Rorug03G0027700

dna binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017503
Physical Location & Seq
Forward (+)
2138302 .. 2139743
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0027700.1

Sequence Viewer

Length: 960 bp
ATGAACAGTAATAGGGATATGCATGAGGATGACCACTACTCGATCAAAGCTACAAATCTTCATGACCCCGCTGCAGAAGTAGCATTCACTCCAAAGCTTAGTGCTACTTCCAACATGACCCAAAGTCATGTGTTATCATTCAACCACCACCATCATCAGGTGGTTGGAATGACATCGTCTGAGCAAGGCAGAAGTGCCAGTGATGGTCAACAACCCGCCTCTGCAGATTCACAGCGAAGTTCCCGATGGAATCCAACCCCGGAGCAGTTACGGTTCCTGGAAGAGCTGTACGAACATGGTTTAAAGACACCGACGGCACAACAAATTCGACAAGTGACTGCGCGGCTTCGACACTTTGGAAAGCTTGAAGGCAAGAATGTCTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGAAGACAACTCATGTCCATGCCTCAGTATCAGTCAAAGGAACAACAACTTTGGAGTAACAAAGAATCTGCAGGAGCTGCAGGACTGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAACAAATGGACACTGTCAAACTGCGGTGTTTTTGTTGATCAGGAATTATCTCCAGGGCTGCGAAAGAGGATGAGCATGGTAACGGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTCGGCTACACTGACCTCGGAAGCACAACGAAGTGAACGAACAAACGCATCAGCTACATTAATATACCCAAAGCTCTTCGACTATCATCATCCCCATTATGATTATGATTACGGTATGGTGTTGAGTGCACCCAATATTTACAAAGGAGCAGAAAGTAGATTAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGGCAATGTTAAGGGTGTTAATGATACTAAATCACCAATGATTAGAACCACAAACACAGACAGTAATGAAGATTTCATGGCAGACCAATATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

36.6

Weight (kDa)

