4V TGCA 2 cut(s) 66, 138
HpySE526I ACGT 2 cut(s) 105, 570
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 8 cut(s) 117, 385, 408, 459, 475, 505, 507, 564
LmnI GCTCC 5 cut(s) 29, 239, 323, 377, 405
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 2 cut(s) 105, 570
MbiI CCGCTC 2 cut(s) 372, 472
MboII GAAGA 2 cut(s) 57, 340
MhlI GDGCHC 2 cut(s) 245, 402
MluCI AATT 3 cut(s) 13, 208, 353
MmeI TCCRAC 1 cut(s) 609
MspI CCGG 2 cut(s) 38, 42
MspR9I CCNGG 2 cut(s) 38, 499
MvaI CCWGG 1 cut(s) 499
MvnI CGCG 5 cut(s) 117, 459, 477, 507, 564
NciI CCSGG 1 cut(s) 38
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 3 cut(s) 79, 95, 580
NmeAIII GCCGAG 2 cut(s) 487, 493
PauI GCGCGC 1 cut(s) 505
PceI AGGCCT 1 cut(s) 518
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PkrI GCNGC 9 cut(s) 68, 77, 131, 283, 394, 412, 424, 474, 490
PpuMI RGGWCCY 2 cut(s) 94, 579
Psp5II RGGWCCY 2 cut(s) 94, 579
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 79, 95, 580
PspPI GGNCC 3 cut(s) 94, 523, 579
PspPPI RGGWCCY 2 cut(s) 94, 579
PstNI CAGNNNCTG 2 cut(s) 72, 174
PteI GCGCGC 1 cut(s) 505
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SatI GCNGC 9 cut(s) 67, 76, 130, 282, 393, 411, 423, 473, 489
Sau96I GGNCC 3 cut(s) 94, 523, 579
ScrFI CCNGG 2 cut(s) 38, 499
SduI GDGCHC 2 cut(s) 245, 402
SetI ASST 7 cut(s) 108, 126, 143, 173, 207, 341, 573
SinI GGWCC 3 cut(s) 94, 523, 579
Sse9I AATT 3 cut(s) 13, 208, 353
SseBI AGGCCT 1 cut(s) 518
StuI AGGCCT 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 36, 497
StyI CCWWGG 3 cut(s) 438, 519, 552
TaiI ACGT 2 cut(s) 108, 573
TaqI TCGA 1 cut(s) 378
TasI AATT 3 cut(s) 13, 208, 353
TatI WGTACW 1 cut(s) 49
TauI GCSGC 8 cut(s) 78, 132, 284, 395, 413, 425, 475, 491
TseI GCWGC 1 cut(s) 66
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 94, 523, 579
XapI RAATTY 1 cut(s) 208
ZraI GACGTC 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.