6.96

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 79 - 140 7.3e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 864
AccII CGCG 1 cut(s) 343
AciI CCGC 5 cut(s) 69, 216, 343, 570, 864
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 2 cut(s) 290, 526
AfiI CCNNNNNNNGG 2 cut(s) 157, 409
AgsI TTSAA 3 cut(s) 142, 368, 533
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 2 cut(s) 276, 598
AluBI AGCT 8 cut(s) 50, 97, 286, 364, 503, 719, 739, 847
AluI AGCT 8 cut(s) 50, 97, 286, 364, 503, 719, 739, 847
Alw21I GWGCWC 3 cut(s) 543, 796, 849
Alw26I GTCTC 2 cut(s) 409, 418
Alw44I GTGCAC 1 cut(s) 792
AlwNI CAGNNNCTG 1 cut(s) 503
ApaLI GTGCAC 1 cut(s) 792
ApeKI GCWGC 3 cut(s) 71, 503, 604
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 725
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 888
BaeGI GKGCMC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 849
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 2 cut(s) 373, 436
Bbv12I GWGCWC 3 cut(s) 543, 796, 849
BbvI GCAGC 3 cut(s) 58, 490, 591
BccI CCATC 3 cut(s) 159, 197, 240
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 2 cut(s) 278, 600
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 409, 418
BfmI CTRYAG 4 cut(s) 72, 222, 495, 504
BisI GCNGC 5 cut(s) 72, 344, 504, 605, 865
BlsI GCNGC 5 cut(s) 73, 345, 505, 606, 866
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 3 cut(s) 260, 278, 600
BmeRI GACNNNNNGTC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 260, 278, 600
BmsI GCATC 1 cut(s) 722
BpiI GAAGAC 2 cut(s) 373, 436
BpmI CTGGAG 2 cut(s) 582, 863
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 258, 599, 681
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 409
Bse1I ACTGG 2 cut(s) 198, 392
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 2 cut(s) 278, 600
BseDI CCNNGG 3 cut(s) 258, 599, 681
BseGI GGATG 3 cut(s) 34, 621, 754
BseLI CCNNNNNNNGG 2 cut(s) 157, 409
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 3 cut(s) 171, 464, 503
BseNI ACTGG 2 cut(s) 198, 392
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 3 cut(s) 58, 490, 591
Bsh1236I CGCG 1 cut(s) 343
BsiHKAI GWGCWC 3 cut(s) 543, 796, 849
BsiSI CCGG 2 cut(s) 260, 642
BslI CCNNNNNNNGG 2 cut(s) 157, 409
BsmAI GTCTC 2 cut(s) 409, 418
BsmBI CGTCTC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 543, 796, 849
Bsp143I GATC 2 cut(s) 42, 583
BspACI CCGC 5 cut(s) 69, 216, 343, 570, 864
BspCNI CTCAG 3 cut(s) 172, 463, 504
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 275
BspMAI CTGCAG 4 cut(s) 76, 226, 499, 508
BspQI GCTCTTC 2 cut(s) 276, 746
BsrBI CCGCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 874
BsrI ACTGG 2 cut(s) 198, 392
BssECI CCNNGG 3 cut(s) 258, 599, 681
BssMI GATC 2 cut(s) 42, 583
Bst2UI CCWGG 2 cut(s) 278, 600
Bst4CI ACNGT 5 cut(s) 8, 273, 561, 779, 926
Bst6I CTCTTC 3 cut(s) 276, 416, 746
BstAPI GCANNNNNTGC 1 cut(s) 503
BstDEI CTNAG 4 cut(s) 98, 180, 450, 512
BstF5I GGATG 3 cut(s) 34, 621, 754
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 45, 586
BstMAI GTCTC 2 cut(s) 409, 418
BstMBI GATC 2 cut(s) 42, 583
BstMWI GCNNNNNNNGC 2 cut(s) 80, 503
BstNI CCWGG 2 cut(s) 278, 600
BstSCI CCNGG 3 cut(s) 258, 276, 598
BstSFI CTRYAG 4 cut(s) 72, 222, 495, 504
BstSLI GKGCMC 1 cut(s) 796
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 58, 490, 591
BstV2I GAAGAC 2 cut(s) 373, 436
BtsCI GGATG 3 cut(s) 34, 621, 754
BtsIMutI CAGTG 3 cut(s) 205, 557, 674
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 289, 525
CviAII CATG 9 cut(s) 23, 62, 115, 128, 296, 439, 445, 622, 940
CviQI GTAC 2 cut(s) 289, 525
DdeI CTNAG 4 cut(s) 98, 180, 450, 512
DpnI GATC 2 cut(s) 44, 585
DpnII GATC 2 cut(s) 42, 583
DraI TTTAAA 1 cut(s) 303
DriI GACNNNNNGTC 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 276, 416, 746
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 3 cut(s) 276, 416, 746
Ecl136II GAGCTC 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 847
EcoICRI GAGCTC 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 276, 598
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 849
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 9 cut(s) 26, 65, 118, 131, 299, 442, 448, 625, 943
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 9 cut(s) 22, 61, 114, 127, 295, 438, 444, 621, 939
FauI CCCGC 2 cut(s) 76, 223
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 72, 344, 504, 605, 865
FokI GGATG 3 cut(s) 41, 628, 741
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 5 cut(s) 72, 344, 504, 605, 865
GlaI GCGC 1 cut(s) 342
GluI GCNGC 5 cut(s) 72, 344, 504, 605, 865
GsuI CTGGAG 2 cut(s) 582, 863
HapII CCGG 2 cut(s) 260, 642
HhaI GCGC 1 cut(s) 343
Hin1II CATG 9 cut(s) 26, 65, 118, 131, 299, 442, 448, 625, 943
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 95, 362
HinfI GANTC 3 cut(s) 227, 250, 491
HpaII CCGG 2 cut(s) 260, 642
HphI GGTGA 1 cut(s) 888
Hpy166II GTNNAC 3 cut(s) 209, 701, 794
Hpy188I TCNGA 3 cut(s) 181, 396, 685
Hpy188III TCNNGA 5 cut(s) 62, 243, 530, 587, 842
Hpy8I GTNNAC 3 cut(s) 209, 701, 794
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 362, 510
HpyCH4III ACNGT 5 cut(s) 8, 273, 561, 779, 926
HpyCH4V TGCA 6 cut(s) 22, 74, 224, 497, 506, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 503
HpyF3I CTNAG 4 cut(s) 98, 180, 450, 512
Hsp92II CATG 9 cut(s) 26, 65, 118, 131, 299, 442, 448, 625, 943
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 2 cut(s) 42, 583
LguI GCTCTTC 2 cut(s) 276, 746
LmnI GCTCC 5 cut(s) 262, 500, 655, 812, 844
Lsp1109I GCAGC 3 cut(s) 58, 490, 591
LweI GCATC 1 cut(s) 722
MaeIII GTNAC 4 cut(s) 267, 334, 482, 625
MalI GATC 2 cut(s) 44, 585
MbiI CCGCTC 1 cut(s) 864
MboI GATC 2 cut(s) 42, 583
MboII GAAGA 7 cut(s) 50, 293, 373, 433, 441, 733, 944
MfeI CAATTG 1 cut(s) 647
MhlI GDGCHC 3 cut(s) 543, 796, 849
MluCI AATT 5 cut(s) 324, 534, 590, 634, 647
MmeI TCCRAC 3 cut(s) 135, 145, 278
MnlI CCTC 7 cut(s) 19, 229, 402, 459, 606, 646, 691
Mph1103I ATGCAT 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 5 cut(s) 302, 725, 873, 882, 958
MslI CAYNNNNRTG 2 cut(s) 27, 443
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 260, 642
MspR9I CCNGG 3 cut(s) 260, 278, 600
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 2 cut(s) 278, 600
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 80, 503
NciI CCSGG 1 cut(s) 260
NdeII GATC 2 cut(s) 42, 583
NlaIII CATG 9 cut(s) 26, 65, 118, 131, 299, 442, 448, 625, 943
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 24
PagI TCATGA 1 cut(s) 61
PciSI GCTCTTC 2 cut(s) 276, 746
PcsI WCGNNNNNNNCGW 1 cut(s) 700
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 227, 250, 491
PflFI GACNNNGTC 2 cut(s) 175, 559
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 5 cut(s) 73, 345, 505, 606, 866
PshBI ATTAAT 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 2 cut(s) 276, 598
PspGI CCWGG 2 cut(s) 276, 598
PspN4I GGNNCC 1 cut(s) 275
PstI CTGCAG 4 cut(s) 76, 226, 499, 508
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 2 cut(s) 175, 559
RsaI GTAC 2 cut(s) 290, 526
RsaNI GTAC 2 cut(s) 289, 525
RseI CAYNNNNRTG 2 cut(s) 27, 443
SacI GAGCTC 1 cut(s) 849
SapI GCTCTTC 2 cut(s) 276, 746
SaqAI TTAA 5 cut(s) 302, 725, 873, 882, 958
SatI GCNGC 5 cut(s) 72, 344, 504, 605, 865
Sau3AI GATC 2 cut(s) 42, 583
ScaI AGTACT 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 260, 278, 600
SduI GDGCHC 3 cut(s) 543, 796, 849
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 4 cut(s) 72, 222, 495, 504
SmiMI CAYNNNNRTG 2 cut(s) 27, 443
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 5 cut(s) 324, 534, 590, 634, 647
SsiI CCGC 5 cut(s) 69, 216, 343, 570, 864
SspI AATATT 2 cut(s) 802, 953
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 3 cut(s) 258, 276, 598
TaaI ACNGT 5 cut(s) 8, 273, 561, 779, 926
TaqI TCGA 4 cut(s) 41, 328, 349, 744
TasI AATT 5 cut(s) 324, 534, 590, 634, 647
TatI WGTACW 1 cut(s) 524
TauI GCSGC 2 cut(s) 346, 867
TfiI GAWTC 3 cut(s) 227, 250, 491
Tru1I TTAA 5 cut(s) 302, 725, 873, 882, 958
Tru9I TTAA 5 cut(s) 302, 725, 873, 882, 958
TscAI CASTG 3 cut(s) 205, 564, 681
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 71, 503, 604
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 17, 50, 928, 945
TspRI CASTG 3 cut(s) 205, 564, 681
Tth111I GACNNNGTC 2 cut(s) 175, 559
VneI GTGCAC 1 cut(s) 792
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 526
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.